Wall clock time and date at job start Tue Mar 31 2020 04:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36940 * 120.00137 * 2 1 4 4 H 1.08004 * 120.00211 * 203.50944 * 3 2 1 5 5 C 1.38808 * 119.99891 * 23.50053 * 3 2 1 6 6 N 1.31615 * 120.00332 * 15.21432 * 5 3 2 7 7 Si 1.86802 * 120.00113 * 195.21075 * 5 3 2 8 8 H 1.48495 * 109.47091 * 90.00413 * 7 5 3 9 9 H 1.48500 * 109.47343 * 210.00413 * 7 5 3 10 10 H 1.48501 * 109.47132 * 330.00650 * 7 5 3 11 11 C 1.46499 * 119.99971 * 179.97438 * 2 1 3 12 12 H 1.09007 * 110.64170 * 178.31101 * 11 2 1 13 13 C 1.55157 * 110.72028 * 301.45465 * 11 2 1 14 14 C 1.54912 * 101.61477 * 154.02304 * 13 11 2 15 15 N 1.47463 * 104.81159 * 323.04216 * 14 13 11 16 16 C 1.34779 * 125.63059 * 204.05039 * 15 14 13 17 17 O 1.21275 * 120.00199 * 180.02562 * 16 15 14 18 18 C 1.50706 * 119.99599 * 0.02562 * 16 15 14 19 19 H 1.09000 * 109.45430 * 60.00382 * 18 16 15 20 20 C 1.53114 * 109.45397 * 179.97438 * 18 16 15 21 21 C 1.53422 * 109.57378 * 190.09173 * 20 18 16 22 22 C 1.50597 * 108.33583 * 310.18277 * 21 20 18 23 23 N 1.32904 * 129.15958 * 196.48571 * 22 21 20 24 24 N 1.29021 * 108.63438 * 179.90740 * 23 22 21 25 25 N 1.29106 * 110.26156 * 0.02562 * 24 23 22 26 26 H 0.96998 * 126.01302 * 180.02562 * 25 24 23 27 27 C 1.34406 * 107.98270 * 0.05672 * 25 24 23 28 28 C 1.50527 * 129.26015 * 179.76591 * 27 25 24 29 29 C 1.47022 * 108.72475 * 24.07483 * 15 14 13 30 30 H 1.08995 * 109.47118 * 275.22271 * 1 2 3 31 31 H 1.09000 * 109.46946 * 35.21686 * 1 2 3 32 32 H 1.08998 * 109.46807 * 155.21590 * 1 2 3 33 33 H 0.97003 * 120.00686 * 179.97438 * 6 5 3 34 34 H 1.08997 * 111.00241 * 272.11458 * 13 11 2 35 35 H 1.08996 * 111.00639 * 35.92888 * 13 11 2 36 36 H 1.08996 * 110.36609 * 81.84739 * 14 13 11 37 37 H 1.08996 * 110.36490 * 204.16814 * 14 13 11 38 38 H 1.09001 * 109.45279 * 310.12404 * 20 18 16 39 39 H 1.09000 * 109.45294 * 70.05931 * 20 18 16 40 40 H 1.08994 * 109.69149 * 69.89993 * 21 20 18 41 41 H 1.09002 * 109.68445 * 190.43666 * 21 20 18 42 42 H 1.08997 * 109.70455 * 76.86450 * 28 27 25 43 43 H 1.09005 * 109.67788 * 316.28411 * 28 27 25 44 44 H 1.08999 * 109.88198 * 239.55792 * 29 15 14 45 45 H 1.08994 * 109.89070 * 118.39066 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1625 1.2248 -0.3731 5 6 1.5420 2.3382 0.4794 6 7 0.4442 2.2521 1.2002 7 14 2.2824 4.0111 0.1014 8 1 1.7071 4.5325 -1.1643 9 1 1.9741 4.9506 1.2093 10 1 3.7547 3.8800 -0.0411 11 6 2.1975 -1.2687 0.0006 12 1 3.2727 -1.0917 -0.0296 13 6 1.8161 -2.1222 1.2389 14 6 2.1045 -3.5566 0.7299 15 7 1.6993 -3.5421 -0.6879 16 6 1.3362 -4.6194 -1.4118 17 8 1.0210 -4.4897 -2.5757 18 6 1.3220 -5.9852 -0.7749 19 1 0.6281 -5.9865 0.0657 20 6 0.8754 -7.0244 -1.8068 21 6 0.6167 -8.3652 -1.1073 22 6 1.8085 -8.6872 -0.2448 23 7 2.1621 -9.8472 0.2989 24 7 3.2557 -9.6756 0.9616 25 7 3.6404 -8.4460 0.8787 26 1 4.4331 -8.0675 1.2901 27 6 2.7490 -7.7824 0.1228 28 6 2.7307 -6.3307 -0.2750 29 6 1.7574 -2.1583 -1.1812 30 1 -0.3633 0.0935 1.0233 31 1 -0.3633 0.8396 -0.5926 32 1 -0.3633 -0.9330 -0.4308 33 1 0.0197 3.0573 1.5355 34 1 2.4478 -1.8762 2.0924 35 1 0.7620 -2.0005 1.4877 36 1 3.1668 -3.7840 0.8181 37 1 1.5127 -4.2829 1.2869 38 1 -0.0403 -6.6850 -2.2910 39 1 1.6566 -7.1508 -2.5563 40 1 -0.2761 -8.2894 -0.4867 41 1 0.4801 -9.1482 -1.8532 42 1 3.4553 -6.1586 -1.0708 43 1 2.9770 -5.7108 0.5871 44 1 0.7731 -1.8482 -1.5320 45 1 2.4824 -2.0836 -1.9915 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972716607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:38 Heat of formation + Delta-G solvation = 82.502363 kcal Electronic energy + Delta-G solvation = -27222.202388 eV Core-core repulsion = 23470.301168 eV Total energy + Delta-G solvation = -3751.901220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.75289 -40.27555 -37.91514 -36.60206 -34.92561 -34.17460 -31.87222 -30.67251 -30.57991 -29.82942 -27.90583 -26.12188 -25.23613 -23.94802 -23.22990 -22.76084 -22.33519 -20.30274 -19.36452 -19.11362 -18.25403 -17.22695 -17.06273 -16.49601 -16.03306 -15.67003 -15.02721 -14.57058 -14.31835 -14.24684 -14.02830 -13.84508 -13.48527 -13.41468 -12.83917 -12.72285 -12.51215 -12.39417 -12.13087 -11.85775 -11.80721 -11.50309 -11.42618 -11.33829 -11.06563 -10.89575 -10.81214 -10.65932 -10.61121 -10.54587 -10.31670 -9.96626 -9.95183 -9.70435 -9.20145 -8.65189 -8.45252 -6.88586 -5.83560 -3.31298 1.21364 2.21590 2.30822 2.68925 3.04014 3.32627 3.39776 3.40301 3.85875 4.14539 4.36695 4.39138 4.41699 4.58348 4.69893 4.86673 4.91706 5.01898 5.10008 5.15701 5.17398 5.29992 5.33460 5.42163 5.43854 5.52174 5.65896 5.70863 5.79522 5.80846 5.89208 5.91921 6.04332 6.20258 6.28688 6.45184 6.49438 6.54468 6.71944 6.78056 7.25094 7.60616 7.66176 7.71207 8.13782 8.21189 8.28697 9.10988 9.73799 10.22500 11.20981 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.029812 B = 0.002649 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.998876 B =10567.341752 C =10992.381010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.585 5.585 3 C -0.263 4.263 4 H 0.070 0.930 5 C 0.007 3.993 6 N -0.902 5.902 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.152 4.152 14 C 0.096 3.904 15 N -0.610 5.610 16 C 0.530 3.470 17 O -0.539 6.539 18 C -0.097 4.097 19 H 0.104 0.896 20 C -0.100 4.100 21 C -0.034 4.034 22 C -0.015 4.015 23 N -0.258 5.258 24 N -0.091 5.091 25 N -0.382 5.382 26 H 0.449 0.551 27 C -0.009 4.009 28 C -0.043 4.043 29 C 0.086 3.914 30 H 0.034 0.966 31 H 0.040 0.960 32 H 0.004 0.996 33 H 0.254 0.746 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.230 -18.339 -0.115 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.305 5.305 3 C -0.393 4.393 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.546 5.546 7 Si 0.735 3.265 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.192 4.192 14 C -0.027 4.027 15 N -0.343 5.343 16 C 0.317 3.683 17 O -0.417 6.417 18 C -0.119 4.119 19 H 0.122 0.878 20 C -0.139 4.139 21 C -0.073 4.073 22 C -0.155 4.155 23 N -0.124 5.124 24 N -0.070 5.070 25 N -0.101 5.101 26 H 0.294 0.706 27 C -0.144 4.144 28 C -0.083 4.083 29 C -0.038 4.038 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.022 0.978 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.134 -19.634 -0.168 20.065 hybrid contribution 0.742 2.249 -0.011 2.368 sum 4.876 -17.385 -0.179 18.057 Atomic orbital electron populations 1.20805 0.82531 0.95718 0.99659 1.43856 1.01814 0.99892 1.84968 1.19196 0.98905 0.85315 1.35861 0.91245 1.25019 0.98059 0.98617 0.97571 1.70066 1.21102 1.27514 1.35902 0.86246 0.78694 0.83962 0.77555 1.21382 1.21736 1.20420 1.21299 0.96331 0.86021 0.90091 0.90357 1.23411 1.03035 0.92376 1.00425 1.22484 0.99127 0.99679 0.81452 1.48540 1.65733 1.07791 1.12265 1.19988 0.77317 0.84865 0.86127 1.90710 1.48574 1.85875 1.16503 1.21295 0.97229 0.92975 1.00407 0.87809 1.21487 1.03739 0.91869 0.96767 1.20029 0.92821 0.97617 0.96866 1.21794 1.00198 0.89400 1.04083 1.74831 1.05569 1.23216 1.08809 1.78577 1.10050 0.97925 1.20400 1.44698 1.21522 1.08286 1.35582 0.70575 1.21808 0.93809 0.98009 1.00822 1.20272 0.97885 0.87666 1.02460 1.22772 1.02470 0.79645 0.98962 0.94770 0.94129 0.97786 0.93607 0.90344 0.90520 0.91598 0.91268 0.89163 0.90674 0.89567 0.89193 0.88851 0.88718 0.90789 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.65 7.70 59.85 0.46 4.11 16 2 N -0.58 -13.53 2.93 -171.39 -0.50 -14.03 16 3 C -0.26 -6.80 9.59 -15.06 -0.14 -6.95 16 4 H 0.07 1.75 7.86 -52.48 -0.41 1.34 16 5 C 0.01 0.17 5.05 -17.43 -0.09 0.09 16 6 N -0.90 -25.14 10.87 55.49 0.60 -24.54 16 7 Si 0.91 20.99 29.58 -169.99 -5.03 15.96 16 8 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 C 0.17 3.12 3.44 -66.10 -0.23 2.90 16 12 H 0.08 1.39 7.93 -51.93 -0.41 0.98 16 13 C -0.15 -2.27 6.65 -24.58 -0.16 -2.43 16 14 C 0.10 1.05 5.14 -2.51 -0.01 1.03 16 15 N -0.61 -8.26 3.32 -170.49 -0.57 -8.83 16 16 C 0.53 7.05 7.19 -10.98 -0.08 6.97 16 17 O -0.54 -9.25 16.14 5.56 0.09 -9.16 16 18 C -0.10 -0.89 1.85 -91.49 -0.17 -1.06 16 19 H 0.10 0.86 7.82 -51.93 -0.41 0.45 16 20 C -0.10 -0.90 4.64 -26.45 -0.12 -1.02 16 21 C -0.03 -0.28 6.30 -27.71 -0.17 -0.46 16 22 C -0.01 -0.15 7.11 -83.13 -0.59 -0.74 16 23 N -0.26 -3.23 12.40 33.16 0.41 -2.82 16 24 N -0.09 -1.02 13.40 60.35 0.81 -0.22 16 25 N -0.38 -2.99 6.97 33.39 0.23 -2.76 16 26 H 0.45 1.74 8.96 -190.08 -1.70 0.04 16 27 C -0.01 -0.08 7.15 -82.50 -0.59 -0.67 16 28 C -0.04 -0.32 5.21 -27.75 -0.14 -0.46 16 29 C 0.09 1.43 6.40 -3.06 -0.02 1.42 16 30 H 0.03 0.86 7.32 -51.93 -0.38 0.48 16 31 H 0.04 1.03 7.44 -51.93 -0.39 0.64 16 32 H 0.00 0.08 6.28 -51.93 -0.33 -0.25 16 33 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.28 7.28 -51.93 -0.38 0.91 16 36 H 0.07 0.58 7.30 -51.93 -0.38 0.20 16 37 H 0.07 0.62 7.26 -51.93 -0.38 0.24 16 38 H 0.09 0.86 7.76 -51.93 -0.40 0.46 16 39 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.68 8.12 -51.93 -0.42 0.26 16 43 H 0.09 0.55 5.44 -51.93 -0.28 0.27 16 44 H 0.07 1.41 6.13 -51.93 -0.32 1.10 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 352.23 15.07 5.31 5.31 Total: -1.00 -32.70 352.23 -8.54 -41.24 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -7.83 Total: -2.88 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -2.07 Total: 2.72 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.99 Total: -53.19 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.70 -8.54 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972716607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.741 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds