Wall clock time and date at job start Tue Mar 31 2020 04:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36940 * 120.00137 * 2 1 4 4 H 1.08004 * 120.00211 * 203.50944 * 3 2 1 5 5 C 1.38808 * 119.99891 * 23.50053 * 3 2 1 6 6 N 1.31615 * 120.00332 * 15.21432 * 5 3 2 7 7 Si 1.86802 * 120.00113 * 195.21075 * 5 3 2 8 8 H 1.48495 * 109.47091 * 90.00413 * 7 5 3 9 9 H 1.48500 * 109.47343 * 210.00413 * 7 5 3 10 10 H 1.48501 * 109.47132 * 330.00650 * 7 5 3 11 11 C 1.46499 * 119.99971 * 179.97438 * 2 1 3 12 12 H 1.09007 * 110.64170 * 178.31101 * 11 2 1 13 13 C 1.55157 * 110.72028 * 301.45465 * 11 2 1 14 14 C 1.54912 * 101.61477 * 154.02304 * 13 11 2 15 15 N 1.47463 * 104.81159 * 323.04216 * 14 13 11 16 16 C 1.34779 * 125.63059 * 204.05039 * 15 14 13 17 17 O 1.21275 * 120.00199 * 180.02562 * 16 15 14 18 18 C 1.50706 * 119.99599 * 0.02562 * 16 15 14 19 19 H 1.09000 * 109.45430 * 60.00382 * 18 16 15 20 20 C 1.53114 * 109.45397 * 179.97438 * 18 16 15 21 21 C 1.53422 * 109.57378 * 190.09173 * 20 18 16 22 22 C 1.50597 * 108.33583 * 310.18277 * 21 20 18 23 23 N 1.32904 * 129.15958 * 196.48571 * 22 21 20 24 24 N 1.29021 * 108.63438 * 179.90740 * 23 22 21 25 25 N 1.29106 * 110.26156 * 0.02562 * 24 23 22 26 26 H 0.96998 * 126.01302 * 180.02562 * 25 24 23 27 27 C 1.34406 * 107.98270 * 0.05672 * 25 24 23 28 28 C 1.50527 * 129.26015 * 179.76591 * 27 25 24 29 29 C 1.47022 * 108.72475 * 24.07483 * 15 14 13 30 30 H 1.08995 * 109.47118 * 275.22271 * 1 2 3 31 31 H 1.09000 * 109.46946 * 35.21686 * 1 2 3 32 32 H 1.08998 * 109.46807 * 155.21590 * 1 2 3 33 33 H 0.97003 * 120.00686 * 179.97438 * 6 5 3 34 34 H 1.08997 * 111.00241 * 272.11458 * 13 11 2 35 35 H 1.08996 * 111.00639 * 35.92888 * 13 11 2 36 36 H 1.08996 * 110.36609 * 81.84739 * 14 13 11 37 37 H 1.08996 * 110.36490 * 204.16814 * 14 13 11 38 38 H 1.09001 * 109.45279 * 310.12404 * 20 18 16 39 39 H 1.09000 * 109.45294 * 70.05931 * 20 18 16 40 40 H 1.08994 * 109.69149 * 69.89993 * 21 20 18 41 41 H 1.09002 * 109.68445 * 190.43666 * 21 20 18 42 42 H 1.08997 * 109.70455 * 76.86450 * 28 27 25 43 43 H 1.09005 * 109.67788 * 316.28411 * 28 27 25 44 44 H 1.08999 * 109.88198 * 239.55792 * 29 15 14 45 45 H 1.08994 * 109.89070 * 118.39066 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1625 1.2248 -0.3731 5 6 1.5420 2.3382 0.4794 6 7 0.4442 2.2521 1.2002 7 14 2.2824 4.0111 0.1014 8 1 1.7071 4.5325 -1.1643 9 1 1.9741 4.9506 1.2093 10 1 3.7547 3.8800 -0.0411 11 6 2.1975 -1.2687 0.0006 12 1 3.2727 -1.0917 -0.0296 13 6 1.8161 -2.1222 1.2389 14 6 2.1045 -3.5566 0.7299 15 7 1.6993 -3.5421 -0.6879 16 6 1.3362 -4.6194 -1.4118 17 8 1.0210 -4.4897 -2.5757 18 6 1.3220 -5.9852 -0.7749 19 1 0.6281 -5.9865 0.0657 20 6 0.8754 -7.0244 -1.8068 21 6 0.6167 -8.3652 -1.1073 22 6 1.8085 -8.6872 -0.2448 23 7 2.1621 -9.8472 0.2989 24 7 3.2557 -9.6756 0.9616 25 7 3.6404 -8.4460 0.8787 26 1 4.4331 -8.0675 1.2901 27 6 2.7490 -7.7824 0.1228 28 6 2.7307 -6.3307 -0.2750 29 6 1.7574 -2.1583 -1.1812 30 1 -0.3633 0.0935 1.0233 31 1 -0.3633 0.8396 -0.5926 32 1 -0.3633 -0.9330 -0.4308 33 1 0.0197 3.0573 1.5355 34 1 2.4478 -1.8762 2.0924 35 1 0.7620 -2.0005 1.4877 36 1 3.1668 -3.7840 0.8181 37 1 1.5127 -4.2829 1.2869 38 1 -0.0403 -6.6850 -2.2910 39 1 1.6566 -7.1508 -2.5563 40 1 -0.2761 -8.2894 -0.4867 41 1 0.4801 -9.1482 -1.8532 42 1 3.4553 -6.1586 -1.0708 43 1 2.9770 -5.7108 0.5871 44 1 0.7731 -1.8482 -1.5320 45 1 2.4824 -2.0836 -1.9915 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972716607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:37 Heat of formation + Delta-G solvation = 60.053717 kcal Electronic energy + Delta-G solvation = -27223.175834 eV Core-core repulsion = 23470.301168 eV Total energy + Delta-G solvation = -3752.874666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.46283 -41.34435 -39.14552 -37.50513 -36.54260 -34.91099 -33.48030 -31.76228 -31.28355 -31.01666 -29.21157 -28.05517 -26.18226 -25.06924 -24.02267 -23.95415 -23.38000 -21.18871 -20.75424 -20.02416 -18.98625 -18.91898 -18.16596 -17.44142 -17.26526 -16.67848 -16.48280 -15.79930 -15.33389 -15.14788 -15.04792 -14.91138 -14.78963 -14.46931 -14.26646 -14.04619 -13.79435 -13.32033 -13.02001 -12.99462 -12.92286 -12.85120 -12.59923 -12.53471 -12.34613 -12.24723 -12.17162 -12.06968 -12.01976 -11.81625 -11.55409 -11.44179 -11.29758 -10.83679 -10.62930 -9.89634 -9.60272 -8.79166 -7.83502 -5.32185 0.53860 1.46014 1.47734 1.50477 1.54564 1.57677 1.84555 1.99646 2.52020 3.16390 3.29439 3.40407 3.59186 3.65270 3.72463 3.86181 3.90263 3.96574 4.11714 4.23662 4.31697 4.35906 4.38862 4.46364 4.51540 4.58019 4.67955 4.75694 4.82877 4.85727 4.96115 5.00471 5.04239 5.13874 5.18063 5.23070 5.28681 5.35148 5.39283 5.43826 5.66150 5.69056 5.99808 6.32390 6.59910 7.12792 7.16724 7.40763 7.85086 8.29698 9.19577 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.029812 B = 0.002649 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.998876 B =10567.341752 C =10992.381010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.602 5.602 3 C -0.265 4.265 4 H 0.075 0.925 5 C -0.049 4.049 6 N -0.934 5.934 7 Si 0.965 3.035 8 H -0.291 1.291 9 H -0.296 1.296 10 H -0.265 1.265 11 C 0.165 3.835 12 H 0.084 0.916 13 C -0.145 4.145 14 C 0.103 3.897 15 N -0.609 5.609 16 C 0.530 3.470 17 O -0.583 6.583 18 C -0.088 4.088 19 H 0.123 0.877 20 C -0.095 4.095 21 C -0.028 4.028 22 C -0.031 4.031 23 N -0.293 5.293 24 N -0.115 5.115 25 N -0.362 5.362 26 H 0.466 0.534 27 C 0.004 3.996 28 C -0.036 4.036 29 C 0.098 3.902 30 H 0.011 0.989 31 H 0.008 0.992 32 H 0.025 0.975 33 H 0.248 0.752 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.121 0.879 44 H 0.045 0.955 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.899 -19.655 0.656 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.324 5.324 3 C -0.395 4.395 4 H 0.092 0.908 5 C -0.244 4.244 6 N -0.580 5.580 7 Si 0.794 3.206 8 H -0.219 1.219 9 H -0.223 1.223 10 H -0.190 1.190 11 C 0.056 3.944 12 H 0.102 0.898 13 C -0.185 4.185 14 C -0.019 4.019 15 N -0.342 5.342 16 C 0.320 3.680 17 O -0.463 6.463 18 C -0.109 4.109 19 H 0.141 0.859 20 C -0.134 4.134 21 C -0.067 4.067 22 C -0.171 4.171 23 N -0.159 5.159 24 N -0.094 5.094 25 N -0.084 5.084 26 H 0.315 0.685 27 C -0.133 4.133 28 C -0.075 4.075 29 C -0.027 4.027 30 H 0.029 0.971 31 H 0.027 0.973 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.139 0.861 44 H 0.063 0.937 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.862 -21.006 0.632 21.818 hybrid contribution 0.248 2.624 -0.315 2.654 sum 6.110 -18.382 0.316 19.374 Atomic orbital electron populations 1.20446 0.83179 0.95348 0.97701 1.44020 1.01766 1.01215 1.85356 1.19540 0.99024 0.86540 1.34412 0.90762 1.25727 0.98822 1.01709 0.98170 1.70211 1.22575 1.27703 1.37501 0.85302 0.78604 0.80113 0.76626 1.21865 1.22310 1.18993 1.21503 0.96068 0.84610 0.92193 0.89825 1.23238 1.01827 0.94416 0.99052 1.22677 1.02005 0.97595 0.79583 1.48576 1.65827 1.06418 1.13398 1.20678 0.75872 0.85894 0.85565 1.90700 1.50322 1.86600 1.18671 1.21270 0.99097 0.89960 1.00602 0.85910 1.21413 1.03112 0.92190 0.96652 1.20013 0.92719 0.97105 0.96855 1.22142 1.01234 0.89310 1.04462 1.74797 1.06442 1.24633 1.09984 1.78515 1.10284 0.99351 1.21259 1.44695 1.21718 1.07362 1.34631 0.68486 1.21870 0.93198 0.98170 1.00039 1.20287 0.96561 0.87069 1.03596 1.22349 1.00538 0.81628 0.98219 0.97076 0.97320 0.95637 0.94296 0.89517 0.92648 0.87882 0.87920 0.90050 0.91406 0.88456 0.88847 0.88243 0.86113 0.93711 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.49 7.70 127.77 0.98 9.48 16 2 N -0.60 -27.97 2.93 -696.15 -2.04 -30.02 16 3 C -0.27 -13.70 9.59 84.03 0.81 -12.90 16 4 H 0.07 3.69 7.86 -2.91 -0.02 3.66 16 5 C -0.05 -2.61 5.05 84.86 0.43 -2.18 16 6 N -0.93 -53.35 10.87 21.65 0.24 -53.11 16 7 Si 0.96 43.50 29.58 68.60 2.03 45.53 16 8 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 9 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 11 C 0.16 5.72 3.44 46.18 0.16 5.88 16 12 H 0.08 2.81 7.93 -2.38 -0.02 2.79 16 13 C -0.15 -3.96 6.65 31.99 0.21 -3.75 16 14 C 0.10 1.77 5.14 86.85 0.45 2.22 16 15 N -0.61 -14.77 3.32 -811.70 -2.70 -17.47 16 16 C 0.53 12.82 7.19 87.66 0.63 13.45 16 17 O -0.58 -19.47 16.14 -3.01 -0.05 -19.52 16 18 C -0.09 -1.31 1.85 -11.36 -0.02 -1.33 16 19 H 0.12 1.46 7.82 -2.39 -0.02 1.44 16 20 C -0.10 -1.51 4.64 30.77 0.14 -1.37 16 21 C -0.03 -0.40 6.30 29.96 0.19 -0.21 16 22 C -0.03 -0.56 7.11 41.75 0.30 -0.26 16 23 N -0.29 -6.89 12.40 -48.99 -0.61 -7.49 16 24 N -0.12 -2.39 13.40 37.02 0.50 -1.90 16 25 N -0.36 -4.54 6.97 -48.27 -0.34 -4.88 16 26 H 0.47 1.91 8.96 -219.68 -1.97 -0.06 16 27 C 0.00 0.06 7.15 41.50 0.30 0.35 16 28 C -0.04 -0.36 5.21 29.94 0.16 -0.21 16 29 C 0.10 3.18 6.40 86.73 0.55 3.73 16 30 H 0.01 0.57 7.32 -2.39 -0.02 0.55 16 31 H 0.01 0.43 7.44 -2.39 -0.02 0.41 16 32 H 0.03 1.07 6.28 -2.39 -0.01 1.06 16 33 H 0.25 13.86 8.31 -92.71 -0.77 13.08 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.05 1.77 7.28 -2.39 -0.02 1.75 16 36 H 0.10 1.13 7.30 -2.39 -0.02 1.11 16 37 H 0.10 1.20 7.26 -2.39 -0.02 1.18 16 38 H 0.08 1.46 7.76 -2.39 -0.02 1.44 16 39 H 0.07 1.18 8.12 -2.39 -0.02 1.16 16 40 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.10 1.01 8.12 -2.39 -0.02 0.99 16 43 H 0.12 0.64 5.44 -2.38 -0.01 0.63 16 44 H 0.04 1.72 6.13 -2.39 -0.01 1.70 16 45 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -73.77 352.23 1.37 -72.40 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -0.94 Total: 3.55 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 5.28 Total: 12.90 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -4.95 Total: -114.86 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.52 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -73.77 1.37 -72.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972716607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.454 kcal (2) G-P(sol) polarization free energy of solvation -73.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds