Wall clock time and date at job start Tue Mar 31 2020 04:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35311 * 125.86806 * 2 1 4 4 C 1.35350 * 106.17585 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.75283 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47256 * 125.00257 * 5 4 3 7 7 C 1.50695 * 109.46651 * 180.02562 * 6 5 4 8 8 O 1.21275 * 120.00878 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99445 * 180.02562 * 7 6 5 10 10 C 1.47163 * 120.70687 * 180.02562 * 9 7 6 11 11 C 1.53883 * 108.07291 * 132.71201 * 10 9 7 12 12 H 1.08998 * 112.09862 * 181.93224 * 11 10 9 13 13 C 1.54552 * 107.82767 * 306.52188 * 11 10 9 14 14 C 1.54405 * 104.84326 * 89.01335 * 13 11 10 15 15 C 1.54543 * 104.85405 * 0.02562 * 14 13 11 16 16 H 1.09003 * 112.68174 * 146.68090 * 15 14 13 17 17 C 1.47157 * 120.70987 * 359.97346 * 9 7 6 18 18 N 1.48308 * 104.35933 * 24.69658 * 15 14 13 19 19 C 1.36938 * 128.08161 * 139.08869 * 18 15 14 20 20 H 1.07996 * 120.00243 * 195.17012 * 19 18 15 21 21 C 1.38815 * 119.99653 * 15.17137 * 19 18 15 22 22 N 1.31620 * 120.00163 * 9.31466 * 21 19 18 23 23 Si 1.86800 * 119.99844 * 189.32239 * 21 19 18 24 24 H 1.48501 * 109.47074 * 59.99735 * 23 21 19 25 25 H 1.48501 * 109.47156 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47038 * 299.99753 * 23 21 19 27 27 N 1.33775 * 106.49508 * 0.26924 * 4 3 2 28 28 N 1.28634 * 108.88404 * 359.55814 * 27 4 3 29 29 H 1.09005 * 109.47267 * 89.99100 * 1 2 3 30 30 H 1.08996 * 109.47208 * 209.99202 * 1 2 3 31 31 H 1.09002 * 109.47322 * 329.99464 * 1 2 3 32 32 H 1.08004 * 126.91294 * 359.95914 * 3 2 1 33 33 H 1.09004 * 109.47207 * 5.00038 * 5 4 3 34 34 H 1.09002 * 109.46922 * 245.00721 * 5 4 3 35 35 H 1.08993 * 109.46787 * 59.99886 * 6 5 4 36 36 H 1.08998 * 109.46644 * 300.00069 * 6 5 4 37 37 H 1.09003 * 109.74562 * 252.36202 * 10 9 7 38 38 H 1.08994 * 109.75252 * 13.05106 * 10 9 7 39 39 H 1.08998 * 110.36663 * 207.91212 * 13 11 10 40 40 H 1.09002 * 110.36403 * 330.12240 * 13 11 10 41 41 H 1.08994 * 110.36672 * 241.16387 * 14 13 11 42 42 H 1.08999 * 110.35493 * 118.85081 * 14 13 11 43 43 H 1.09003 * 109.75319 * 346.90486 * 17 9 7 44 44 H 1.09000 * 109.74842 * 107.63166 * 17 9 7 45 45 H 0.97001 * 119.99917 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6404 0.0006 5 6 4.7880 1.4734 0.0014 6 6 5.6698 1.0656 1.1834 7 6 6.9253 1.8990 1.1844 8 8 7.0977 2.7370 0.3248 9 7 7.8567 1.7131 2.1407 10 6 9.0882 2.5186 2.1570 11 6 9.3047 3.0309 3.5918 12 1 10.1863 3.6668 3.6716 13 6 8.0104 3.7479 4.0385 14 6 7.1412 2.6386 4.6693 15 6 7.9896 1.3527 4.5469 16 1 7.8354 0.6665 5.3796 17 6 7.6634 0.7012 3.1915 18 7 9.3883 1.8405 4.4745 19 6 10.4985 1.3151 5.0802 20 1 11.4050 1.8984 5.1456 21 6 10.4585 0.0327 5.6101 22 7 9.4239 -0.7455 5.3728 23 14 11.8731 -0.5885 6.6600 24 1 12.0280 0.2867 7.8497 25 1 11.5891 -1.9776 7.1016 26 1 13.1266 -0.5681 5.8640 27 7 3.4575 -0.6952 -0.0051 28 7 2.2191 -1.0431 0.0004 29 1 -0.3634 0.0002 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.9381 2.1281 -0.0006 33 1 4.5249 2.5274 0.0910 34 1 5.3313 1.3125 -0.9298 35 1 5.9329 0.0117 1.0937 36 1 5.1265 1.2265 2.1144 37 1 9.9351 1.9028 1.8542 38 1 8.9849 3.3633 1.4760 39 1 8.2384 4.5177 4.7758 40 1 7.5032 4.1855 3.1787 41 1 6.2065 2.5303 4.1193 42 1 6.9419 2.8629 5.7172 43 1 6.6286 0.3586 3.1871 44 1 8.3319 -0.1421 3.0181 45 1 9.3962 -1.6418 5.7428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029610421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:33 Heat of formation + Delta-G solvation = 99.833435 kcal Electronic energy + Delta-G solvation = -27456.192930 eV Core-core repulsion = 23705.043242 eV Total energy + Delta-G solvation = -3751.149688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.36095 -39.97196 -37.86023 -35.25593 -33.64083 -33.48131 -32.40061 -30.82594 -29.97243 -29.22478 -28.14219 -26.42795 -24.85682 -23.65338 -23.34415 -22.22052 -21.06270 -19.72804 -19.45277 -18.40356 -17.47521 -16.95195 -16.73001 -15.96046 -15.63060 -15.18672 -14.95307 -14.55988 -14.49058 -13.87197 -13.72810 -13.68443 -13.17395 -13.03863 -12.91376 -12.65829 -12.48424 -12.09747 -11.73374 -11.69208 -11.59343 -11.52278 -11.23863 -11.01180 -10.86406 -10.75413 -10.68705 -10.34791 -10.18673 -10.05933 -9.83023 -9.59293 -9.53605 -9.35171 -9.15762 -8.73578 -7.99013 -6.82280 -5.84012 -3.18399 1.43605 2.16957 2.44211 3.19630 3.37346 3.42740 3.42973 3.68618 4.11800 4.35567 4.43018 4.57720 4.71235 4.86537 4.90125 5.14682 5.21821 5.30352 5.32945 5.34753 5.59615 5.69569 5.74536 5.77530 5.81555 5.97015 6.01139 6.10142 6.15474 6.17886 6.26933 6.33713 6.37954 6.44066 6.55740 6.64399 6.69233 6.77294 6.90886 7.03706 7.29486 7.49239 7.67381 8.13263 8.18057 8.40309 8.76813 9.06515 9.68483 10.45571 11.29251 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018558 B = 0.003134 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.430157 B = 8931.686755 C = 9680.503318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.298 5.298 3 C -0.052 4.052 4 C -0.012 4.012 5 C -0.015 4.015 6 C -0.131 4.131 7 C 0.509 3.491 8 O -0.569 6.569 9 N -0.590 5.590 10 C 0.102 3.898 11 C 0.133 3.867 12 H 0.077 0.923 13 C -0.123 4.123 14 C -0.134 4.134 15 C 0.167 3.833 16 H 0.120 0.880 17 C 0.102 3.898 18 N -0.584 5.584 19 C -0.225 4.225 20 H 0.076 0.924 21 C -0.003 4.003 22 N -0.915 5.915 23 Si 0.912 3.088 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 N -0.261 5.261 28 N -0.089 5.089 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.190 0.810 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.381 5.275 -7.901 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.092 5.092 3 C -0.202 4.202 4 C -0.150 4.150 5 C -0.054 4.054 6 C -0.171 4.171 7 C 0.297 3.703 8 O -0.451 6.451 9 N -0.322 5.322 10 C -0.022 4.022 11 C 0.025 3.975 12 H 0.095 0.905 13 C -0.162 4.162 14 C -0.174 4.174 15 C 0.059 3.941 16 H 0.137 0.863 17 C -0.022 4.022 18 N -0.306 5.306 19 C -0.353 4.353 20 H 0.094 0.906 21 C -0.200 4.200 22 N -0.561 5.561 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 N -0.128 5.128 28 N -0.068 5.068 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.207 0.793 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.160 3.908 -8.186 19.410 hybrid contribution 0.391 0.645 0.563 0.942 sum -16.769 4.553 -7.623 18.975 Atomic orbital electron populations 1.22234 0.72939 1.05881 1.04829 1.47229 1.09302 1.05053 1.47639 1.23403 0.90891 0.94663 1.11262 1.22135 0.95451 0.91459 1.05934 1.19616 0.89236 0.97125 0.99449 1.21557 0.94331 1.01543 0.99682 1.20491 0.84854 0.83764 0.81192 1.90609 1.79526 1.36718 1.38209 1.48218 1.19144 1.37472 1.27329 1.22325 0.85848 0.94946 0.99123 1.22008 0.95926 0.90453 0.89147 0.90479 1.22477 0.97046 0.97494 0.99168 1.22640 0.97680 0.97854 0.99180 1.21891 0.83575 0.92919 0.95723 0.86264 1.22631 1.00033 0.90888 0.88607 1.45184 1.03464 1.28961 1.52949 1.18968 0.90506 0.96262 1.29590 0.90640 1.24817 0.98144 0.95518 1.01545 1.69801 1.30240 1.08310 1.47778 0.86201 0.81518 0.77705 0.80306 1.21233 1.21609 1.21130 1.75091 1.09181 1.12171 1.16348 1.78323 0.96559 1.12121 1.19807 0.89222 0.88088 0.88360 0.79260 0.89516 0.89420 0.88344 0.89265 0.92125 0.90777 0.92824 0.92680 0.93240 0.92828 0.92033 0.89889 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.32 11.39 59.85 0.68 1.00 16 2 N -0.30 -2.86 3.74 -68.06 -0.25 -3.11 16 3 C -0.05 -0.49 11.54 -17.05 -0.20 -0.69 16 4 C -0.01 -0.15 6.50 -82.77 -0.54 -0.69 16 5 C -0.01 -0.19 5.08 -27.88 -0.14 -0.33 16 6 C -0.13 -1.92 4.06 -27.88 -0.11 -2.04 16 7 C 0.51 9.13 7.70 -10.98 -0.08 9.04 16 8 O -0.57 -11.38 15.45 5.56 0.09 -11.30 16 9 N -0.59 -11.31 2.25 -171.54 -0.39 -11.69 16 10 C 0.10 2.01 5.90 -3.22 -0.02 1.99 16 11 C 0.13 2.67 4.32 -65.59 -0.28 2.39 16 12 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 13 C -0.12 -2.21 6.19 -25.18 -0.16 -2.37 16 14 C -0.13 -2.49 6.19 -25.18 -0.16 -2.65 16 15 C 0.17 3.63 3.14 -65.66 -0.21 3.42 16 16 H 0.12 2.94 6.34 -51.93 -0.33 2.62 16 17 C 0.10 2.06 5.70 -3.22 -0.02 2.04 16 18 N -0.58 -13.81 2.81 -152.50 -0.43 -14.24 16 19 C -0.23 -5.88 10.37 -15.06 -0.16 -6.04 16 20 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 21 C 0.00 -0.09 5.42 -17.43 -0.09 -0.18 16 22 N -0.92 -24.69 10.40 55.49 0.58 -24.11 16 23 Si 0.91 21.21 29.56 -169.99 -5.03 16.19 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 N -0.26 -3.98 12.40 33.29 0.41 -3.57 16 28 N -0.09 -1.21 13.16 60.35 0.79 -0.42 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.19 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.09 1.21 8.10 -51.93 -0.42 0.78 16 35 H 0.10 1.52 8.06 -51.93 -0.42 1.10 16 36 H 0.09 1.23 7.59 -51.93 -0.39 0.84 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.07 1.41 7.11 -51.93 -0.37 1.04 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.96 7.84 -51.93 -0.41 0.55 16 41 H 0.05 0.84 7.84 -51.93 -0.41 0.43 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 1.10 6.09 -51.93 -0.32 0.78 16 44 H 0.08 1.95 7.82 -51.93 -0.41 1.55 16 45 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -32.45 360.67 -7.09 -39.54 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.82 Total: 2.36 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -1.48 Total: 4.92 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.71 Total: -57.14 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.45 -7.09 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029610421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.373 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds