Wall clock time and date at job start Tue Mar 31 2020 05:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46685 * 2 1 4 4 N 1.46500 * 109.47444 * 240.00369 * 2 1 3 5 5 S 1.65595 * 120.00578 * 94.99569 * 4 2 1 6 6 C 1.81406 * 104.44769 * 64.99859 * 5 4 2 7 7 O 1.42096 * 104.28278 * 181.07198 * 5 4 2 8 8 O 1.42102 * 104.27607 * 308.93587 * 5 4 2 9 9 C 1.50697 * 109.47123 * 119.99835 * 2 1 3 10 10 O 1.21284 * 119.99827 * 102.09929 * 9 2 1 11 11 N 1.34775 * 120.00175 * 282.09860 * 9 2 1 12 12 C 1.46924 * 120.63248 * 174.99154 * 11 9 2 13 13 C 1.53191 * 108.89432 * 126.45978 * 12 11 9 14 14 C 1.53050 * 109.31251 * 54.56645 * 13 12 11 15 15 C 1.53042 * 109.53365 * 298.63436 * 14 13 12 16 16 H 1.08998 * 109.49781 * 301.37933 * 15 14 13 17 17 N 1.46501 * 109.49341 * 181.31962 * 15 14 13 18 18 C 1.36929 * 120.00513 * 84.99986 * 17 15 14 19 19 H 1.08008 * 119.99758 * 359.97438 * 18 17 15 20 20 C 1.38807 * 120.00370 * 179.97438 * 18 17 15 21 21 N 1.31621 * 120.00286 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00078 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47011 * 59.99885 * 22 20 18 24 24 H 1.48501 * 109.46884 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47136 * 299.99900 * 22 20 18 26 26 C 1.46967 * 120.65390 * 354.80548 * 11 9 2 27 27 H 1.08999 * 109.47173 * 303.48958 * 1 2 3 28 28 H 1.09005 * 109.46979 * 63.49226 * 1 2 3 29 29 H 1.09006 * 109.46880 * 183.48845 * 1 2 3 30 30 H 0.96999 * 119.99442 * 274.99844 * 4 2 1 31 31 H 1.08998 * 109.47027 * 60.00420 * 6 5 4 32 32 H 1.08994 * 109.47123 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.47374 * 300.00147 * 6 5 4 34 34 H 1.08994 * 109.58866 * 6.60104 * 12 11 9 35 35 H 1.09001 * 109.58503 * 246.31602 * 12 11 9 36 36 H 1.09002 * 109.49568 * 174.51331 * 13 12 11 37 37 H 1.08998 * 109.50042 * 294.61103 * 13 12 11 38 38 H 1.08995 * 109.46058 * 58.65544 * 14 13 12 39 39 H 1.09000 * 109.45588 * 178.62541 * 14 13 12 40 40 H 0.97004 * 119.99867 * 264.99620 * 17 15 14 41 41 H 0.96995 * 120.00492 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.46226 * 113.75063 * 26 11 9 43 43 H 1.09002 * 109.71205 * 353.46680 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 16 2.4122 0.1772 -2.5505 6 6 3.8313 1.1874 -2.0440 7 8 2.8123 -0.8074 -3.4936 8 8 1.2751 0.9967 -2.7846 9 6 2.0323 -0.7104 1.2305 10 8 2.4420 -1.8490 1.1485 11 7 2.0263 -0.0804 2.4219 12 6 2.4092 -0.7939 3.6479 13 6 3.5110 -0.0021 4.3591 14 6 3.0337 1.4335 4.5906 15 6 2.7510 2.1023 3.2434 16 1 3.6559 2.0933 2.6358 17 7 2.3244 3.4862 3.4646 18 6 3.2593 4.4759 3.6109 19 1 4.3114 4.2362 3.5635 20 6 2.8550 5.7873 3.8199 21 7 1.5730 6.0796 3.8771 22 14 4.1306 7.1373 4.0202 23 1 4.9693 7.2111 2.7970 24 1 3.4457 8.4380 4.2307 25 1 4.9906 6.8358 5.1926 26 6 1.6406 1.3344 2.5196 27 1 -0.3633 0.5670 0.8570 28 1 -0.3633 0.4587 -0.9197 29 1 -0.3633 -1.0258 0.0625 30 1 2.1110 -1.6561 -1.1949 31 1 4.6459 0.5364 -1.7267 32 1 4.1604 1.7987 -2.8842 33 1 3.5399 1.8344 -1.2166 34 1 2.7795 -1.7867 3.3924 35 1 1.5431 -0.8845 4.3035 36 1 3.7344 -0.4703 5.3177 37 1 4.4086 0.0081 3.7407 38 1 2.1223 1.4212 5.1883 39 1 3.8065 1.9924 5.1183 40 1 1.3795 3.7015 3.5074 41 1 1.2905 6.9958 4.0236 42 1 0.7109 1.4193 3.0822 43 1 1.5021 1.7475 1.5204 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209828836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:54 Heat of formation + Delta-G solvation = -118.648776 kcal Electronic energy + Delta-G solvation = -26225.322113 eV Core-core repulsion = 22432.016431 eV Total energy + Delta-G solvation = -3793.305682 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.48240 -38.89747 -38.21104 -37.07480 -36.56951 -36.00605 -33.86566 -33.02673 -30.81016 -30.31788 -29.90435 -26.89105 -25.68580 -24.86796 -23.10654 -21.54594 -20.64638 -20.29753 -19.30573 -18.95237 -17.76082 -17.67649 -17.23718 -16.81898 -16.51544 -16.23834 -15.78111 -15.59830 -15.27428 -15.07866 -14.73957 -14.44482 -14.31693 -14.09708 -14.00963 -13.82990 -13.53784 -13.40920 -13.21705 -13.11308 -12.91942 -12.83657 -12.76838 -12.69788 -12.32846 -12.20971 -12.13208 -12.06947 -11.82278 -11.70491 -11.53280 -11.04810 -10.81961 -10.51227 -9.69584 -8.97203 -7.90837 -5.18851 -0.73392 1.39886 1.51747 1.52301 1.58264 1.59726 1.97860 2.59431 2.81049 3.21224 3.26580 3.42812 3.64208 3.89585 3.95420 4.00707 4.02299 4.08311 4.12623 4.13461 4.31892 4.39010 4.42427 4.59016 4.76248 4.79559 4.86220 4.89554 4.94570 4.97828 5.08308 5.13673 5.25992 5.40620 5.48918 5.53883 5.61497 5.95297 6.28260 6.34019 7.01252 7.39049 8.11836 8.35560 9.31620 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.004164 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.911893 B = 6723.389300 C = 8107.473685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.129 3.871 3 H 0.122 0.878 4 N -1.102 6.102 5 S 2.629 3.371 6 C -0.665 4.665 7 O -0.991 6.991 8 O -0.983 6.983 9 C 0.517 3.483 10 O -0.564 6.564 11 N -0.597 5.597 12 C 0.111 3.889 13 C -0.121 4.121 14 C -0.131 4.131 15 C 0.162 3.838 16 H 0.045 0.955 17 N -0.731 5.731 18 C -0.236 4.236 19 H 0.073 0.927 20 C -0.066 4.066 21 N -0.964 5.964 22 Si 0.962 3.038 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.282 1.282 26 C 0.103 3.897 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.426 0.574 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.138 0.862 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.377 0.623 41 H 0.250 0.750 42 H 0.083 0.917 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.539 -13.636 -6.266 15.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.018 3.982 3 H 0.139 0.861 4 N -0.861 5.861 5 S 2.724 3.276 6 C -0.818 4.818 7 O -0.982 6.982 8 O -0.973 6.973 9 C 0.304 3.696 10 O -0.443 6.443 11 N -0.329 5.329 12 C -0.011 4.011 13 C -0.160 4.160 14 C -0.171 4.171 15 C 0.053 3.947 16 H 0.063 0.937 17 N -0.371 5.371 18 C -0.368 4.368 19 H 0.091 0.909 20 C -0.259 4.259 21 N -0.614 5.614 22 Si 0.792 3.208 23 H -0.205 1.205 24 H -0.225 1.225 25 H -0.209 1.209 26 C -0.020 4.020 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.263 0.737 31 H 0.164 0.836 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.209 0.791 41 H 0.059 0.941 42 H 0.101 0.899 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.445 -14.008 -7.146 15.792 hybrid contribution 0.782 1.012 0.888 1.557 sum 2.227 -12.996 -6.258 14.595 Atomic orbital electron populations 1.22256 0.91350 1.03913 1.04899 1.20803 0.97370 0.96651 0.83378 0.86055 1.55413 1.82059 1.20463 1.28207 1.04199 0.76608 0.74376 0.72463 1.30447 1.20198 1.16654 1.14483 1.93573 1.85063 1.59299 1.60246 1.93592 1.48536 1.71040 1.84167 1.20798 0.77483 0.86558 0.84796 1.90651 1.48530 1.19461 1.85621 1.48085 1.66057 1.11573 1.07208 1.21722 0.98435 0.96139 0.84784 1.21831 0.97858 0.95018 1.01247 1.22121 1.00802 0.95172 0.99002 1.20672 0.95729 0.83769 0.94545 0.93690 1.42427 1.05878 1.02174 1.86636 1.19447 0.89592 0.87881 1.39844 0.90899 1.25386 0.97411 0.99398 1.03725 1.69766 1.14661 1.18732 1.58268 0.85391 0.78503 0.78872 0.78044 1.20517 1.22545 1.20855 1.22127 0.98218 0.78910 1.02790 0.89626 0.89799 0.91308 0.73730 0.83610 0.83159 0.84305 0.89280 0.89978 0.89171 0.92329 0.92482 0.93754 0.79053 0.94080 0.89901 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.36 71.98 0.67 -2.46 16 2 C 0.13 2.59 2.24 44.24 0.10 2.69 16 3 H 0.12 2.08 5.45 -2.38 -0.01 2.06 16 4 N -1.10 -21.26 5.27 -172.52 -0.91 -22.17 16 5 S 2.63 50.65 6.02 -56.49 -0.34 50.31 16 6 C -0.66 -8.74 10.78 113.37 1.22 -7.51 16 7 O -0.99 -25.48 18.08 -127.65 -2.31 -27.79 16 8 O -0.98 -25.03 17.06 -127.65 -2.18 -27.21 16 9 C 0.52 12.28 6.95 87.66 0.61 12.89 16 10 O -0.56 -16.11 15.43 -3.04 -0.05 -16.16 16 11 N -0.60 -13.68 2.98 -818.83 -2.44 -16.12 16 12 C 0.11 2.37 6.43 86.36 0.56 2.93 16 13 C -0.12 -2.70 6.08 30.67 0.19 -2.51 16 14 C -0.13 -3.84 5.47 30.62 0.17 -3.67 16 15 C 0.16 5.24 2.92 45.07 0.13 5.37 16 16 H 0.05 1.52 8.08 -2.39 -0.02 1.50 16 17 N -0.73 -31.64 5.12 -322.58 -1.65 -33.29 16 18 C -0.24 -11.77 9.93 84.03 0.83 -10.93 16 19 H 0.07 3.53 7.83 -2.91 -0.02 3.51 16 20 C -0.07 -3.51 5.50 84.86 0.47 -3.04 16 21 N -0.96 -54.69 13.06 21.65 0.28 -54.40 16 22 Si 0.96 43.23 29.55 68.60 2.03 45.26 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 C 0.10 2.56 5.07 86.35 0.44 3.00 16 27 H 0.08 1.46 7.29 -2.39 -0.02 1.44 16 28 H 0.08 1.69 7.38 -2.38 -0.02 1.67 16 29 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.43 8.30 8.05 -96.75 -0.78 7.52 16 31 H 0.15 1.56 8.14 -2.39 -0.02 1.55 16 32 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.14 1.73 7.44 -2.39 -0.02 1.71 16 34 H 0.09 1.96 7.00 -2.39 -0.02 1.95 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.38 17.49 7.80 -92.71 -0.72 16.77 16 41 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.10 2.21 5.31 -2.39 -0.01 2.20 16 Total: -1.00 -70.76 357.84 -2.64 -73.41 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.46 Total: 31.41 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 5.38 Total: -3.26 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -4.72 Total: -125.98 kcal Atomic # 8 Polarization: -66.62 SS G_CDS: -4.53 Total: -71.15 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 50.65 SS G_CDS: -0.34 Total: 50.31 kcal Total: -70.76 -2.64 -73.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209828836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.240 kcal (2) G-P(sol) polarization free energy of solvation -70.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds