Wall clock time and date at job start Tue Mar 31 2020 04:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.29106 * 126.00753 * 2 1 4 4 N 1.29021 * 110.25573 * 180.02562 * 3 2 1 5 5 C 1.32912 * 108.63765 * 0.02562 * 4 3 2 6 6 C 1.34399 * 126.00466 * 179.97438 * 2 1 3 7 7 C 1.50539 * 129.25695 * 359.85028 * 6 2 1 8 8 C 1.53434 * 108.32524 * 196.44430 * 7 6 2 9 9 H 1.09003 * 109.45704 * 70.28957 * 8 7 6 10 10 C 1.50695 * 109.45799 * 190.25688 * 8 7 6 11 11 O 1.21283 * 119.99958 * 0.02562 * 10 8 7 12 12 N 1.34776 * 120.00109 * 180.02562 * 10 8 7 13 13 C 1.46496 * 120.00397 * 180.27992 * 12 10 8 14 14 C 1.52991 * 109.47621 * 179.72511 * 13 12 10 15 15 C 1.53947 * 113.74073 * 271.67151 * 14 13 12 16 16 N 1.47584 * 86.12035 * 222.04481 * 15 14 13 17 17 C 1.36935 * 134.49565 * 204.64218 * 16 15 14 18 18 H 1.07993 * 120.00025 * 173.48231 * 17 16 15 19 19 C 1.38807 * 119.99816 * 353.47881 * 17 16 15 20 20 N 1.31618 * 120.00300 * 5.06708 * 19 17 16 21 21 Si 1.86804 * 119.99933 * 185.06631 * 19 17 16 22 22 H 1.48509 * 109.46813 * 94.98882 * 21 19 17 23 23 H 1.48502 * 109.46936 * 214.98490 * 21 19 17 24 24 H 1.48496 * 109.47044 * 334.98964 * 21 19 17 25 25 C 1.47585 * 91.01189 * 24.63798 * 16 15 14 26 26 C 1.53112 * 109.55252 * 310.28494 * 8 7 6 27 27 C 1.50594 * 129.15696 * 179.78461 * 5 4 3 28 28 H 1.08993 * 109.47120 * 269.99930 * 1 2 3 29 29 H 1.08999 * 109.46957 * 30.00836 * 1 2 3 30 30 H 1.09002 * 109.46744 * 150.00170 * 1 2 3 31 31 H 1.08996 * 109.69544 * 76.73306 * 7 6 2 32 32 H 1.08997 * 109.68865 * 316.15095 * 7 6 2 33 33 H 0.97008 * 120.00161 * 359.97438 * 12 10 8 34 34 H 1.09007 * 109.46643 * 299.72466 * 13 12 10 35 35 H 1.08996 * 109.47550 * 59.71620 * 13 12 10 36 36 H 1.08996 * 112.94472 * 43.39955 * 14 13 12 37 37 H 1.09006 * 113.76854 * 336.34893 * 15 14 13 38 38 H 1.09001 * 113.77179 * 107.74137 * 15 14 13 39 39 H 0.96998 * 120.00272 * 180.02562 * 20 19 17 40 40 H 1.09000 * 113.77090 * 221.06035 * 25 16 15 41 41 H 1.09003 * 113.86658 * 89.67406 * 25 16 15 42 42 H 1.09002 * 109.44897 * 190.09694 * 26 8 7 43 43 H 1.08998 * 109.45213 * 310.02687 * 26 8 7 44 44 H 1.08998 * 109.69687 * 316.33000 * 27 5 4 45 45 H 1.08997 * 109.69470 * 76.87524 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6941 -0.0005 5 6 3.5327 -0.6333 -0.0015 6 6 2.2551 -1.0872 0.0005 7 6 1.8721 -2.5431 0.0042 8 6 3.1013 -3.3642 0.4155 9 1 3.3141 -3.1953 1.4712 10 6 2.8265 -4.8281 0.1868 11 8 1.7560 -5.1815 -0.2606 12 7 3.7702 -5.7447 0.4795 13 6 3.5054 -7.1674 0.2514 14 6 4.7326 -7.9861 0.6569 15 6 5.7583 -8.1682 -0.4765 16 7 5.8713 -9.5652 -0.0142 17 6 6.8419 -10.5276 -0.0961 18 1 6.7185 -11.4648 0.4262 19 6 7.9844 -10.2987 -0.8504 20 7 8.1820 -9.1215 -1.4050 21 14 9.2417 -11.6614 -1.0784 22 1 8.9723 -12.3753 -2.3525 23 1 10.6054 -11.0749 -1.1184 24 1 9.1467 -12.6171 0.0542 25 6 4.5181 -9.5082 0.5720 26 6 4.3084 -2.9347 -0.4228 27 6 4.7468 -1.5242 -0.0068 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 1.5488 -2.8404 -0.9934 32 1 1.0645 -2.7085 0.7172 33 1 4.6266 -5.4621 0.8370 34 1 2.6480 -7.4776 0.8488 35 1 3.2912 -7.3324 -0.8045 36 1 5.1709 -7.6566 1.5989 37 1 5.3321 -8.0689 -1.4749 38 1 6.6698 -7.5858 -0.3420 39 1 8.9802 -8.9617 -1.9325 40 1 4.4393 -9.9956 1.5437 41 1 3.7263 -9.8025 -0.1169 42 1 5.1298 -3.6327 -0.2605 43 1 4.0358 -2.9345 -1.4781 44 1 5.4793 -1.1427 -0.7181 45 1 5.1848 -1.5542 0.9909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031926310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:15 Heat of formation + Delta-G solvation = 106.370292 kcal Electronic energy + Delta-G solvation = -26317.469363 eV Core-core repulsion = 22566.603134 eV Total energy + Delta-G solvation = -3750.866229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.65169 -40.09562 -38.15623 -36.80004 -35.18198 -34.51431 -32.24255 -30.87771 -30.79918 -28.80404 -28.14742 -26.17321 -24.85600 -24.45761 -23.49213 -21.96839 -21.67518 -20.74103 -19.85317 -18.94534 -17.62721 -17.18482 -16.80566 -16.59201 -16.08341 -15.45280 -15.03679 -14.84790 -14.38886 -14.14440 -14.12567 -14.03220 -13.72193 -13.61789 -13.29628 -13.19360 -12.92361 -12.44268 -12.34406 -12.28485 -11.79088 -11.47950 -11.43168 -11.37659 -11.26611 -11.02567 -10.80271 -10.76415 -10.59542 -10.22289 -10.04709 -9.82220 -9.70572 -9.46151 -9.08865 -8.89864 -8.82182 -6.90561 -5.82195 -3.13366 1.29535 2.03173 2.30996 2.59834 3.16277 3.36906 3.42302 3.44119 3.87803 4.13541 4.29347 4.42507 4.47219 4.48250 4.54506 4.61448 4.83616 4.87997 4.96658 5.12694 5.15903 5.17372 5.24684 5.30439 5.32443 5.54459 5.58433 5.61979 5.73511 5.76967 5.78539 5.89052 5.99584 6.02106 6.19314 6.28457 6.31191 6.49542 6.59870 6.69987 7.17216 7.29484 7.51796 7.55684 7.94271 8.22166 8.26880 9.01135 9.67004 10.56500 11.35566 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.026161 B = 0.002296 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.033122 B =12191.654615 C =13054.910199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.285 5.285 3 N -0.100 5.100 4 N -0.262 5.262 5 C -0.020 4.020 6 C -0.016 4.016 7 C -0.024 4.024 8 C -0.102 4.102 9 H 0.105 0.895 10 C 0.518 3.482 11 O -0.547 6.547 12 N -0.718 5.718 13 C 0.129 3.871 14 C -0.154 4.154 15 C 0.172 3.828 16 N -0.613 5.613 17 C -0.224 4.224 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.127 3.873 26 C -0.114 4.114 27 C -0.031 4.031 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.403 0.597 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.029 0.971 38 H 0.068 0.932 39 H 0.254 0.746 40 H 0.044 0.956 41 H 0.036 0.964 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.440 16.762 4.923 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.076 5.076 3 N -0.078 5.078 4 N -0.126 5.126 5 C -0.160 4.160 6 C -0.150 4.150 7 C -0.064 4.064 8 C -0.124 4.124 9 H 0.123 0.877 10 C 0.303 3.697 11 O -0.425 6.425 12 N -0.368 5.368 13 C 0.006 3.994 14 C -0.174 4.174 15 C 0.047 3.953 16 N -0.339 5.339 17 C -0.352 4.352 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.566 5.566 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.001 3.999 26 C -0.152 4.152 27 C -0.070 4.070 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.238 0.762 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.892 17.933 4.506 23.742 hybrid contribution 0.779 -1.683 -0.117 1.859 sum -14.113 16.250 4.388 21.966 Atomic orbital electron populations 1.22294 0.72728 1.06075 1.05117 1.46824 1.09189 1.04602 1.47035 1.78583 0.96156 1.11296 1.21758 1.74802 1.09563 1.12011 1.16222 1.21732 0.95055 0.91344 1.07837 1.21840 0.91255 0.92268 1.09645 1.19909 0.97632 0.84542 1.04277 1.21326 0.96430 0.91854 1.02786 0.87719 1.20313 0.84183 0.87513 0.77676 1.90695 1.24760 1.81925 1.45102 1.46064 1.17923 1.07428 1.65427 1.21474 0.98209 0.78424 1.01342 1.23829 0.95912 0.95948 1.01714 1.22257 0.94832 0.86108 0.92138 1.45926 1.10715 1.11459 1.65790 1.19024 0.95832 0.95367 1.24985 0.90218 1.24819 0.98664 0.97277 0.99613 1.69819 1.28063 1.20757 1.37987 0.86137 0.80711 0.81160 0.78004 1.21611 1.21671 1.20544 1.22500 0.89177 0.91593 0.96669 1.21696 0.96742 0.96329 1.00428 1.19970 0.92519 0.91147 1.03401 0.88953 0.87933 0.88112 0.88451 0.89546 0.76236 0.91929 0.91303 0.89196 0.95371 0.91363 0.93610 0.93732 0.94686 0.89332 0.90441 0.89115 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.35 11.27 59.85 0.67 1.03 16 2 N -0.28 -2.71 3.73 -64.00 -0.24 -2.95 16 3 N -0.10 -1.26 13.19 60.35 0.80 -0.47 16 4 N -0.26 -3.55 12.40 33.16 0.41 -3.14 16 5 C -0.02 -0.22 7.11 -83.12 -0.59 -0.81 16 6 C -0.02 -0.16 6.76 -82.49 -0.56 -0.71 16 7 C -0.02 -0.20 4.68 -27.74 -0.13 -0.33 16 8 C -0.10 -0.86 2.50 -91.49 -0.23 -1.08 16 9 H 0.10 0.73 8.12 -51.93 -0.42 0.31 16 10 C 0.52 5.99 7.15 -10.99 -0.08 5.91 16 11 O -0.55 -8.24 15.82 5.55 0.09 -8.15 16 12 N -0.72 -8.25 5.37 -60.30 -0.32 -8.57 16 13 C 0.13 1.81 5.53 -4.05 -0.02 1.79 16 14 C -0.15 -2.55 3.94 -89.70 -0.35 -2.90 16 15 C 0.17 3.76 6.98 -2.97 -0.02 3.74 16 16 N -0.61 -15.23 3.70 -177.87 -0.66 -15.89 16 17 C -0.22 -6.19 10.70 -15.06 -0.16 -6.35 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -26.64 11.51 55.49 0.64 -26.01 16 21 Si 0.91 21.79 29.56 -169.99 -5.02 16.76 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 C 0.13 2.45 8.50 -2.97 -0.03 2.43 16 26 C -0.11 -0.90 5.17 -26.44 -0.14 -1.04 16 27 C -0.03 -0.26 6.30 -27.70 -0.17 -0.44 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.28 7.96 -51.93 -0.41 -0.13 16 31 H 0.10 0.88 7.78 -51.93 -0.40 0.48 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.40 3.84 7.80 -40.82 -0.32 3.52 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.08 7.84 -51.93 -0.41 0.67 16 36 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.03 0.65 7.89 -51.93 -0.41 0.24 16 38 H 0.07 1.63 7.35 -51.93 -0.38 1.25 16 39 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 42 H 0.09 0.63 7.30 -51.93 -0.38 0.25 16 43 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -35.69 368.23 -7.57 -43.25 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.90 Total: -1.34 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -1.90 Total: 0.94 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.63 Total: -57.02 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.09 Total: -8.15 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.69 -7.57 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031926310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.625 kcal (2) G-P(sol) polarization free energy of solvation -35.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds