Wall clock time and date at job start Tue Mar 31 2020 04:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46873 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.46911 * 179.97438 * 11 10 9 13 13 O 1.42091 * 110.54497 * 291.62816 * 12 11 10 14 14 O 1.42099 * 110.53989 * 68.37910 * 12 11 10 15 15 N 1.65600 * 104.44695 * 179.97438 * 12 11 10 16 16 C 1.47159 * 121.05372 * 90.00209 * 15 12 11 17 17 C 1.53281 * 108.47541 * 129.21940 * 16 15 12 18 18 O 1.42996 * 109.29435 * 52.11841 * 17 16 15 19 19 C 1.42776 * 114.13062 * 297.82385 * 18 17 16 20 20 H 1.09005 * 109.34691 * 302.90220 * 19 18 17 21 21 C 1.52789 * 109.99171 * 183.24651 * 19 18 17 22 22 O 1.41872 * 109.89047 * 296.34310 * 21 19 18 23 23 C 1.42948 * 113.66442 * 298.72233 * 22 21 19 24 24 C 1.53035 * 109.27368 * 61.88534 * 23 22 21 25 25 C 1.47294 * 121.05886 * 269.71803 * 15 12 11 26 26 H 1.08997 * 110.09861 * 351.25299 * 25 15 12 27 27 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 29 29 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 30 30 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 31 31 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 32 32 H 1.08994 * 109.47272 * 300.00031 * 11 10 9 33 33 H 1.09003 * 109.46507 * 60.00134 * 11 10 9 34 34 H 1.08998 * 109.63777 * 248.91008 * 16 15 12 35 35 H 1.08992 * 109.63948 * 9.32309 * 16 15 12 36 36 H 1.08999 * 109.50098 * 172.06261 * 17 16 15 37 37 H 1.08994 * 109.50317 * 292.13586 * 17 16 15 38 38 H 1.08998 * 109.42550 * 56.28848 * 21 19 18 39 39 H 1.09000 * 109.42596 * 176.12416 * 21 19 18 40 40 H 1.08994 * 109.50735 * 301.94819 * 23 22 21 41 41 H 1.08996 * 109.53619 * 181.84498 * 23 22 21 42 42 H 1.08997 * 109.48802 * 182.02390 * 24 23 22 43 43 H 1.09009 * 109.48710 * 61.96527 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 16 6.1563 -4.3467 0.0016 13 8 5.8602 -4.9799 1.2387 14 8 5.8602 -4.9807 -1.2352 15 7 7.8060 -4.2017 0.0007 16 6 8.5627 -4.1346 1.2610 17 6 9.6954 -5.1658 1.2030 18 8 10.4449 -4.9770 -0.0001 19 6 9.6892 -5.1732 -1.1955 20 1 9.2587 -6.1746 -1.1903 21 6 10.5961 -5.0282 -2.4165 22 8 11.1031 -3.7051 -2.4868 23 6 10.0880 -2.7083 -2.6264 24 6 9.1733 -2.7438 -1.4000 25 6 8.5629 -4.1420 -1.2614 26 1 7.9057 -4.3606 -2.1030 27 1 -0.4850 0.8400 -0.0004 28 1 3.8753 -0.6803 -0.8889 29 1 3.8746 -0.6799 0.8911 30 1 3.6579 -3.1505 0.8908 31 1 3.6587 -3.1502 -0.8892 32 1 5.9150 -2.1226 -0.8890 33 1 5.9149 -2.1227 0.8910 34 1 8.9824 -3.1362 1.3836 35 1 7.9015 -4.3593 2.0978 36 1 10.3507 -5.0353 2.0641 37 1 9.2736 -6.1707 1.2156 38 1 11.4280 -5.7278 -2.3353 39 1 10.0262 -5.2472 -3.3195 40 1 9.5020 -2.9087 -3.5233 41 1 10.5513 -1.7250 -2.7065 42 1 8.3766 -2.0095 -1.5192 43 1 9.7531 -2.5100 -0.5070 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907746302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:20 Heat of formation + Delta-G solvation = -189.088083 kcal Electronic energy + Delta-G solvation = -26328.557882 eV Core-core repulsion = 22499.904972 eV Total energy + Delta-G solvation = -3828.652911 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.45190 -38.66441 -38.32714 -37.17062 -36.55112 -36.24185 -34.27944 -33.29875 -31.78966 -30.20594 -29.04853 -25.93488 -25.39559 -24.48707 -23.93506 -22.23274 -20.82864 -19.90583 -19.03830 -18.94684 -17.97488 -17.65858 -17.32746 -17.22611 -16.79655 -16.39284 -16.24566 -16.02321 -15.81882 -15.37918 -14.92797 -14.71071 -14.66049 -14.32424 -14.10875 -13.71010 -13.53093 -13.38204 -13.30261 -13.27740 -13.17674 -12.77441 -12.72776 -12.60814 -12.37430 -12.18569 -11.94150 -11.87392 -11.68096 -11.49187 -11.43272 -11.16816 -11.11750 -10.79390 -10.53676 -9.82813 -8.31746 -6.38107 -0.90205 1.35604 1.38290 1.48008 1.49769 2.34742 2.59313 2.70083 2.98442 3.03422 3.11320 3.39648 3.56194 3.69744 3.77531 3.85111 3.91447 3.98723 4.11571 4.25293 4.28053 4.34491 4.39026 4.44975 4.50874 4.55860 4.63916 4.73659 4.78917 4.84436 4.86233 4.90502 4.94073 5.09400 5.28619 5.30568 5.37936 5.42808 5.60165 6.08044 6.22758 6.31219 6.70198 7.26740 8.85263 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.019853 B = 0.003468 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.046163 B = 8071.388232 C = 8729.653153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.239 1.239 6 H -0.286 1.286 7 C -0.546 4.546 8 H 0.029 0.971 9 C -0.004 4.004 10 C -0.103 4.103 11 C -0.606 4.606 12 S 2.613 3.387 13 O -0.985 6.985 14 O -0.985 6.985 15 N -0.996 5.996 16 C 0.075 3.925 17 C 0.048 3.952 18 O -0.372 6.372 19 C 0.047 3.953 20 H 0.069 0.931 21 C 0.070 3.930 22 O -0.386 6.386 23 C 0.056 3.944 24 C -0.163 4.163 25 C 0.111 3.889 26 H 0.113 0.887 27 H 0.267 0.733 28 H 0.032 0.968 29 H 0.032 0.968 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.131 0.869 37 H 0.051 0.949 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.378 -6.685 -2.269 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.162 1.162 6 H -0.211 1.211 7 C -0.584 4.584 8 H 0.047 0.953 9 C -0.042 4.042 10 C -0.143 4.143 11 C -0.738 4.738 12 S 2.712 3.288 13 O -0.975 6.975 14 O -0.975 6.975 15 N -0.834 5.834 16 C -0.050 4.050 17 C -0.030 4.030 18 O -0.291 6.291 19 C -0.013 4.013 20 H 0.087 0.913 21 C -0.007 4.007 22 O -0.304 6.304 23 C -0.021 4.021 24 C -0.202 4.202 25 C 0.005 3.995 26 H 0.131 0.869 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.172 0.828 33 H 0.172 0.828 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.148 0.852 37 H 0.069 0.931 38 H 0.130 0.870 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.130 0.870 42 H 0.110 0.890 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 27.133 -7.348 -2.231 28.199 hybrid contribution -1.220 0.959 0.193 1.563 sum 25.914 -6.389 -2.038 26.767 Atomic orbital electron populations 1.70084 1.08548 1.28366 1.52247 1.26120 0.95695 1.03915 0.93827 0.85589 0.79667 0.77543 0.79436 1.18842 1.16168 1.21140 1.21552 0.92361 0.93280 1.51164 0.95256 1.19492 0.93677 0.93310 0.97748 1.21186 0.90402 1.00586 1.02082 1.30550 1.05404 1.23915 1.13882 1.04743 0.72972 0.78055 0.72992 1.93525 1.83516 1.74145 1.46306 1.93519 1.83573 1.74132 1.46324 1.57868 1.23098 1.90008 1.12415 1.22384 0.95307 1.02232 0.85082 1.23071 0.94041 0.97513 0.88399 1.87966 1.36320 1.91435 1.13343 1.22983 0.92563 0.97864 0.87900 0.91347 1.22529 0.98759 0.85292 0.94157 1.87825 1.33359 1.15389 1.93865 1.22770 0.89950 0.93087 0.96252 1.22543 1.00715 0.95836 1.01109 1.21851 0.94007 0.97455 0.86181 0.86923 0.92390 0.95001 0.94959 0.91991 0.91919 0.82765 0.82784 0.88469 0.87661 0.85154 0.93071 0.86986 0.89518 0.91496 0.87010 0.89040 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 2 C 0.00 0.07 5.47 84.65 0.46 0.53 16 3 Si 0.96 42.63 27.47 68.60 1.88 44.51 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 6 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.55 -31.36 9.66 25.60 0.25 -31.11 16 8 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 9 C 0.00 -0.16 4.04 29.85 0.12 -0.04 16 10 C -0.10 -3.87 5.16 30.60 0.16 -3.71 16 11 C -0.61 -15.40 6.18 71.98 0.44 -14.95 16 12 S 2.61 69.75 5.48 -56.49 -0.31 69.44 16 13 O -0.98 -31.98 16.63 -127.65 -2.12 -34.10 16 14 O -0.99 -31.82 16.63 -127.65 -2.12 -33.95 16 15 N -1.00 -19.54 2.95 -489.53 -1.44 -20.99 16 16 C 0.07 1.18 6.19 86.35 0.53 1.72 16 17 C 0.05 0.72 6.99 72.08 0.50 1.23 16 18 O -0.37 -6.87 9.96 -143.92 -1.43 -8.31 16 19 C 0.05 0.80 2.90 30.47 0.09 0.89 16 20 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 21 C 0.07 0.99 6.45 71.91 0.46 1.46 16 22 O -0.39 -6.62 10.71 -143.88 -1.54 -8.17 16 23 C 0.06 0.73 6.82 71.99 0.49 1.23 16 24 C -0.16 -2.31 5.38 30.67 0.17 -2.15 16 25 C 0.11 1.96 2.76 44.85 0.12 2.08 16 26 H 0.11 2.04 6.92 -2.39 -0.02 2.02 16 27 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 28 H 0.03 1.31 7.57 -2.39 -0.02 1.30 16 29 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.15 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.15 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.10 1.18 7.37 -2.39 -0.02 1.16 16 35 H 0.11 1.70 6.89 -2.39 -0.02 1.69 16 36 H 0.13 1.31 8.14 -2.39 -0.02 1.30 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.25 6.82 -2.38 -0.02 1.24 16 Total: -1.00 -78.31 349.33 -2.05 -80.36 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.94 Total: 13.48 kcal Atomic # 6 Polarization: -46.63 SS G_CDS: 3.80 Total: -42.83 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -1.14 Total: -80.44 kcal Atomic # 8 Polarization: -77.30 SS G_CDS: -7.22 Total: -84.52 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.88 Total: 44.51 kcal Atomic # 16 Polarization: 69.75 SS G_CDS: -0.31 Total: 69.44 kcal Total: -78.31 -2.05 -80.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907746302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.732 kcal (2) G-P(sol) polarization free energy of solvation -78.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds