Wall clock time and date at job start Tue Mar 31 2020 05:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35965 * 117.00354 * 2 1 4 4 C 1.38771 * 119.97573 * 179.97438 * 3 2 1 5 5 C 1.38024 * 120.02692 * 180.02562 * 4 3 2 6 6 C 1.39014 * 119.97599 * 0.02562 * 5 4 3 7 7 S 1.76198 * 120.03078 * 180.02562 * 6 5 4 8 8 C 1.76197 * 100.00108 * 172.68658 * 7 6 5 9 9 C 1.38981 * 120.30193 * 102.48901 * 8 7 6 10 10 C 1.37983 * 120.02244 * 180.25230 * 9 8 7 11 11 C 1.39121 * 120.63530 * 359.45467 * 10 9 8 12 12 Cl 1.73605 * 119.69148 * 180.30279 * 11 10 9 13 13 C 1.36464 * 120.61190 * 0.54772 * 11 10 9 14 14 C 1.40746 * 119.95036 * 359.73270 * 13 11 10 15 15 C 1.40934 * 120.30922 * 179.97438 * 14 13 11 16 16 H 1.07995 * 120.00092 * 147.99686 * 15 14 13 17 17 C 1.39838 * 120.00231 * 327.99227 * 15 14 13 18 18 N 1.30935 * 119.99503 * 348.34126 * 17 15 14 19 19 Si 1.86792 * 120.00172 * 168.34090 * 17 15 14 20 20 H 1.48501 * 109.47406 * 60.00005 * 19 17 15 21 21 H 1.48502 * 109.47231 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46985 * 300.00133 * 19 17 15 23 23 C 1.39007 * 119.94024 * 0.27374 * 6 5 4 24 24 C 1.38034 * 119.96861 * 359.45076 * 23 6 5 25 25 H 1.08993 * 109.47303 * 300.00210 * 1 2 3 26 26 H 1.09006 * 109.46747 * 60.00402 * 1 2 3 27 27 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 28 28 H 1.07994 * 119.98082 * 359.97438 * 4 3 2 29 29 H 1.07999 * 120.01288 * 179.97438 * 5 4 3 30 30 H 1.08004 * 119.99013 * 359.97438 * 9 8 7 31 31 H 1.07994 * 119.68019 * 179.70315 * 10 9 8 32 32 H 1.08000 * 120.02402 * 179.74823 * 13 11 10 33 33 H 0.97007 * 119.99306 * 180.02562 * 18 17 15 34 34 H 1.07999 * 120.01977 * 179.72109 * 23 6 5 35 35 H 1.08004 * 119.98457 * 180.27823 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4322 1.2834 0.0005 5 6 4.0599 2.5126 0.0011 6 6 3.3034 3.6788 0.0016 7 16 4.1034 5.2488 0.0016 8 6 2.7087 6.3028 -0.2185 9 6 2.1771 6.9972 0.8617 10 6 1.0816 7.8170 0.6838 11 6 0.5053 7.9673 -0.5735 12 17 -0.8677 9.0113 -0.7709 13 6 1.0062 7.2978 -1.6520 14 6 2.1194 6.4505 -1.4981 15 6 2.6425 5.7550 -2.6067 16 1 3.7003 5.5447 -2.6621 17 6 1.7919 5.3372 -3.6350 18 7 0.4938 5.3840 -3.4703 19 14 2.5075 4.7124 -5.2433 20 1 3.3595 3.5255 -4.9780 21 1 1.4040 4.3348 -6.1625 22 1 3.3279 5.7810 -5.8682 23 6 1.9153 3.6054 0.0074 24 6 1.2899 2.3749 0.0011 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0196 0.3772 0.0014 29 1 5.1385 2.5683 0.0019 30 1 2.6188 6.8916 1.8416 31 1 0.6700 8.3503 1.5279 32 1 0.5489 7.4184 -2.6230 33 1 -0.0963 5.0938 -4.1835 34 1 1.3264 4.5106 0.0123 35 1 0.2114 2.3175 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000346352.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:59 Heat of formation + Delta-G solvation = -8.250824 kcal Electronic energy + Delta-G solvation = -21676.291774 eV Core-core repulsion = 18369.946882 eV Total energy + Delta-G solvation = -3306.344891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 320.038 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.57560 -37.90066 -36.81145 -35.56817 -33.91193 -30.80650 -30.09705 -29.67872 -29.38770 -27.02186 -25.64024 -22.28059 -21.93110 -21.40734 -20.97242 -17.85176 -17.72964 -16.79016 -15.83853 -15.66568 -15.46095 -15.12811 -14.58540 -14.17320 -14.07615 -13.34718 -13.14495 -13.07380 -12.83392 -12.42891 -12.30780 -12.21088 -11.72547 -11.67796 -11.33254 -11.16314 -11.03318 -10.94050 -10.71179 -10.45827 -10.35513 -10.09916 -9.83006 -9.48758 -9.43230 -8.52376 -8.45977 -7.77904 -7.64513 -7.07440 -6.33674 -4.74707 1.81706 1.90924 2.06362 2.57010 2.94033 2.95012 2.98283 3.03631 3.13882 3.54514 3.59571 3.75434 4.25349 4.30930 5.16096 5.20890 5.29551 5.31078 5.41741 5.57187 5.84351 5.85528 5.94914 6.14096 6.17509 6.52035 6.54493 6.64842 6.70787 6.89396 6.91475 6.99821 7.01726 7.16135 7.29430 7.49398 7.55140 7.75188 7.77671 8.19196 8.46025 8.51514 9.86350 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.005509 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.467908 B = 5081.212770 C = 5736.330698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.102 3.898 4 C -0.144 4.144 5 C -0.078 4.078 6 C -0.108 4.108 7 S -0.026 6.026 8 C -0.260 4.260 9 C -0.022 4.022 10 C -0.245 4.245 11 C 0.011 3.989 12 Cl -0.120 7.120 13 C -0.142 4.142 14 C 0.156 3.844 15 C -0.429 4.429 16 H 0.098 0.902 17 C 0.076 3.924 18 N -0.778 5.778 19 Si 0.911 3.089 20 H -0.259 1.259 21 H -0.276 1.276 22 H -0.259 1.259 23 C -0.056 4.056 24 C -0.190 4.190 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.287 0.713 34 H 0.136 0.864 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 -4.987 3.375 6.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.239 6.239 3 C 0.055 3.945 4 C -0.165 4.165 5 C -0.102 4.102 6 C -0.220 4.220 7 S 0.225 5.775 8 C -0.374 4.374 9 C -0.044 4.044 10 C -0.267 4.267 11 C -0.015 4.015 12 Cl -0.091 7.091 13 C -0.163 4.163 14 C 0.149 3.851 15 C -0.457 4.457 16 H 0.116 0.884 17 C -0.145 4.145 18 N -0.401 5.401 19 Si 0.735 3.265 20 H -0.184 1.184 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.079 4.079 24 C -0.210 4.210 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.112 0.888 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.147 0.853 33 H 0.098 0.902 34 H 0.154 0.846 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.215 -4.759 3.352 5.946 hybrid contribution -1.833 -0.340 -1.012 2.121 sum -0.618 -5.098 2.340 5.644 Atomic orbital electron populations 1.22960 0.79073 1.03122 1.01423 1.85998 1.20858 1.27499 1.89513 1.18938 0.92274 0.83748 0.99517 1.20136 0.91136 0.97833 1.07354 1.20502 0.99027 0.90211 1.00490 1.22149 0.96520 0.98541 1.04808 1.83336 1.10996 0.93935 1.89231 1.21508 1.08095 1.11893 0.95891 1.20771 0.93191 0.93871 0.96533 1.20177 1.01986 1.09309 0.95184 1.20584 0.89764 0.95358 0.95831 1.98274 1.45495 1.67464 1.97911 1.21026 0.99816 0.97902 0.97542 1.17541 0.88875 0.87971 0.90668 1.19762 0.96749 1.28519 1.00650 0.88424 1.26010 0.94484 0.93839 1.00160 1.69803 1.03759 1.32969 1.33616 0.86263 0.79769 0.80438 0.80055 1.18362 1.20096 1.18375 1.21197 0.93413 0.97752 0.95549 1.21111 0.99519 0.92224 1.08162 0.92932 0.92768 0.88841 0.85799 0.85679 0.87433 0.87784 0.85308 0.90164 0.84604 0.86100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.12 10.50 -19.63 -0.21 -5.32 16 3 C 0.10 1.79 6.69 -39.19 -0.26 1.53 16 4 C -0.14 -2.42 9.98 -39.46 -0.39 -2.82 16 5 C -0.08 -1.37 9.79 -39.37 -0.39 -1.75 16 6 C -0.11 -2.16 6.09 -39.01 -0.24 -2.39 16 7 S -0.03 -0.52 20.68 -107.50 -2.22 -2.75 16 8 C -0.26 -5.72 3.67 -38.00 -0.14 -5.86 16 9 C -0.02 -0.46 9.74 -39.40 -0.38 -0.85 16 10 C -0.24 -5.04 9.81 -39.35 -0.39 -5.43 16 11 C 0.01 0.25 6.28 -39.89 -0.25 0.00 16 12 Cl -0.12 -2.31 28.93 -51.86 -1.50 -3.81 16 13 C -0.14 -3.34 8.33 -39.27 -0.33 -3.66 16 14 C 0.16 3.70 4.80 -106.63 -0.51 3.18 16 15 C -0.43 -10.24 8.33 -37.96 -0.32 -10.55 16 16 H 0.10 2.33 7.20 -52.49 -0.38 1.95 16 17 C 0.08 1.74 5.21 -17.34 -0.09 1.65 16 18 N -0.78 -18.27 11.12 55.54 0.62 -17.65 16 19 Si 0.91 17.78 29.57 -169.99 -5.03 12.75 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 23 C -0.06 -1.15 9.09 -39.37 -0.36 -1.51 16 24 C -0.19 -3.52 9.03 -39.46 -0.36 -3.87 16 25 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 26 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.11 1.98 8.06 -52.48 -0.42 1.55 16 31 H 0.10 1.94 8.06 -52.49 -0.42 1.51 16 32 H 0.13 3.17 6.51 -52.49 -0.34 2.83 16 33 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 34 H 0.14 3.10 5.76 -52.49 -0.30 2.80 16 35 H 0.12 2.03 6.29 -52.48 -0.33 1.70 16 LS Contribution 328.50 15.07 4.95 4.95 Total: -1.00 -24.88 328.50 -10.19 -35.07 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -3.40 Total: 7.75 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: -3.41 Total: -30.99 kcal Atomic # 7 Polarization: -18.27 SS G_CDS: 0.62 Total: -17.65 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.21 Total: -5.32 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Atomic # 16 Polarization: -0.52 SS G_CDS: -2.22 Total: -2.75 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -1.50 Total: -3.81 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -24.88 -10.19 -35.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000346352.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.821 kcal (2) G-P(sol) polarization free energy of solvation -24.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds