Wall clock time and date at job start Tue Mar 31 2020 04:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34481 * 126.83890 * 2 1 4 4 N 1.36451 * 108.86127 * 179.70451 * 3 2 1 5 5 H 0.96996 * 124.85172 * 180.30270 * 4 3 2 6 6 C 1.34656 * 110.29242 * 0.43803 * 4 3 2 7 7 C 1.36773 * 108.39972 * 359.56520 * 6 4 3 8 8 C 1.47265 * 126.94218 * 180.25982 * 7 6 4 9 9 O 1.21626 * 119.99933 * 220.44312 * 8 7 6 10 10 N 1.34771 * 119.99875 * 40.44971 * 8 7 6 11 11 C 1.46842 * 120.41042 * 4.99983 * 10 8 7 12 12 C 1.53828 * 109.00098 * 127.69359 * 11 10 8 13 13 C 1.52794 * 108.73024 * 54.08134 * 12 11 10 14 14 H 1.08998 * 108.94867 * 56.77650 * 13 12 11 15 15 O 1.42599 * 111.11444 * 177.30103 * 13 12 11 16 16 C 1.43151 * 113.62840 * 183.62205 * 15 13 12 17 17 C 1.53192 * 109.74002 * 298.31214 * 16 15 13 18 18 N 1.47359 * 108.79923 * 51.21483 * 17 16 15 19 19 C 1.36932 * 121.30055 * 129.74152 * 18 17 16 20 20 H 1.07998 * 120.00089 * 206.51738 * 19 18 17 21 21 C 1.38815 * 120.00281 * 26.51726 * 19 18 17 22 22 N 1.31622 * 119.99836 * 14.77080 * 21 19 18 23 23 Si 1.86796 * 120.00105 * 194.77447 * 21 19 18 24 24 H 1.48509 * 109.47157 * 90.00267 * 23 21 19 25 25 H 1.48497 * 109.46924 * 209.99778 * 23 21 19 26 26 H 1.48494 * 109.47195 * 330.00137 * 23 21 19 27 27 C 1.46870 * 117.39667 * 309.76098 * 18 17 16 28 28 H 1.09006 * 109.65326 * 291.64605 * 27 18 17 29 29 C 1.47127 * 120.40677 * 185.27776 * 10 8 7 30 30 H 1.09005 * 109.47290 * 270.04805 * 1 2 3 31 31 H 1.09007 * 109.46878 * 30.04460 * 1 2 3 32 32 H 1.08999 * 109.47563 * 150.03942 * 1 2 3 33 33 H 1.08009 * 125.56926 * 359.96020 * 3 2 1 34 34 H 1.08005 * 125.80119 * 179.82454 * 6 4 3 35 35 H 1.09000 * 109.51000 * 247.68639 * 11 10 8 36 36 H 1.09006 * 109.50746 * 7.81890 * 11 10 8 37 37 H 1.08997 * 109.73347 * 294.24210 * 12 11 10 38 38 H 1.08996 * 109.50473 * 173.78934 * 12 11 10 39 39 H 1.09004 * 109.42481 * 178.22808 * 16 15 13 40 40 H 1.09004 * 109.37740 * 58.36998 * 16 15 13 41 41 H 1.09003 * 109.58063 * 291.42385 * 17 16 15 42 42 H 1.09001 * 109.58229 * 171.01199 * 17 16 15 43 43 H 0.96995 * 119.99742 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.72642 * 352.88641 * 29 10 8 45 45 H 1.09000 * 109.72951 * 113.56559 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6551 0.0067 5 1 4.3840 1.2412 0.0122 6 6 3.6656 -0.6903 0.0014 7 6 2.3863 -1.1741 0.0009 8 6 1.9748 -2.5881 0.0012 9 8 1.0355 -2.9483 -0.6824 10 7 2.6389 -3.4830 0.7591 11 6 3.7024 -3.0414 1.6704 12 6 3.4197 -3.5971 3.0766 13 6 3.2441 -5.1118 2.9795 14 1 4.1372 -5.5434 2.5277 15 8 3.0404 -5.6889 4.2675 16 6 2.9513 -7.1175 4.2485 17 6 1.7507 -7.5498 3.4009 18 7 1.8241 -6.8736 2.0937 19 6 1.7068 -7.5739 0.9229 20 1 2.1664 -7.1983 0.0206 21 6 0.9971 -8.7665 0.8956 22 7 0.2011 -9.0817 1.8954 23 14 1.1717 -9.9242 -0.5599 24 1 2.2806 -10.8782 -0.3035 25 1 -0.0946 -10.6766 -0.7487 26 1 1.4680 -9.1385 -1.7846 27 6 2.0286 -5.4192 2.0957 28 1 1.1409 -4.9247 2.4905 29 6 2.3115 -4.9151 0.6792 30 1 -0.3634 0.0009 1.0277 31 1 -0.3633 0.8897 -0.5146 32 1 -0.3634 -0.8903 -0.5132 33 1 1.9868 2.1059 -0.0006 34 1 4.5664 -1.2862 0.0021 35 1 4.6636 -3.4130 1.3152 36 1 3.7228 -1.9521 1.7052 37 1 2.5089 -3.1485 3.4734 38 1 4.2584 -3.3679 3.7339 39 1 2.8280 -7.4866 5.2667 40 1 3.8647 -7.5313 3.8210 41 1 0.8266 -7.2687 3.9062 42 1 1.7760 -8.6298 3.2555 43 1 -0.2951 -9.9149 1.8761 44 1 1.4289 -5.0565 0.0553 45 1 3.1538 -5.4621 0.2556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074409721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:45 Heat of formation + Delta-G solvation = 3.577246 kcal Electronic energy + Delta-G solvation = -28155.860344 eV Core-core repulsion = 24368.243923 eV Total energy + Delta-G solvation = -3787.616421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.34119 -39.66699 -38.21551 -35.89011 -34.66209 -32.50939 -31.91628 -31.30521 -30.25226 -29.31995 -26.96895 -26.60457 -25.26507 -23.89299 -22.71741 -21.84214 -20.79507 -19.99109 -19.58663 -18.63931 -17.79474 -16.73870 -16.52318 -15.46256 -15.31500 -15.16768 -14.91827 -14.43778 -14.32875 -13.96577 -13.84098 -13.63424 -13.46020 -13.04271 -12.95585 -12.80661 -12.72522 -12.51552 -12.40385 -12.15776 -11.76936 -11.43211 -11.25715 -10.95206 -10.90472 -10.76497 -10.55585 -10.20319 -10.16245 -9.92405 -9.57670 -9.51609 -8.93640 -8.62563 -8.49858 -8.33739 -8.20470 -6.69675 -5.79114 -3.24069 1.86929 2.36452 3.05398 3.25068 3.38856 3.46030 3.47541 3.60319 4.31747 4.47371 4.75235 4.84968 4.96713 5.02426 5.20882 5.34157 5.35480 5.41967 5.45922 5.50345 5.61020 5.77887 5.79438 5.79897 5.84822 5.95528 6.00820 6.08265 6.15082 6.20563 6.23698 6.32207 6.38727 6.52894 6.68984 6.74433 6.82739 6.86498 6.96135 7.19445 7.31416 7.55988 7.74882 7.80066 7.94009 8.36800 8.60800 9.14773 9.78019 10.35421 11.28924 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015992 B = 0.004094 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.410341 B = 6838.328253 C = 7860.283714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.114 4.114 3 C -0.026 4.026 4 N -0.554 5.554 5 H 0.416 0.584 6 C 0.036 3.964 7 C -0.213 4.213 8 C 0.587 3.413 9 O -0.537 6.537 10 N -0.609 5.609 11 C 0.107 3.893 12 C -0.123 4.123 13 C 0.078 3.922 14 H 0.051 0.949 15 O -0.390 6.390 16 C 0.039 3.961 17 C 0.142 3.858 18 N -0.589 5.589 19 C -0.256 4.256 20 H 0.073 0.927 21 C 0.005 3.995 22 N -0.903 5.903 23 Si 0.904 3.096 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.277 1.277 27 C 0.137 3.863 28 H 0.038 0.962 29 C 0.125 3.875 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.167 0.833 34 H 0.173 0.827 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.027 0.973 42 H 0.098 0.902 43 H 0.255 0.745 44 H 0.102 0.898 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.148 19.026 0.471 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C -0.153 4.153 4 N -0.148 5.148 5 H 0.252 0.748 6 C -0.099 4.099 7 C -0.223 4.223 8 C 0.376 3.624 9 O -0.414 6.414 10 N -0.343 5.343 11 C -0.016 4.016 12 C -0.162 4.162 13 C 0.019 3.981 14 H 0.069 0.931 15 O -0.309 6.309 16 C -0.039 4.039 17 C 0.016 3.984 18 N -0.313 5.313 19 C -0.385 4.385 20 H 0.091 0.909 21 C -0.194 4.194 22 N -0.547 5.547 23 Si 0.734 3.266 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.203 1.203 27 C 0.029 3.971 28 H 0.055 0.945 29 C 0.003 3.997 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.184 0.816 34 H 0.190 0.810 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.045 0.955 42 H 0.116 0.884 43 H 0.065 0.935 44 H 0.120 0.880 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.589 18.861 0.255 21.160 hybrid contribution 0.498 -0.667 -0.764 1.129 sum 10.087 18.194 -0.508 20.809 Atomic orbital electron populations 1.20214 0.89527 1.02912 1.01856 1.20525 0.95532 0.90364 1.05677 1.21520 0.82486 0.99041 1.12285 1.41451 1.08156 1.06609 1.58590 0.74820 1.21920 0.98461 0.83621 1.05893 1.20407 0.92855 0.93013 1.16060 1.17478 0.81738 0.83981 0.79245 1.90773 1.28091 1.79938 1.42592 1.48135 1.36888 1.08045 1.41184 1.21973 0.90316 1.00459 0.88895 1.21932 1.02906 0.94990 0.96390 1.22406 0.98139 0.92284 0.85308 0.93103 1.87737 1.93897 1.21036 1.28263 1.23339 0.99937 0.80170 1.00418 1.21467 0.92920 0.99658 0.84337 1.44053 1.85137 0.99416 1.02733 1.19178 1.27237 1.03465 0.88574 0.90931 1.25053 0.96249 1.00309 0.97764 1.70009 1.28189 1.24225 1.32308 0.86251 0.77055 0.80995 0.82296 1.21448 1.21658 1.20258 1.21296 0.95160 0.87406 0.93198 0.94484 1.21744 1.02642 0.77058 0.98225 0.91902 0.92147 0.90355 0.81570 0.81013 0.91642 0.88902 0.90867 0.90552 0.90139 0.94189 0.95488 0.88431 0.93535 0.87969 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 10.33 36.00 0.37 -0.71 16 2 C -0.11 -1.44 6.36 -102.54 -0.65 -2.09 16 3 C -0.03 -0.23 11.82 -16.82 -0.20 -0.43 16 4 N -0.55 -4.02 5.90 -12.84 -0.08 -4.10 16 5 H 0.42 1.43 8.96 -40.82 -0.37 1.07 16 6 C 0.04 0.35 9.52 -16.84 -0.16 0.19 16 7 C -0.21 -2.95 5.37 -103.35 -0.56 -3.51 16 8 C 0.59 10.43 7.53 -12.59 -0.09 10.34 16 9 O -0.54 -11.77 15.55 5.25 0.08 -11.68 16 10 N -0.61 -10.18 2.97 -173.73 -0.52 -10.69 16 11 C 0.11 1.34 5.46 -3.42 -0.02 1.33 16 12 C -0.12 -1.78 5.84 -26.41 -0.15 -1.93 16 13 C 0.08 1.45 2.47 -26.63 -0.07 1.39 16 14 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 15 O -0.39 -7.85 10.49 -35.23 -0.37 -8.22 16 16 C 0.04 0.78 6.96 37.26 0.26 1.04 16 17 C 0.14 3.44 5.43 -3.47 -0.02 3.43 16 18 N -0.59 -14.92 3.05 -164.35 -0.50 -15.42 16 19 C -0.26 -6.94 8.90 -15.06 -0.13 -7.07 16 20 H 0.07 1.92 6.25 -52.49 -0.33 1.59 16 21 C 0.01 0.14 5.01 -17.43 -0.09 0.05 16 22 N -0.90 -26.22 11.05 55.49 0.61 -25.61 16 23 Si 0.90 21.85 29.58 -169.99 -5.03 16.82 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 27 C 0.14 3.01 3.03 -67.53 -0.20 2.80 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 29 C 0.12 2.53 4.49 -3.70 -0.02 2.52 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.08 1.18 7.19 -51.93 -0.37 0.81 16 33 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.17 1.23 7.29 -52.48 -0.38 0.85 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.97 4.81 -51.93 -0.25 0.72 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.10 2.57 6.13 -51.93 -0.32 2.25 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.10 2.41 6.78 -51.93 -0.35 2.06 16 45 H 0.07 1.41 7.38 -51.93 -0.38 1.03 16 LS Contribution 351.00 15.07 5.29 5.29 Total: -1.00 -34.53 351.00 -8.77 -43.30 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.54 Total: 2.96 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -1.73 Total: 7.34 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.48 Total: -55.82 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.29 Total: -19.90 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.53 -8.77 -43.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074409721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.881 kcal (2) G-P(sol) polarization free energy of solvation -34.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds