Wall clock time and date at job start Tue Mar 31 2020 05:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99515 * 2 1 4 4 H 1.48500 * 109.47126 * 239.99775 * 3 2 1 5 5 H 1.48494 * 109.47253 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46787 * 119.99946 * 3 2 1 7 7 C 1.37875 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00171 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99881 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.63891 * 298.31125 * 9 7 2 11 11 C 1.55157 * 110.71903 * 61.45034 * 9 7 2 12 12 C 1.54918 * 101.58155 * 153.86325 * 11 9 7 13 13 N 1.47425 * 104.82827 * 322.99497 * 12 11 9 14 14 C 1.34782 * 125.64189 * 204.10422 * 13 12 11 15 15 O 1.21279 * 119.99514 * 180.02562 * 14 13 12 16 16 C 1.50695 * 120.00344 * 0.02562 * 14 13 12 17 17 F 1.39901 * 109.47240 * 325.00121 * 16 14 13 18 18 F 1.39901 * 109.46946 * 84.99931 * 16 14 13 19 19 C 1.52998 * 109.47146 * 205.00028 * 16 14 13 20 20 O 1.42901 * 110.01686 * 58.61260 * 19 16 14 21 21 C 1.54259 * 110.03301 * 297.16692 * 19 16 14 22 22 C 1.54897 * 104.19537 * 217.10791 * 21 19 16 23 23 C 1.54889 * 102.75002 * 37.94080 * 22 21 19 24 24 C 1.53883 * 110.03047 * 179.97438 * 19 16 14 25 25 C 1.47015 * 108.70882 * 24.12597 * 13 12 11 26 26 H 0.96994 * 120.00520 * 0.02562 * 1 2 3 27 27 H 0.96700 * 114.00627 * 61.69274 * 10 9 7 28 28 H 1.09001 * 111.00846 * 271.94033 * 11 9 7 29 29 H 1.09000 * 111.00346 * 35.79565 * 11 9 7 30 30 H 1.08999 * 110.35942 * 81.82689 * 12 11 9 31 31 H 1.08996 * 110.36556 * 204.15522 * 12 11 9 32 32 H 0.96704 * 113.99679 * 300.70043 * 20 19 16 33 33 H 1.08998 * 110.48536 * 335.78145 * 21 19 16 34 34 H 1.08995 * 110.49055 * 98.42895 * 21 19 16 35 35 H 1.09000 * 110.75281 * 279.62819 * 22 21 19 36 36 H 1.08995 * 110.75758 * 156.25851 * 22 21 19 37 37 H 1.08993 * 110.48567 * 203.38284 * 23 22 21 38 38 H 1.08999 * 110.48257 * 80.73478 * 23 22 21 39 39 H 1.09009 * 110.02833 * 238.56969 * 24 19 16 40 40 H 1.09000 * 110.03140 * 359.97438 * 24 19 16 41 41 H 1.09000 * 109.88350 * 239.52260 * 25 13 12 42 42 H 1.08998 * 109.88602 * 118.35926 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.4497 -2.6180 1.1775 11 6 0.3766 -2.6281 -1.2745 12 6 0.2722 -4.1663 -1.4259 13 7 1.5934 -4.6763 -1.0160 14 6 2.1337 -5.8515 -1.3948 15 8 3.2329 -6.1707 -0.9938 16 6 1.3721 -6.7688 -2.3165 17 9 0.0045 -6.6828 -2.0345 18 9 1.5994 -6.3897 -3.6438 19 6 1.8461 -8.2086 -2.1090 20 8 1.6489 -8.5971 -0.7480 21 6 3.3370 -8.3335 -2.4846 22 6 3.4454 -9.7276 -3.1508 23 6 2.1260 -9.8251 -3.9563 24 6 1.0756 -9.1571 -3.0442 25 6 2.2236 -3.6909 -0.1253 26 1 -0.4850 0.8399 -0.0004 27 1 -0.2285 -1.9340 1.2624 28 1 -0.6065 -2.1830 -1.1207 29 1 0.8745 -2.1837 -2.1364 30 1 -0.5059 -4.5598 -0.7718 31 1 0.0679 -4.4324 -2.4629 32 1 2.1181 -8.0433 -0.1090 33 1 3.6198 -7.5511 -3.1889 34 1 3.9605 -8.2879 -1.5917 35 1 3.4966 -10.5131 -2.3968 36 1 4.3080 -9.7721 -3.8156 37 1 1.8658 -10.8679 -4.1373 38 1 2.2133 -9.2836 -4.8982 39 1 0.5525 -9.9141 -2.4598 40 1 0.3638 -8.5916 -3.6456 41 1 3.1681 -3.3551 -0.5532 42 1 2.3954 -4.1343 0.8555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844019467.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:55 Heat of formation + Delta-G solvation = -248.911604 kcal Electronic energy + Delta-G solvation = -29303.385270 eV Core-core repulsion = 24918.297830 eV Total energy + Delta-G solvation = -4385.087440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.53992 -48.47716 -41.43260 -40.16196 -38.92400 -36.29568 -36.05607 -34.23737 -31.93250 -30.84869 -30.21087 -29.87319 -27.75950 -26.24222 -24.04256 -22.37026 -21.83506 -21.24370 -21.07572 -19.40170 -19.14385 -18.90212 -18.89038 -17.34062 -17.12658 -16.95698 -16.82564 -16.45819 -16.13187 -15.66480 -15.44713 -15.22047 -14.91463 -14.84255 -14.75260 -14.40802 -14.06019 -13.94892 -13.86056 -13.67752 -13.48674 -13.29117 -13.15409 -12.88968 -12.69273 -12.54708 -12.35867 -12.30194 -12.15148 -12.07760 -11.82730 -11.56249 -11.43545 -11.32828 -10.93891 -10.65283 -10.21816 -9.96596 -8.27108 -6.42157 0.79991 1.26720 1.42941 1.45114 1.51871 2.28623 2.37714 2.47188 2.72201 2.94439 2.99213 3.39592 3.54555 3.64124 3.70765 3.81373 4.11475 4.14964 4.22041 4.33302 4.36300 4.45096 4.47729 4.50734 4.66713 4.72269 4.82836 4.95551 4.99100 5.01301 5.03700 5.14439 5.20590 5.36053 5.40355 5.44251 5.71920 6.00309 6.07971 6.25754 6.43427 6.61200 7.27123 7.35821 8.78851 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.029778 B = 0.003567 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.059204 B = 7847.272552 C = 7997.740732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.039 3.961 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.565 4.565 8 H 0.056 0.944 9 C 0.237 3.763 10 O -0.591 6.591 11 C -0.125 4.125 12 C 0.099 3.901 13 N -0.589 5.589 14 C 0.484 3.516 15 O -0.529 6.529 16 C 0.264 3.736 17 F -0.181 7.181 18 F -0.174 7.174 19 C 0.110 3.890 20 O -0.542 6.542 21 C -0.137 4.137 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.114 4.114 25 C 0.127 3.873 26 H 0.272 0.728 27 H 0.381 0.619 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.385 0.615 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.053 -15.799 -8.010 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.163 4.163 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.603 4.603 8 H 0.074 0.926 9 C 0.197 3.803 10 O -0.400 6.400 11 C -0.164 4.164 12 C -0.022 4.022 13 N -0.319 5.319 14 C 0.268 3.732 15 O -0.408 6.408 16 C 0.224 3.776 17 F -0.161 7.161 18 F -0.155 7.155 19 C 0.067 3.933 20 O -0.349 6.349 21 C -0.175 4.175 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.151 4.151 25 C 0.005 3.995 26 H 0.082 0.918 27 H 0.232 0.768 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.235 0.765 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.472 -16.856 -8.011 18.721 hybrid contribution 0.079 2.498 0.339 2.522 sum 1.551 -14.358 -7.672 16.353 Atomic orbital electron populations 1.69736 1.06591 1.28588 1.49421 1.25585 0.95855 1.01973 0.92898 0.85593 0.78485 0.78806 0.78629 1.19858 1.20403 1.20156 1.21674 0.93576 0.91486 1.53555 0.92561 1.19564 0.87413 0.90565 0.82780 1.86106 1.51842 1.56477 1.45536 1.23147 1.02064 0.91611 0.99559 1.22715 0.83317 0.95843 1.00375 1.48771 1.19946 1.17245 1.45978 1.20769 0.87057 0.81988 0.83375 1.90722 1.19596 1.73800 1.56652 1.22306 0.78301 0.98321 0.78674 1.93059 1.32651 1.97194 1.93227 1.93052 1.94321 1.92737 1.35401 1.22881 0.98146 0.87010 0.85246 1.86553 1.75162 1.58525 1.14678 1.22996 0.92485 0.99771 1.02239 1.22515 0.98580 0.94931 0.99364 1.22407 0.93249 1.01969 0.97800 1.22276 0.98585 0.98186 0.96066 1.22014 0.96529 0.88271 0.92647 0.91813 0.76846 0.89787 0.92213 0.90344 0.89818 0.76461 0.91183 0.90068 0.90450 0.89378 0.88648 0.90440 0.88796 0.90274 0.90859 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.14 10.67 21.45 0.23 -44.91 16 2 C 0.04 1.94 5.28 84.65 0.45 2.39 16 3 Si 0.96 40.39 29.54 68.60 2.03 42.41 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.56 -28.98 8.21 25.60 0.21 -28.77 16 8 H 0.06 2.90 7.57 -2.91 -0.02 2.88 16 9 C 0.24 11.18 0.85 -10.35 -0.01 11.17 16 10 O -0.59 -28.97 13.08 -148.98 -1.95 -30.92 16 11 C -0.13 -5.34 5.47 31.99 0.17 -5.16 16 12 C 0.10 3.65 5.45 86.86 0.47 4.12 16 13 N -0.59 -22.72 3.33 -811.80 -2.70 -25.42 16 14 C 0.48 17.17 6.60 87.65 0.58 17.75 16 15 O -0.53 -19.59 13.55 -1.50 -0.02 -19.61 16 16 C 0.26 7.95 0.81 29.85 0.02 7.98 16 17 F -0.18 -5.55 14.07 44.97 0.63 -4.92 16 18 F -0.17 -5.15 15.80 44.97 0.71 -4.44 16 19 C 0.11 2.82 0.65 -10.07 -0.01 2.82 16 20 O -0.54 -14.80 12.84 -147.46 -1.89 -16.69 16 21 C -0.14 -3.24 4.43 31.67 0.14 -3.10 16 22 C -0.12 -1.96 6.91 31.89 0.22 -1.74 16 23 C -0.12 -1.79 6.83 31.69 0.22 -1.58 16 24 C -0.11 -2.32 5.90 31.34 0.19 -2.14 16 25 C 0.13 5.52 6.22 86.73 0.54 6.06 16 26 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 27 H 0.38 18.77 7.46 -74.06 -0.55 18.22 16 28 H 0.08 3.71 7.54 -2.39 -0.02 3.70 16 29 H 0.06 2.63 8.04 -2.39 -0.02 2.61 16 30 H 0.08 2.83 8.07 -2.39 -0.02 2.81 16 31 H 0.08 2.76 7.18 -2.39 -0.02 2.74 16 32 H 0.39 10.37 7.38 -74.05 -0.55 9.83 16 33 H 0.07 1.79 7.25 -2.39 -0.02 1.77 16 34 H 0.08 2.09 7.26 -2.39 -0.02 2.07 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.09 1.84 7.95 -2.38 -0.02 1.82 16 40 H 0.08 1.61 7.32 -2.39 -0.02 1.60 16 41 H 0.07 3.23 7.66 -2.39 -0.02 3.21 16 42 H 0.06 2.71 8.07 -2.39 -0.02 2.69 16 Total: -1.00 -54.48 337.44 0.20 -54.28 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: -0.03 Total: 40.44 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 3.20 Total: 9.77 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -2.47 Total: -70.33 kcal Atomic # 8 Polarization: -63.36 SS G_CDS: -3.86 Total: -67.22 kcal Atomic # 9 Polarization: -10.70 SS G_CDS: 1.34 Total: -9.36 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.41 kcal Total: -54.48 0.20 -54.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844019467.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.635 kcal (2) G-P(sol) polarization free energy of solvation -54.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds