Wall clock time and date at job start Tue Mar 31 2020 05:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99515 * 2 1 4 4 H 1.48500 * 109.47126 * 239.99775 * 3 2 1 5 5 H 1.48494 * 109.47253 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46787 * 119.99946 * 3 2 1 7 7 C 1.37875 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00171 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99881 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.63891 * 298.31125 * 9 7 2 11 11 C 1.55157 * 110.71903 * 61.45034 * 9 7 2 12 12 C 1.54918 * 101.58155 * 153.86325 * 11 9 7 13 13 N 1.47425 * 104.82827 * 322.99497 * 12 11 9 14 14 C 1.34782 * 125.64189 * 204.10422 * 13 12 11 15 15 O 1.21279 * 119.99514 * 180.02562 * 14 13 12 16 16 C 1.50695 * 120.00344 * 0.02562 * 14 13 12 17 17 F 1.39901 * 109.47240 * 325.00121 * 16 14 13 18 18 F 1.39901 * 109.46946 * 84.99931 * 16 14 13 19 19 C 1.52998 * 109.47146 * 205.00028 * 16 14 13 20 20 O 1.42901 * 110.01686 * 58.61260 * 19 16 14 21 21 C 1.54259 * 110.03301 * 297.16692 * 19 16 14 22 22 C 1.54897 * 104.19537 * 217.10791 * 21 19 16 23 23 C 1.54889 * 102.75002 * 37.94080 * 22 21 19 24 24 C 1.53883 * 110.03047 * 179.97438 * 19 16 14 25 25 C 1.47015 * 108.70882 * 24.12597 * 13 12 11 26 26 H 0.96994 * 120.00520 * 0.02562 * 1 2 3 27 27 H 0.96700 * 114.00627 * 61.69274 * 10 9 7 28 28 H 1.09001 * 111.00846 * 271.94033 * 11 9 7 29 29 H 1.09000 * 111.00346 * 35.79565 * 11 9 7 30 30 H 1.08999 * 110.35942 * 81.82689 * 12 11 9 31 31 H 1.08996 * 110.36556 * 204.15522 * 12 11 9 32 32 H 0.96704 * 113.99679 * 300.70043 * 20 19 16 33 33 H 1.08998 * 110.48536 * 335.78145 * 21 19 16 34 34 H 1.08995 * 110.49055 * 98.42895 * 21 19 16 35 35 H 1.09000 * 110.75281 * 279.62819 * 22 21 19 36 36 H 1.08995 * 110.75758 * 156.25851 * 22 21 19 37 37 H 1.08993 * 110.48567 * 203.38284 * 23 22 21 38 38 H 1.08999 * 110.48257 * 80.73478 * 23 22 21 39 39 H 1.09009 * 110.02833 * 238.56969 * 24 19 16 40 40 H 1.09000 * 110.03140 * 359.97438 * 24 19 16 41 41 H 1.09000 * 109.88350 * 239.52260 * 25 13 12 42 42 H 1.08998 * 109.88602 * 118.35926 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.4497 -2.6180 1.1775 11 6 0.3766 -2.6281 -1.2745 12 6 0.2722 -4.1663 -1.4259 13 7 1.5934 -4.6763 -1.0160 14 6 2.1337 -5.8515 -1.3948 15 8 3.2329 -6.1707 -0.9938 16 6 1.3721 -6.7688 -2.3165 17 9 0.0045 -6.6828 -2.0345 18 9 1.5994 -6.3897 -3.6438 19 6 1.8461 -8.2086 -2.1090 20 8 1.6489 -8.5971 -0.7480 21 6 3.3370 -8.3335 -2.4846 22 6 3.4454 -9.7276 -3.1508 23 6 2.1260 -9.8251 -3.9563 24 6 1.0756 -9.1571 -3.0442 25 6 2.2236 -3.6909 -0.1253 26 1 -0.4850 0.8399 -0.0004 27 1 -0.2285 -1.9340 1.2624 28 1 -0.6065 -2.1830 -1.1207 29 1 0.8745 -2.1837 -2.1364 30 1 -0.5059 -4.5598 -0.7718 31 1 0.0679 -4.4324 -2.4629 32 1 2.1181 -8.0433 -0.1090 33 1 3.6198 -7.5511 -3.1889 34 1 3.9605 -8.2879 -1.5917 35 1 3.4966 -10.5131 -2.3968 36 1 4.3080 -9.7721 -3.8156 37 1 1.8658 -10.8679 -4.1373 38 1 2.2133 -9.2836 -4.8982 39 1 0.5525 -9.9141 -2.4598 40 1 0.3638 -8.5916 -3.6456 41 1 3.1681 -3.3551 -0.5532 42 1 2.3954 -4.1343 0.8555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844019467.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:56 Heat of formation + Delta-G solvation = -230.781355 kcal Electronic energy + Delta-G solvation = -29302.599083 eV Core-core repulsion = 24918.297830 eV Total energy + Delta-G solvation = -4384.301253 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.26918 -47.20600 -40.01174 -38.90773 -37.39539 -35.08843 -34.53624 -32.30239 -30.35293 -29.55311 -29.03766 -28.52209 -26.29047 -24.70277 -22.47377 -21.32798 -20.52502 -20.05492 -19.50852 -18.08397 -17.73776 -17.55230 -17.18310 -16.16425 -15.75858 -15.62295 -15.23145 -14.97436 -14.49301 -14.39082 -14.06903 -13.88791 -13.60777 -13.41200 -13.34482 -13.13861 -12.88895 -12.75534 -12.42159 -12.16962 -11.94902 -11.78119 -11.49222 -11.43418 -11.38077 -11.35864 -10.94777 -10.91395 -10.75712 -10.73273 -10.57597 -10.33012 -10.22192 -9.64942 -9.45522 -8.75000 -8.40234 -8.31758 -6.36436 -4.44948 2.25397 2.69833 3.17549 3.22715 3.25983 3.49742 3.77404 3.84130 4.16454 4.20965 4.37404 4.58061 4.75929 4.90317 4.91462 5.19495 5.27603 5.38042 5.41393 5.46764 5.54533 5.67125 5.70145 5.78523 5.86098 5.86763 5.88910 6.05372 6.10719 6.16068 6.24617 6.40603 6.69881 6.78763 7.17437 7.23759 7.34223 7.61336 7.65356 7.85700 7.97172 8.56972 9.20476 9.29980 10.71168 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.029778 B = 0.003567 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.059204 B = 7847.272552 C = 7997.740732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.135 4.135 12 C 0.088 3.912 13 N -0.581 5.581 14 C 0.487 3.513 15 O -0.523 6.523 16 C 0.260 3.740 17 F -0.179 7.179 18 F -0.177 7.177 19 C 0.113 3.887 20 O -0.537 6.537 21 C -0.135 4.135 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.113 4.113 25 C 0.119 3.881 26 H 0.270 0.730 27 H 0.384 0.616 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.386 0.614 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.012 -14.635 -6.853 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.083 0.917 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.174 4.174 12 C -0.034 4.034 13 N -0.311 5.311 14 C 0.270 3.730 15 O -0.401 6.401 16 C 0.219 3.781 17 F -0.160 7.160 18 F -0.158 7.158 19 C 0.070 3.930 20 O -0.344 6.344 21 C -0.173 4.173 22 C -0.160 4.160 23 C -0.160 4.160 24 C -0.150 4.150 25 C -0.001 4.001 26 H 0.080 0.920 27 H 0.235 0.765 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.236 0.764 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.433 -15.668 -6.842 17.157 hybrid contribution 0.072 2.129 -0.053 2.131 sum 1.505 -13.539 -6.896 15.268 Atomic orbital electron populations 1.69674 1.05970 1.27940 1.49757 1.24983 0.95049 0.99580 0.93284 0.86446 0.79545 0.81917 0.78930 1.20020 1.21044 1.19932 1.21435 0.93657 0.90050 1.52533 0.91711 1.19438 0.86919 0.90454 0.82371 1.86117 1.51825 1.56640 1.44783 1.23367 1.03238 0.89734 1.01032 1.22811 0.83518 0.97856 0.99182 1.48759 1.19746 1.16839 1.45717 1.20263 0.86991 0.82342 0.83437 1.90727 1.19161 1.73722 1.56517 1.22257 0.78738 0.97761 0.79300 1.93063 1.32536 1.97145 1.93213 1.93047 1.94346 1.92635 1.35734 1.22606 0.97108 0.88123 0.85134 1.86553 1.75062 1.58560 1.14248 1.23003 0.93500 0.98092 1.02706 1.22507 0.97488 0.96887 0.99086 1.22378 0.94550 1.00735 0.98299 1.22180 0.98112 0.98538 0.96166 1.22281 0.97059 0.88264 0.92539 0.92015 0.76520 0.88896 0.91231 0.90741 0.91708 0.76401 0.90169 0.88914 0.90964 0.91000 0.90911 0.91033 0.89215 0.90285 0.90215 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.35 10.67 55.43 0.59 -21.75 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 3 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.54 -13.65 8.21 -34.44 -0.28 -13.93 16 8 H 0.06 1.64 7.57 -52.48 -0.40 1.24 16 9 C 0.25 5.79 0.85 -89.94 -0.08 5.72 16 10 O -0.58 -14.15 13.08 -35.23 -0.46 -14.61 16 11 C -0.13 -2.87 5.47 -24.58 -0.13 -3.01 16 12 C 0.09 1.65 5.45 -2.52 -0.01 1.64 16 13 N -0.58 -11.28 3.33 -170.52 -0.57 -11.85 16 14 C 0.49 8.77 6.60 -10.99 -0.07 8.70 16 15 O -0.52 -9.73 13.55 3.96 0.05 -9.68 16 16 C 0.26 4.07 0.81 -27.89 -0.02 4.05 16 17 F -0.18 -2.88 14.07 2.25 0.03 -2.85 16 18 F -0.18 -2.75 15.80 2.25 0.04 -2.71 16 19 C 0.11 1.54 0.65 -89.50 -0.06 1.48 16 20 O -0.54 -7.62 12.84 -36.83 -0.47 -8.09 16 21 C -0.14 -1.69 4.43 -25.07 -0.11 -1.80 16 22 C -0.12 -1.19 6.91 -24.73 -0.17 -1.36 16 23 C -0.12 -1.13 6.83 -25.04 -0.17 -1.30 16 24 C -0.11 -1.28 5.90 -25.58 -0.15 -1.43 16 25 C 0.12 2.56 6.22 -3.07 -0.02 2.54 16 26 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 27 H 0.38 9.31 7.46 45.56 0.34 9.65 16 28 H 0.09 2.04 7.54 -51.93 -0.39 1.65 16 29 H 0.07 1.52 8.04 -51.93 -0.42 1.11 16 30 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 31 H 0.06 1.11 7.18 -51.93 -0.37 0.74 16 32 H 0.39 5.27 7.38 45.56 0.34 5.60 16 33 H 0.08 1.07 7.25 -51.93 -0.38 0.69 16 34 H 0.09 1.22 7.26 -51.93 -0.38 0.85 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.99 7.95 -51.92 -0.41 0.58 16 40 H 0.08 0.90 7.32 -51.93 -0.38 0.52 16 41 H 0.08 1.72 7.66 -51.93 -0.40 1.32 16 42 H 0.07 1.50 8.07 -51.93 -0.42 1.08 16 LS Contribution 337.44 15.07 5.09 5.09 Total: -1.00 -26.15 337.44 -6.61 -32.76 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -4.51 Total: 15.91 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.38 Total: 3.04 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.02 Total: -33.60 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.88 Total: -32.39 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.07 Total: -5.56 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.15 -6.61 -32.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844019467.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.018 kcal (2) G-P(sol) polarization free energy of solvation -26.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds