Wall clock time and date at job start Tue Mar 31 2020 05:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46685 * 2 1 4 4 N 1.46500 * 109.47444 * 240.00369 * 2 1 3 5 5 S 1.65595 * 120.00578 * 94.99569 * 4 2 1 6 6 C 1.81406 * 104.44769 * 64.99859 * 5 4 2 7 7 O 1.42096 * 104.28278 * 181.07198 * 5 4 2 8 8 O 1.42102 * 104.27607 * 308.93587 * 5 4 2 9 9 C 1.50697 * 109.47123 * 119.99835 * 2 1 3 10 10 O 1.21284 * 119.99827 * 102.09929 * 9 2 1 11 11 N 1.34775 * 120.00175 * 282.09860 * 9 2 1 12 12 C 1.46924 * 120.63248 * 174.99154 * 11 9 2 13 13 C 1.53191 * 108.89432 * 126.45978 * 12 11 9 14 14 C 1.53050 * 109.31251 * 54.56645 * 13 12 11 15 15 C 1.53042 * 109.53365 * 298.63436 * 14 13 12 16 16 H 1.08998 * 109.49781 * 301.37933 * 15 14 13 17 17 N 1.46501 * 109.49341 * 181.31962 * 15 14 13 18 18 C 1.36929 * 120.00513 * 84.99986 * 17 15 14 19 19 H 1.08008 * 119.99758 * 359.97438 * 18 17 15 20 20 C 1.38807 * 120.00370 * 179.97438 * 18 17 15 21 21 N 1.31621 * 120.00286 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00078 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47011 * 59.99885 * 22 20 18 24 24 H 1.48501 * 109.46884 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47136 * 299.99900 * 22 20 18 26 26 C 1.46967 * 120.65390 * 354.80548 * 11 9 2 27 27 H 1.08999 * 109.47173 * 303.48958 * 1 2 3 28 28 H 1.09005 * 109.46979 * 63.49226 * 1 2 3 29 29 H 1.09006 * 109.46880 * 183.48845 * 1 2 3 30 30 H 0.96999 * 119.99442 * 274.99844 * 4 2 1 31 31 H 1.08998 * 109.47027 * 60.00420 * 6 5 4 32 32 H 1.08994 * 109.47123 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.47374 * 300.00147 * 6 5 4 34 34 H 1.08994 * 109.58866 * 6.60104 * 12 11 9 35 35 H 1.09001 * 109.58503 * 246.31602 * 12 11 9 36 36 H 1.09002 * 109.49568 * 174.51331 * 13 12 11 37 37 H 1.08998 * 109.50042 * 294.61103 * 13 12 11 38 38 H 1.08995 * 109.46058 * 58.65544 * 14 13 12 39 39 H 1.09000 * 109.45588 * 178.62541 * 14 13 12 40 40 H 0.97004 * 119.99867 * 264.99620 * 17 15 14 41 41 H 0.96995 * 120.00492 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.46226 * 113.75063 * 26 11 9 43 43 H 1.09002 * 109.71205 * 353.46680 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 16 2.4122 0.1772 -2.5505 6 6 3.8313 1.1874 -2.0440 7 8 2.8123 -0.8074 -3.4936 8 8 1.2751 0.9967 -2.7846 9 6 2.0323 -0.7104 1.2305 10 8 2.4420 -1.8490 1.1485 11 7 2.0263 -0.0804 2.4219 12 6 2.4092 -0.7939 3.6479 13 6 3.5110 -0.0021 4.3591 14 6 3.0337 1.4335 4.5906 15 6 2.7510 2.1023 3.2434 16 1 3.6559 2.0933 2.6358 17 7 2.3244 3.4862 3.4646 18 6 3.2593 4.4759 3.6109 19 1 4.3114 4.2362 3.5635 20 6 2.8550 5.7873 3.8199 21 7 1.5730 6.0796 3.8771 22 14 4.1306 7.1373 4.0202 23 1 4.9693 7.2111 2.7970 24 1 3.4457 8.4380 4.2307 25 1 4.9906 6.8358 5.1926 26 6 1.6406 1.3344 2.5196 27 1 -0.3633 0.5670 0.8570 28 1 -0.3633 0.4587 -0.9197 29 1 -0.3633 -1.0258 0.0625 30 1 2.1110 -1.6561 -1.1949 31 1 4.6459 0.5364 -1.7267 32 1 4.1604 1.7987 -2.8842 33 1 3.5399 1.8344 -1.2166 34 1 2.7795 -1.7867 3.3924 35 1 1.5431 -0.8845 4.3035 36 1 3.7344 -0.4703 5.3177 37 1 4.4086 0.0081 3.7407 38 1 2.1223 1.4212 5.1883 39 1 3.8065 1.9924 5.1183 40 1 1.3795 3.7015 3.5074 41 1 1.2905 6.9958 4.0236 42 1 0.7109 1.4193 3.0822 43 1 1.5021 1.7475 1.5204 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209828836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:55 Heat of formation + Delta-G solvation = -92.152043 kcal Electronic energy + Delta-G solvation = -26224.173128 eV Core-core repulsion = 22432.016431 eV Total energy + Delta-G solvation = -3792.156698 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.43401 -37.71789 -37.27271 -36.14578 -35.62925 -34.45434 -32.60454 -31.48811 -29.93261 -29.62842 -28.39235 -25.82711 -23.93749 -23.86704 -21.90412 -20.33151 -19.80303 -19.21511 -18.19480 -17.44522 -16.69313 -16.67051 -16.39901 -15.63998 -15.42908 -14.85910 -14.73958 -14.18181 -14.05071 -13.74608 -13.54607 -13.42290 -13.36418 -13.34141 -12.95683 -12.77619 -12.46751 -12.31884 -12.26375 -12.16361 -11.90212 -11.83391 -11.29568 -11.21992 -11.05908 -10.99236 -10.78944 -10.55047 -10.50424 -10.23341 -10.04823 -9.81482 -9.58360 -9.03558 -8.59154 -7.13669 -5.90318 -3.21079 0.06791 2.32963 2.52950 2.96507 3.35137 3.40555 3.41387 3.60317 4.01024 4.22302 4.47306 4.51861 4.58064 4.77951 4.89064 4.99447 5.11135 5.14981 5.18778 5.31562 5.45135 5.47442 5.51851 5.61013 5.66768 5.72028 5.76506 5.84453 5.99412 6.07403 6.20433 6.25474 6.29265 6.55788 6.69677 6.78574 6.88276 7.35223 7.56875 8.03622 8.27167 9.38957 9.91725 10.26727 11.31644 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.004164 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.911893 B = 6723.389300 C = 8107.473685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.132 3.868 3 H 0.108 0.892 4 N -1.102 6.102 5 S 2.615 3.385 6 C -0.676 4.676 7 O -0.959 6.959 8 O -0.951 6.951 9 C 0.514 3.486 10 O -0.542 6.542 11 N -0.599 5.599 12 C 0.112 3.888 13 C -0.132 4.132 14 C -0.138 4.138 15 C 0.167 3.833 16 H 0.051 0.949 17 N -0.721 5.721 18 C -0.245 4.245 19 H 0.070 0.930 20 C -0.007 4.007 21 N -0.930 5.930 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.093 3.907 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.425 0.575 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.385 0.615 41 H 0.258 0.742 42 H 0.075 0.925 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 -12.973 -6.376 14.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.021 3.979 3 H 0.126 0.874 4 N -0.863 5.863 5 S 2.707 3.293 6 C -0.826 4.826 7 O -0.950 6.950 8 O -0.941 6.941 9 C 0.300 3.700 10 O -0.419 6.419 11 N -0.332 5.332 12 C -0.010 4.010 13 C -0.171 4.171 14 C -0.178 4.178 15 C 0.056 3.944 16 H 0.069 0.931 17 N -0.363 5.363 18 C -0.376 4.376 19 H 0.088 0.912 20 C -0.204 4.204 21 N -0.577 5.577 22 Si 0.737 3.263 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C -0.030 4.030 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.262 0.738 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.219 0.781 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.543 -13.280 -7.246 15.138 hybrid contribution 0.994 0.886 0.900 1.607 sum 1.537 -12.394 -6.347 14.009 Atomic orbital electron populations 1.22249 0.91854 1.03656 1.04715 1.20705 0.96927 0.96187 0.84075 0.87420 1.55523 1.81750 1.20397 1.28606 1.04766 0.76563 0.74981 0.73039 1.30554 1.21755 1.16798 1.13477 1.93617 1.84600 1.57895 1.58844 1.93635 1.46261 1.70619 1.83590 1.20550 0.78109 0.86860 0.84476 1.90656 1.47503 1.18434 1.85325 1.48103 1.66203 1.12085 1.06856 1.21641 0.98027 0.96418 0.84916 1.21928 0.98034 0.97098 1.00074 1.22288 1.01542 0.93560 1.00454 1.20487 0.94820 0.85622 0.93515 0.93088 1.42305 1.06764 1.00562 1.86627 1.19122 0.88877 0.87192 1.42432 0.91203 1.24736 0.95998 0.97329 1.02337 1.69633 1.13135 1.19014 1.55922 0.86287 0.80459 0.81540 0.77967 1.21218 1.21597 1.21219 1.22329 0.99456 0.78823 1.02431 0.90481 0.89408 0.91452 0.73763 0.85102 0.85059 0.85000 0.89372 0.91450 0.91292 0.91935 0.92340 0.91469 0.78093 0.93262 0.90663 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 9.36 37.16 0.35 -1.35 16 2 C 0.13 1.44 2.24 -69.09 -0.15 1.29 16 3 H 0.11 1.04 5.45 -51.93 -0.28 0.76 16 4 N -1.10 -11.30 5.27 -5.88 -0.03 -11.33 16 5 S 2.61 26.54 6.02 -107.50 -0.65 25.89 16 6 C -0.68 -5.30 10.78 101.05 1.09 -4.21 16 7 O -0.96 -12.57 18.08 -57.54 -1.04 -13.61 16 8 O -0.95 -12.41 17.06 -57.54 -0.98 -13.39 16 9 C 0.51 6.63 6.95 -10.99 -0.08 6.55 16 10 O -0.54 -8.22 15.43 5.55 0.09 -8.13 16 11 N -0.60 -7.57 2.98 -172.74 -0.51 -8.08 16 12 C 0.11 1.34 6.43 -3.71 -0.02 1.32 16 13 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 14 C -0.14 -2.13 5.47 -26.68 -0.15 -2.28 16 15 C 0.17 2.81 2.92 -67.81 -0.20 2.62 16 16 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 17 N -0.72 -15.88 5.12 -53.31 -0.27 -16.15 16 18 C -0.25 -6.21 9.93 -15.06 -0.15 -6.35 16 19 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 20 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 21 N -0.93 -26.18 13.06 55.49 0.72 -25.45 16 22 Si 0.91 21.11 29.55 -169.99 -5.02 16.09 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.09 1.25 5.07 -3.69 -0.02 1.23 16 27 H 0.08 0.73 7.29 -51.93 -0.38 0.35 16 28 H 0.09 0.93 7.38 -51.93 -0.38 0.54 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.43 4.32 8.05 -34.47 -0.28 4.05 16 31 H 0.13 0.90 8.14 -51.92 -0.42 0.47 16 32 H 0.13 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.13 1.01 7.44 -51.92 -0.39 0.63 16 34 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.39 9.00 7.80 -40.82 -0.32 8.68 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.09 1.07 5.31 -51.93 -0.28 0.79 16 LS Contribution 357.84 15.07 5.39 5.39 Total: -1.00 -33.47 357.84 -8.33 -41.80 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.44 Total: 10.24 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 0.41 Total: -3.26 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -0.09 Total: -61.01 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -1.94 Total: -35.14 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 26.54 SS G_CDS: -0.65 Total: 25.89 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.47 -8.33 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209828836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.352 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds