Wall clock time and date at job start Tue Mar 31 2020 05:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 5 5 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 6 6 C 1.52997 * 109.47105 * 305.00259 * 4 2 1 7 7 N 1.46500 * 109.47280 * 174.99877 * 6 4 2 8 8 C 1.34781 * 120.00202 * 179.97438 * 7 6 4 9 9 O 1.21279 * 120.00056 * 0.02562 * 8 7 6 10 10 C 1.50698 * 119.99936 * 179.97438 * 8 7 6 11 11 H 1.08997 * 109.35228 * 39.71541 * 10 8 7 12 12 C 1.54066 * 109.36121 * 279.99892 * 10 8 7 13 13 C 1.55599 * 104.29876 * 194.62306 * 12 10 8 14 14 S 1.83447 * 100.72600 * 37.91762 * 13 12 10 15 15 O 1.42099 * 111.24812 * 89.27341 * 14 13 12 16 16 O 1.42093 * 111.24842 * 228.37668 * 14 13 12 17 17 N 1.47073 * 109.35526 * 159.36238 * 10 8 7 18 18 N 1.46502 * 109.47005 * 64.99872 * 4 2 1 19 19 C 1.36939 * 119.99714 * 85.00264 * 18 4 2 20 20 H 1.07995 * 120.00350 * 0.02562 * 19 18 4 21 21 C 1.38817 * 119.99702 * 179.97438 * 19 18 4 22 22 N 1.31615 * 120.00004 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99979 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47182 * 90.00101 * 23 21 19 25 25 H 1.48497 * 109.47375 * 210.00353 * 23 21 19 26 26 H 1.48505 * 109.47109 * 330.00842 * 23 21 19 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 32 32 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 34 34 H 1.08999 * 109.47155 * 294.99659 * 6 4 2 35 35 H 1.08997 * 109.47265 * 54.99796 * 6 4 2 36 36 H 0.97006 * 120.00144 * 359.97438 * 7 6 4 37 37 H 1.08998 * 110.46580 * 313.32626 * 12 10 8 38 38 H 1.09004 * 110.46627 * 75.78697 * 12 10 8 39 39 H 1.08997 * 111.16501 * 155.78805 * 13 12 10 40 40 H 1.09003 * 111.16428 * 280.00711 * 13 12 10 41 41 H 0.96995 * 126.29697 * 329.17493 * 17 10 8 42 42 H 0.97000 * 120.00352 * 265.00346 * 18 4 2 43 43 H 0.97005 * 119.99952 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 1 3.1263 -0.6444 1.2951 6 6 1.4300 -0.0763 2.4952 7 7 1.8228 -0.8398 3.6823 8 6 1.3996 -0.4538 4.9023 9 8 0.6932 0.5254 5.0174 10 6 1.8032 -1.2394 6.1233 11 1 2.8433 -1.5505 6.0251 12 6 0.9069 -2.4864 6.2476 13 6 1.1482 -2.9898 7.7000 14 16 1.2773 -1.3949 8.5971 15 8 0.0041 -0.9526 9.0470 16 8 2.4178 -1.3716 9.4444 17 7 1.6598 -0.3927 7.3172 18 7 1.6525 -2.1328 1.1904 19 6 2.4346 -3.0300 0.5132 20 1 3.3374 -2.6970 0.0228 21 6 2.0677 -4.3676 0.4581 22 7 0.9678 -4.7735 1.0562 23 14 3.1342 -5.5913 -0.4662 24 1 4.1456 -6.1638 0.4582 25 1 2.2827 -6.6820 -1.0052 26 1 3.8224 -4.9009 -1.5866 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.7896 0.9485 2.5870 35 1 0.3435 -0.0737 2.4081 36 1 2.3875 -1.6231 3.5902 37 1 -0.1401 -2.2187 6.1060 38 1 1.2067 -3.2449 5.5244 39 1 0.3023 -3.5760 8.0589 40 1 2.0757 -3.5581 7.7705 41 1 1.7679 0.5705 7.3544 42 1 0.8418 -2.4320 1.6312 43 1 0.7115 -5.7083 1.0179 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667520073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:56 Heat of formation + Delta-G solvation = -125.413338 kcal Electronic energy + Delta-G solvation = -25808.162256 eV Core-core repulsion = 22014.563240 eV Total energy + Delta-G solvation = -3793.599016 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.09762 -38.97524 -38.13264 -37.40697 -36.93225 -35.18910 -35.01661 -32.70036 -32.17298 -29.58460 -27.94213 -27.46472 -25.51290 -24.10837 -23.46876 -21.46869 -20.60438 -20.10783 -19.28287 -18.88546 -18.30005 -17.53146 -17.20765 -16.73235 -16.67182 -16.05435 -16.00392 -15.53700 -15.34764 -14.91933 -14.86606 -14.54896 -14.43652 -14.19051 -13.95390 -13.64046 -13.41677 -13.25875 -13.09220 -12.97373 -12.83543 -12.77208 -12.64256 -12.49715 -12.43749 -12.19089 -12.05924 -11.83133 -11.55289 -11.48231 -11.21694 -11.08476 -10.81852 -10.44238 -9.96816 -8.91721 -7.85605 -5.12415 -0.75299 1.43058 1.53075 1.56456 1.61557 1.62256 2.24987 2.62183 2.62545 2.96995 3.37048 3.47403 3.49427 3.73848 3.92669 3.93266 3.96903 4.24122 4.27191 4.35662 4.39318 4.47788 4.56705 4.65252 4.77516 4.82505 4.89336 4.91930 4.98462 5.12321 5.18684 5.26136 5.33901 5.49425 5.59667 5.64662 5.70706 6.04150 6.35613 6.60113 7.21777 7.44669 8.16074 8.41989 9.36525 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.003828 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.937766 B = 7313.505824 C = 8913.940037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.172 3.828 5 H 0.058 0.942 6 C 0.117 3.883 7 N -0.704 5.704 8 C 0.510 3.490 9 O -0.573 6.573 10 C 0.095 3.905 11 H 0.140 0.860 12 C -0.124 4.124 13 C -0.557 4.557 14 S 2.581 3.419 15 O -1.003 7.003 16 O -0.991 6.991 17 N -1.087 6.087 18 N -0.723 5.723 19 C -0.229 4.229 20 H 0.074 0.926 21 C -0.061 4.061 22 N -0.961 5.961 23 Si 0.957 3.043 24 H -0.287 1.287 25 H -0.306 1.306 26 H -0.278 1.278 27 H 0.056 0.944 28 H 0.033 0.967 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.415 0.585 37 H 0.091 0.909 38 H 0.140 0.860 39 H 0.171 0.829 40 H 0.178 0.822 41 H 0.436 0.564 42 H 0.376 0.624 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.237 5.633 8.456 10.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 C -0.198 4.198 4 C 0.063 3.937 5 H 0.076 0.924 6 C -0.007 4.007 7 N -0.355 5.355 8 C 0.295 3.705 9 O -0.452 6.452 10 C -0.016 4.016 11 H 0.158 0.842 12 C -0.164 4.164 13 C -0.691 4.691 14 S 2.680 3.320 15 O -0.992 6.992 16 O -0.980 6.980 17 N -0.853 5.853 18 N -0.363 5.363 19 C -0.361 4.361 20 H 0.091 0.909 21 C -0.254 4.254 22 N -0.611 5.611 23 Si 0.788 3.212 24 H -0.214 1.214 25 H -0.233 1.233 26 H -0.203 1.203 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.252 0.748 37 H 0.110 0.890 38 H 0.158 0.842 39 H 0.189 0.811 40 H 0.196 0.804 41 H 0.276 0.724 42 H 0.208 0.792 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.778 6.475 9.436 11.776 hybrid contribution 0.220 -1.122 -1.287 1.722 sum 2.998 5.352 8.149 10.200 Atomic orbital electron populations 1.21725 0.95797 1.00586 1.01180 1.21630 0.95988 0.96303 0.99107 1.21833 1.01051 0.94903 1.02044 1.20642 0.97398 0.83955 0.91701 0.92445 1.21717 0.99738 0.95223 0.84036 1.45982 1.52189 1.31816 1.05550 1.20765 0.79832 0.84914 0.85022 1.90690 1.38840 1.28993 1.86700 1.21871 1.03970 0.90594 0.85198 0.84245 1.22739 1.01325 0.95386 0.96971 1.30702 1.15375 1.17046 1.05986 1.05870 0.73326 0.79269 0.73538 1.93575 1.44322 1.80402 1.80895 1.93585 1.51850 1.86852 1.65743 1.54944 1.89668 1.18914 1.21766 1.42503 1.28061 1.02566 1.63217 1.19482 1.03300 0.88813 1.24523 0.90851 1.25256 0.98837 0.98712 1.02591 1.69773 1.26040 1.15314 1.50019 0.85391 0.77945 0.79224 0.78601 1.21386 1.23305 1.20344 0.92519 0.94741 0.92676 0.92997 0.92184 0.92334 0.92283 0.90352 0.92345 0.74788 0.88990 0.84176 0.81114 0.80398 0.72354 0.79185 0.94284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 8.60 71.98 0.62 -3.51 16 2 C -0.11 -3.27 2.88 -10.80 -0.03 -3.31 16 3 C -0.14 -3.28 8.95 71.98 0.64 -2.63 16 4 C 0.17 5.51 2.22 44.99 0.10 5.61 16 5 H 0.06 1.83 8.08 -2.39 -0.02 1.81 16 6 C 0.12 3.39 4.53 86.38 0.39 3.78 16 7 N -0.70 -18.69 5.39 -463.07 -2.50 -21.19 16 8 C 0.51 13.58 7.05 87.66 0.62 14.20 16 9 O -0.57 -19.50 16.42 -3.03 -0.05 -19.55 16 10 C 0.10 1.80 3.41 44.50 0.15 1.96 16 11 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 12 C -0.12 -1.97 6.09 31.85 0.19 -1.78 16 13 C -0.56 -6.15 7.51 72.88 0.55 -5.60 16 14 S 2.58 51.74 6.49 -56.49 -0.37 51.37 16 15 O -1.00 -28.87 18.13 -127.76 -2.32 -31.19 16 16 O -0.99 -25.56 18.14 -127.76 -2.32 -27.87 16 17 N -1.09 -22.52 6.31 -169.98 -1.07 -23.60 16 18 N -0.72 -29.64 4.01 -322.96 -1.30 -30.94 16 19 C -0.23 -10.81 9.93 84.03 0.83 -9.97 16 20 H 0.07 3.38 7.83 -2.91 -0.02 3.36 16 21 C -0.06 -3.07 5.50 84.86 0.47 -2.60 16 22 N -0.96 -51.87 13.06 21.65 0.28 -51.58 16 23 Si 0.96 41.77 29.55 68.60 2.03 43.79 16 24 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.31 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 27 H 0.06 1.61 6.23 -2.39 -0.01 1.59 16 28 H 0.03 1.25 7.75 -2.39 -0.02 1.23 16 29 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.31 6.68 -2.39 -0.02 1.29 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 2.11 6.81 -2.39 -0.02 2.09 16 35 H 0.06 1.87 6.06 -2.39 -0.01 1.85 16 36 H 0.41 10.59 8.14 -92.70 -0.75 9.84 16 37 H 0.09 1.69 8.10 -2.39 -0.02 1.67 16 38 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.17 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.18 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.44 9.23 8.76 -93.02 -0.82 8.42 16 42 H 0.38 16.97 7.80 -92.71 -0.72 16.25 16 43 H 0.25 13.30 8.31 -92.70 -0.77 12.53 16 Total: -1.00 -72.54 361.19 -4.31 -76.85 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: -1.24 Total: 37.75 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 4.54 Total: -3.85 kcal Atomic # 7 Polarization: -122.72 SS G_CDS: -4.58 Total: -127.30 kcal Atomic # 8 Polarization: -73.93 SS G_CDS: -4.68 Total: -78.61 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 51.74 SS G_CDS: -0.37 Total: 51.37 kcal Total: -72.54 -4.31 -76.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667520073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.565 kcal (2) G-P(sol) polarization free energy of solvation -72.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds