Wall clock time and date at job start Tue Mar 31 2020 05:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00037 * 2 1 4 4 H 1.48496 * 109.47148 * 239.99857 * 3 2 1 5 5 H 1.48504 * 109.46825 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46854 * 119.99817 * 3 2 1 7 7 C 1.38815 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99761 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00458 * 0.02562 * 7 2 1 10 10 C 1.47578 * 134.49225 * 179.97438 * 9 7 2 11 11 C 1.53949 * 86.11899 * 155.36028 * 10 9 7 12 12 N 1.46494 * 113.74350 * 137.95121 * 11 10 9 13 13 C 1.34779 * 120.00003 * 156.93091 * 12 11 10 14 14 O 1.21582 * 119.99986 * 359.97438 * 13 12 11 15 15 C 1.47526 * 120.00154 * 180.02562 * 13 12 11 16 16 C 1.39860 * 120.70968 * 359.97438 * 15 13 12 17 17 C 1.38617 * 118.63723 * 180.02562 * 16 15 13 18 18 C 1.38096 * 119.53344 * 359.85976 * 17 16 15 19 19 N 1.32438 * 120.63703 * 0.24565 * 18 17 16 20 20 C 1.31998 * 122.27892 * 359.82849 * 19 18 17 21 21 O 1.35426 * 119.83051 * 179.97438 * 20 19 18 22 22 C 1.50928 * 121.02529 * 180.30981 * 18 17 16 23 23 C 1.52932 * 109.78267 * 342.93306 * 22 18 17 24 24 O 1.43208 * 108.52955 * 49.46560 * 23 22 18 25 25 C 1.42745 * 113.05171 * 289.20049 * 24 23 22 26 26 C 1.47815 * 134.45560 * 359.87132 * 9 7 2 27 27 H 0.96999 * 120.00166 * 0.02562 * 1 2 3 28 28 H 1.08995 * 113.76999 * 41.06070 * 10 9 7 29 29 H 1.09004 * 113.77115 * 269.66197 * 10 9 7 30 30 H 1.08998 * 113.74234 * 269.16181 * 11 10 9 31 31 H 0.97005 * 120.00178 * 336.92706 * 12 11 10 32 32 H 1.08000 * 120.68028 * 0.03109 * 16 15 13 33 33 H 0.96704 * 114.00164 * 269.99554 * 21 20 19 34 34 H 1.08998 * 109.41719 * 222.84332 * 22 18 17 35 35 H 1.08994 * 109.42071 * 103.02572 * 22 18 17 36 36 H 1.09001 * 109.62637 * 289.75100 * 23 22 18 37 37 H 1.08997 * 109.78421 * 169.27379 * 23 22 18 38 38 H 1.08998 * 109.34163 * 171.82257 * 25 24 23 39 39 H 1.09001 * 109.34146 * 291.34892 * 25 24 23 40 40 H 1.08991 * 113.77089 * 90.37588 * 26 9 7 41 41 H 1.08998 * 113.83283 * 318.90987 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7202 -3.8101 0.0005 11 6 0.3470 -4.0830 0.6409 12 7 -0.3333 -5.2614 0.0980 13 6 -1.2733 -5.8931 0.8287 14 8 -1.5563 -5.4853 1.9385 15 6 -1.9580 -7.0801 0.2822 16 6 -1.6437 -7.5623 -0.9925 17 6 -2.3140 -8.6804 -1.4637 18 6 -3.2659 -9.2885 -0.6693 19 7 -3.5463 -8.8106 0.5336 20 6 -2.9391 -7.7487 1.0294 21 8 -3.2652 -7.3020 2.2656 22 6 -4.0109 -10.5115 -1.1459 23 6 -3.8664 -10.6473 -2.6623 24 8 -2.4801 -10.5255 -3.0001 25 6 -1.9797 -9.1985 -2.8374 26 6 -0.1058 -2.7571 0.0024 27 1 -0.4850 0.8400 -0.0004 28 1 2.5624 -4.0324 0.6557 29 1 1.8320 -4.2351 -0.9970 30 1 0.3594 -4.0639 1.7306 31 1 -0.1073 -5.5870 -0.7874 32 1 -0.8941 -7.0735 -1.5972 33 1 -3.9816 -6.6525 2.2729 34 1 -5.0660 -10.4159 -0.8895 35 1 -3.6001 -11.3975 -0.6620 36 1 -4.4344 -9.8589 -3.1562 37 1 -4.2371 -11.6211 -2.9825 38 1 -0.8976 -9.2022 -2.9683 39 1 -2.4296 -8.5485 -3.5878 40 1 -0.5311 -2.8722 -0.9944 41 1 -0.7188 -2.1400 0.6592 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031237784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:41 Heat of formation + Delta-G solvation = -20.023830 kcal Electronic energy + Delta-G solvation = -26221.875698 eV Core-core repulsion = 22297.402763 eV Total energy + Delta-G solvation = -3924.472935 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.38275 -39.63360 -38.71056 -37.41724 -36.90094 -34.19687 -33.33803 -32.05845 -31.89385 -30.68362 -27.51192 -25.91715 -25.40758 -24.89282 -23.51169 -23.07235 -21.85170 -20.28753 -19.75419 -18.73490 -17.71473 -17.50452 -16.83074 -16.58723 -16.39432 -15.75481 -15.39301 -15.20613 -15.00449 -14.70047 -14.33698 -14.10183 -13.94330 -13.85043 -13.50488 -13.12015 -12.74692 -12.49671 -12.08039 -11.94988 -11.79264 -11.52861 -11.50658 -11.38630 -10.92347 -10.82127 -10.56620 -10.49173 -10.12109 -10.07215 -9.93860 -9.60421 -9.45616 -8.99608 -8.85367 -8.51366 -6.97683 -5.81879 -3.16166 0.31230 0.72251 2.73977 3.13416 3.27967 3.37626 3.41134 3.42776 3.44784 3.57092 4.03631 4.09424 4.23523 4.40703 4.51290 4.62168 4.69688 4.89157 4.92844 5.00248 5.11634 5.15402 5.21817 5.25027 5.42613 5.45771 5.47503 5.50789 5.71486 5.94347 6.04190 6.14586 6.33149 6.49141 6.56854 6.65012 7.17203 7.27280 7.34492 7.49550 7.57050 7.74823 7.91464 8.40281 8.97996 9.64452 10.50059 11.34774 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.023321 B = 0.002651 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.333673 B =10559.136387 C =11270.681118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.606 5.606 10 C 0.113 3.887 11 C 0.092 3.908 12 N -0.710 5.710 13 C 0.558 3.442 14 O -0.518 6.518 15 C -0.197 4.197 16 C -0.020 4.020 17 C -0.194 4.194 18 C 0.183 3.817 19 N -0.510 5.510 20 C 0.377 3.623 21 O -0.458 6.458 22 C -0.106 4.106 23 C 0.058 3.942 24 O -0.372 6.372 25 C 0.109 3.891 26 C 0.155 3.845 27 H 0.256 0.744 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.113 0.887 31 H 0.393 0.607 32 H 0.147 0.853 33 H 0.407 0.593 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.028 0.972 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.565 -21.862 -6.948 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.355 4.355 8 H 0.099 0.901 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.012 4.012 12 N -0.361 5.361 13 C 0.343 3.657 14 O -0.395 6.395 15 C -0.204 4.204 16 C -0.047 4.047 17 C -0.196 4.196 18 C 0.046 3.954 19 N -0.229 5.229 20 C 0.195 3.805 21 O -0.266 6.266 22 C -0.144 4.144 23 C -0.019 4.019 24 O -0.290 6.290 25 C 0.031 3.969 26 C 0.028 3.972 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.131 0.869 31 H 0.228 0.772 32 H 0.165 0.835 33 H 0.267 0.733 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.798 -22.045 -5.431 24.349 hybrid contribution 0.678 1.797 -0.948 2.142 sum -8.119 -20.248 -6.379 22.729 Atomic orbital electron populations 1.69815 1.05066 1.25672 1.55970 1.24826 0.95710 0.97684 1.02047 0.86157 0.78462 0.82888 0.77978 1.21119 1.21494 1.20938 1.18936 0.90238 0.81573 1.44713 0.90052 1.45697 1.02368 0.99144 1.86070 1.22870 0.94622 0.86895 0.97036 1.23989 0.93347 0.83799 1.00094 1.46067 1.39573 1.30906 1.19552 1.17754 0.80224 0.82314 0.85369 1.90824 1.63669 1.65939 1.19029 1.21272 1.03329 0.99882 0.95934 1.21575 0.96294 0.93287 0.93494 1.21029 0.99899 0.98646 1.00018 1.20813 0.92025 0.94648 0.87926 1.67098 1.28714 1.13498 1.13570 1.19058 0.89292 0.87893 0.84221 1.84718 1.58312 1.62369 1.21171 1.21170 1.01440 0.94753 0.97023 1.22704 0.82972 1.03309 0.92890 1.88117 1.25174 1.28105 1.87575 1.21380 1.00722 0.83965 0.90809 1.22718 0.88216 0.89055 0.97178 0.93443 0.93100 0.94754 0.86920 0.77241 0.83537 0.73272 0.88183 0.88330 0.92136 0.87447 0.87097 0.90988 0.95398 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.22 11.39 55.49 0.63 -26.59 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.92 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.31 10.70 -15.06 -0.16 -6.48 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 N -0.61 -15.32 3.70 -177.85 -0.66 -15.98 16 10 C 0.11 2.19 8.69 -2.97 -0.03 2.17 16 11 C 0.09 1.76 4.40 -70.12 -0.31 1.45 16 12 N -0.71 -10.68 5.33 -56.37 -0.30 -10.98 16 13 C 0.56 8.96 7.77 -12.47 -0.10 8.86 16 14 O -0.52 -10.21 14.83 -16.40 -0.24 -10.45 16 15 C -0.20 -2.60 5.90 -104.74 -0.62 -3.22 16 16 C -0.02 -0.20 9.27 -38.83 -0.36 -0.56 16 17 C -0.19 -1.79 5.80 -104.60 -0.61 -2.40 16 18 C 0.18 1.90 6.68 -82.27 -0.55 1.35 16 19 N -0.51 -6.51 10.23 -9.14 -0.09 -6.61 16 20 C 0.38 5.21 7.77 -16.71 -0.13 5.08 16 21 O -0.46 -6.47 11.68 -39.66 -0.46 -6.93 16 22 C -0.11 -0.75 6.23 -27.81 -0.17 -0.93 16 23 C 0.06 0.33 6.84 37.12 0.25 0.59 16 24 O -0.37 -2.96 10.81 -35.23 -0.38 -3.34 16 25 C 0.11 0.75 6.65 35.94 0.24 0.99 16 26 C 0.15 3.62 7.33 -2.82 -0.02 3.60 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.04 0.60 8.11 -51.93 -0.42 0.18 16 30 H 0.11 2.36 7.51 -51.93 -0.39 1.97 16 31 H 0.39 4.60 6.82 -40.82 -0.28 4.32 16 32 H 0.15 1.02 6.51 -52.49 -0.34 0.68 16 33 H 0.41 4.12 9.06 45.56 0.41 4.53 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.29 8.07 -51.93 -0.42 -0.12 16 37 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 2.08 7.16 -51.93 -0.37 1.71 16 LS Contribution 344.76 15.07 5.20 5.20 Total: -1.00 -36.01 344.76 -8.30 -44.31 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.31 Total: 4.15 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: -2.65 Total: 10.25 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.42 Total: -60.15 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -1.09 Total: -20.72 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.01 -8.30 -44.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031237784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.290 kcal (2) G-P(sol) polarization free energy of solvation -36.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds