Wall clock time and date at job start Tue Mar 31 2020 05:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99677 * 2 1 4 4 H 1.48508 * 109.47130 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47581 * 300.00275 * 3 2 1 6 6 H 1.48498 * 109.47273 * 60.00770 * 3 2 1 7 7 C 1.37874 * 120.00498 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00502 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99717 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47370 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47037 * 180.02562 * 10 9 7 12 12 N 1.46507 * 109.46659 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99847 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99648 * 0.02562 * 13 12 11 15 15 N 1.34769 * 120.00187 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00241 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.46998 * 180.02562 * 16 15 13 18 18 N 1.46500 * 109.46998 * 180.02562 * 17 16 15 19 19 C 1.47069 * 126.30253 * 274.69225 * 18 17 16 20 20 C 1.54312 * 109.97218 * 150.90232 * 19 18 17 21 21 C 1.55611 * 104.18855 * 45.50518 * 20 19 18 22 22 S 1.66999 * 126.30237 * 94.99687 * 18 17 16 23 23 O 1.42100 * 105.13628 * 298.89448 * 22 18 17 24 24 O 1.42096 * 105.13093 * 68.56859 * 22 18 17 25 25 H 0.97003 * 120.00258 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47412 * 60.00244 * 9 7 2 27 27 H 1.09005 * 109.47354 * 300.00634 * 9 7 2 28 28 H 1.08996 * 109.47240 * 59.99420 * 10 9 7 29 29 H 1.09000 * 109.46340 * 300.00166 * 10 9 7 30 30 H 1.08992 * 109.47441 * 59.99505 * 11 10 9 31 31 H 1.08996 * 109.46882 * 299.99054 * 11 10 9 32 32 H 0.96996 * 120.00112 * 359.97438 * 12 11 10 33 33 H 0.97010 * 119.99849 * 0.02562 * 15 13 12 34 34 H 1.09000 * 109.47175 * 60.00333 * 16 15 13 35 35 H 1.09001 * 109.47297 * 299.99840 * 16 15 13 36 36 H 1.08993 * 109.46955 * 300.00226 * 17 16 15 37 37 H 1.09000 * 109.47050 * 60.00054 * 17 16 15 38 38 H 1.09001 * 109.35331 * 271.18457 * 19 18 17 39 39 H 1.08997 * 109.35581 * 30.82396 * 19 18 17 40 40 H 1.09005 * 110.64826 * 286.77454 * 20 19 18 41 41 H 1.09001 * 110.38801 * 164.11021 * 20 19 18 42 42 H 1.09004 * 111.16547 * 204.06066 * 21 20 19 43 43 H 1.08994 * 111.16562 * 79.79827 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0018 13 6 1.9832 -7.3713 -0.0019 14 8 0.7878 -7.5934 -0.0020 15 7 2.8590 -8.3956 -0.0030 16 6 2.3707 -9.7768 -0.0037 17 6 3.5608 -10.7385 -0.0042 18 7 3.0726 -12.1197 -0.0055 19 6 2.6907 -12.9093 1.1750 20 6 1.6087 -13.9407 0.7917 21 6 2.1310 -14.5667 -0.5338 22 16 2.8539 -13.0898 -1.3472 23 8 1.8877 -12.4139 -2.1402 24 8 4.1636 -13.3568 -1.8293 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5570 0.8896 28 1 2.8721 -3.6043 0.8894 29 1 2.8720 -3.6042 -0.8905 30 1 0.8539 -5.0445 -0.8913 31 1 0.8535 -5.0451 0.8886 32 1 3.3860 -5.9233 -0.0021 33 1 3.8128 -8.2183 -0.0033 34 1 1.7648 -9.9476 -0.8935 35 1 1.7656 -9.9488 0.8865 36 1 4.1663 -10.5667 -0.8941 37 1 4.1664 -10.5676 0.8858 38 1 3.5677 -13.4284 1.5615 39 1 2.2985 -12.2434 1.9436 40 1 0.6495 -13.4492 0.6291 41 1 1.5207 -14.7039 1.5649 42 1 1.3124 -14.9796 -1.1234 43 1 2.8929 -15.3214 -0.3392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351640310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:15 Heat of formation + Delta-G solvation = -103.155728 kcal Electronic energy + Delta-G solvation = -23990.670272 eV Core-core repulsion = 20198.036418 eV Total energy + Delta-G solvation = -3792.633853 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.81000 -38.07929 -37.46009 -36.38393 -35.79525 -34.99242 -33.43256 -33.08752 -31.14145 -28.98784 -26.87693 -26.23250 -23.64373 -22.79005 -22.42970 -20.86740 -20.40672 -19.37650 -18.20860 -17.78222 -17.20819 -16.62673 -16.33134 -15.97111 -15.73652 -15.25218 -15.04501 -14.68280 -14.63236 -14.42377 -14.02658 -13.95883 -13.83961 -13.56008 -12.89798 -12.72585 -12.50728 -12.38307 -12.27113 -12.06561 -12.01066 -11.77803 -11.67844 -11.38001 -11.03850 -10.90352 -10.70072 -10.55044 -10.10868 -9.83608 -9.63775 -9.41654 -9.19780 -9.09016 -8.57638 -8.35771 -6.00130 -4.03073 -0.31392 1.89602 2.84245 3.11573 3.31128 3.31831 3.38584 3.40600 3.42116 3.71156 3.90401 4.23799 4.28995 4.41289 4.48047 4.50237 4.72693 4.76960 4.91067 5.00194 5.02140 5.17360 5.21031 5.35679 5.65048 5.66667 5.75895 5.84994 5.97179 6.21743 6.43113 6.56090 6.65612 6.82729 7.05119 7.08401 7.66396 7.79210 7.99116 8.17081 8.40052 8.78066 9.03944 9.61015 11.11185 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.041098 B = 0.001727 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.142361 B =16207.126575 C =16329.694428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.741 5.741 13 C 0.701 3.299 14 O -0.591 6.591 15 N -0.752 5.752 16 C 0.113 3.887 17 C 0.150 3.850 18 N -0.988 5.988 19 C 0.077 3.923 20 C -0.127 4.127 21 C -0.598 4.598 22 S 2.568 3.432 23 O -0.948 6.948 24 O -0.956 6.956 25 H 0.260 0.740 26 H 0.020 0.980 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.394 0.606 33 H 0.395 0.605 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.142 0.858 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.488 -33.588 3.339 34.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.396 5.396 13 C 0.401 3.599 14 O -0.468 6.468 15 N -0.409 5.409 16 C -0.013 4.013 17 C 0.025 3.975 18 N -0.830 5.830 19 C -0.049 4.049 20 C -0.166 4.166 21 C -0.729 4.729 22 S 2.664 3.336 23 O -0.937 6.937 24 O -0.945 6.945 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.227 0.773 33 H 0.228 0.772 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.130 0.870 42 H 0.160 0.840 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.460 -33.355 2.362 34.260 hybrid contribution 1.053 0.757 0.639 1.445 sum 8.513 -32.598 3.001 33.825 Atomic orbital electron populations 1.69975 1.06051 1.26554 1.50669 1.25037 0.94864 0.99320 0.95337 0.86524 0.80025 0.83772 0.77571 1.19783 1.21022 1.21032 1.21245 0.93025 0.90941 1.50745 0.92593 1.19039 0.93882 0.90829 0.97716 1.21889 0.99779 0.93329 1.00823 1.21514 0.91297 0.84115 1.01907 1.45376 1.10462 1.04398 1.79333 1.15965 0.85239 0.80732 0.78014 1.90930 1.14125 1.84082 1.57688 1.44925 1.08998 1.05131 1.81881 1.21668 0.96699 0.79292 1.03672 1.21103 0.94883 0.77572 1.03959 1.57115 1.82127 1.21595 1.22123 1.22164 0.98049 0.93966 0.90745 1.22718 0.99552 0.98401 0.95942 1.30856 1.13575 1.18079 1.10400 1.06569 0.75643 0.77537 0.73834 1.93663 1.62710 1.70570 1.66780 1.93625 1.37639 1.84995 1.78275 0.92993 0.96207 0.96244 0.92775 0.92751 0.91931 0.91964 0.77301 0.77179 0.90479 0.91232 0.89630 0.89377 0.90386 0.88533 0.88390 0.87020 0.83985 0.84047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C 0.13 2.45 5.67 -4.04 -0.02 2.42 16 12 N -0.74 -10.88 5.56 -65.23 -0.36 -11.24 16 13 C 0.70 10.95 8.57 -86.93 -0.74 10.21 16 14 O -0.59 -11.99 16.34 5.29 0.09 -11.91 16 15 N -0.75 -8.05 5.56 -65.22 -0.36 -8.41 16 16 C 0.11 1.13 6.00 -4.04 -0.02 1.10 16 17 C 0.15 0.98 6.47 -4.04 -0.03 0.96 16 18 N -0.99 -6.03 3.31 -113.19 -0.38 -6.41 16 19 C 0.08 0.23 6.83 -3.04 -0.02 0.21 16 20 C -0.13 -0.25 6.81 -24.65 -0.17 -0.41 16 21 C -0.60 -1.58 7.51 38.55 0.29 -1.29 16 22 S 2.57 18.88 6.17 -107.50 -0.66 18.22 16 23 O -0.95 -10.97 18.14 -57.41 -1.04 -12.01 16 24 O -0.96 -10.18 18.13 -57.41 -1.04 -11.22 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.39 4.49 8.49 -40.82 -0.35 4.15 16 33 H 0.39 2.81 8.49 -40.82 -0.35 2.46 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 39 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.11 -0.01 8.14 -51.93 -0.42 -0.44 16 42 H 0.14 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.14 0.13 8.14 -51.93 -0.42 -0.29 16 LS Contribution 373.32 15.07 5.63 5.63 Total: -1.00 -40.33 373.32 -10.82 -51.15 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -7.00 Total: -1.80 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -1.41 Total: -2.32 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.36 Total: -52.31 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -2.00 Total: -35.14 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 18.88 SS G_CDS: -0.66 Total: 18.22 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -40.33 -10.82 -51.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351640310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.004 kcal (2) G-P(sol) polarization free energy of solvation -40.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds