Wall clock time and date at job start Tue Mar 31 2020 04:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 120.00044 * 2 1 4 4 H 1.48501 * 109.46923 * 239.99657 * 3 2 1 5 5 H 1.48504 * 109.46709 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47176 * 119.99404 * 3 2 1 7 7 C 1.38954 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00029 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00084 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00069 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.28062 * 13 12 10 15 15 O 1.21583 * 120.00270 * 359.72083 * 14 13 12 16 16 C 1.47577 * 119.99657 * 179.72390 * 14 13 12 17 17 C 1.39756 * 120.12502 * 359.72140 * 16 14 13 18 18 C 1.37938 * 119.91645 * 179.76687 * 17 16 14 19 19 F 1.35101 * 119.91741 * 180.25201 * 18 17 16 20 20 C 1.38891 * 120.16989 * 0.51196 * 18 17 16 21 21 F 1.35098 * 119.88083 * 179.76385 * 20 18 17 22 22 C 1.38613 * 120.24703 * 359.73725 * 20 18 17 23 23 F 1.35109 * 119.95992 * 180.02562 * 22 20 18 24 24 C 1.38398 * 120.08345 * 0.02562 * 22 20 18 25 25 F 1.35102 * 120.08738 * 180.02562 * 24 22 20 26 26 H 0.96997 * 119.99888 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99865 * 0.02562 * 9 7 2 28 28 H 1.09009 * 109.46601 * 60.00324 * 12 10 9 29 29 H 1.08998 * 109.47035 * 300.00831 * 12 10 9 30 30 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 31 31 H 1.08005 * 120.04482 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8630 0.0011 13 7 2.1960 -5.9765 0.0016 14 6 1.7467 -7.2471 -0.0035 15 8 0.5513 -7.4693 -0.0035 16 6 2.7057 -8.3688 -0.0092 17 6 4.0803 -8.1163 -0.0151 18 6 4.9729 -9.1680 -0.0155 19 9 6.3017 -8.9239 -0.0161 20 6 4.5091 -10.4772 -0.0208 21 9 5.3885 -11.5027 -0.0260 22 6 3.1473 -10.7355 -0.0202 23 9 2.7025 -12.0113 -0.0248 24 6 2.2425 -9.6882 -0.0149 25 9 0.9151 -9.9399 -0.0137 26 1 -0.4850 0.8400 -0.0004 27 1 0.3535 -2.3907 -0.0002 28 1 0.6169 -4.9209 -0.8887 29 1 0.6175 -4.9205 0.8913 30 1 3.1496 -5.7992 0.0012 31 1 4.4433 -7.0991 -0.0151 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344120613.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:54 Heat of formation + Delta-G solvation = -215.872468 kcal Electronic energy + Delta-G solvation = -25574.875173 eV Core-core repulsion = 20743.040802 eV Total energy + Delta-G solvation = -4831.834371 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.057 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.39317 -49.92746 -49.32075 -48.84190 -40.37824 -38.70535 -38.00843 -34.73309 -33.91325 -31.76716 -31.40911 -30.73434 -27.92690 -25.19180 -24.37474 -23.68213 -21.06924 -19.90923 -19.22787 -18.88477 -18.63567 -18.13502 -17.57110 -17.25317 -16.94934 -16.43259 -16.25501 -15.79888 -15.64056 -15.42441 -15.41202 -15.26047 -15.09717 -14.83189 -14.68593 -14.29601 -14.02458 -13.80858 -13.41773 -12.80714 -12.50583 -12.32838 -12.29673 -11.95039 -11.70611 -11.16817 -10.56851 -10.40613 -10.25766 -9.71372 -9.70500 -9.36065 -9.08256 -8.76582 -8.19661 -6.59670 -4.02226 -0.36781 -0.02297 1.94200 2.43041 2.83165 2.98754 3.08026 3.15425 3.17315 3.20878 3.48113 3.62761 3.64591 3.75952 3.92371 4.05771 4.48601 4.71404 4.80964 4.91858 5.01125 5.08556 5.19896 5.72817 5.79094 5.85166 5.91616 6.33174 7.37982 7.39170 7.81185 8.01133 8.34546 8.95516 9.28844 9.75741 10.56809 Molecular weight = 320.06amu Principal moments of inertia in cm(-1) A = 0.025078 B = 0.002637 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.251916 B =10616.466890 C =11717.553881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.028 3.972 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.308 4.308 8 H 0.106 0.894 9 N -0.544 5.544 10 C 0.425 3.575 11 O -0.599 6.599 12 C 0.108 3.892 13 N -0.693 5.693 14 C 0.557 3.443 15 O -0.519 6.519 16 C -0.118 4.118 17 C -0.071 4.071 18 C 0.087 3.913 19 F -0.108 7.108 20 C 0.086 3.914 21 F -0.103 7.103 22 C 0.053 3.947 23 F -0.104 7.104 24 C 0.150 3.850 25 F -0.087 7.087 26 H 0.276 0.724 27 H 0.397 0.603 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.411 0.589 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.963 -18.271 -0.040 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.437 4.437 8 H 0.124 0.876 9 N -0.179 5.179 10 C 0.210 3.790 11 O -0.486 6.486 12 C -0.019 4.019 13 N -0.348 5.348 14 C 0.341 3.659 15 O -0.396 6.396 16 C -0.123 4.123 17 C -0.090 4.090 18 C 0.067 3.933 19 F -0.086 7.086 20 C 0.064 3.936 21 F -0.081 7.081 22 C 0.032 3.968 23 F -0.082 7.082 24 C 0.128 3.872 25 F -0.064 7.064 26 H 0.086 0.914 27 H 0.230 0.770 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.251 0.749 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.757 -18.284 -0.037 19.169 hybrid contribution 0.367 0.428 -0.006 0.564 sum 6.123 -17.855 -0.043 18.876 Atomic orbital electron populations 1.69599 1.06052 1.28817 1.48755 1.25343 0.95668 1.00017 0.96538 0.85862 0.78806 0.80038 0.79223 1.19707 1.20805 1.19701 1.19692 0.93479 0.81919 1.48635 0.87611 1.41780 1.09544 1.04454 1.62076 1.19638 0.88273 0.84892 0.86190 1.90496 1.13618 1.86738 1.57778 1.21065 0.91613 0.85328 1.03884 1.45557 1.12024 1.04219 1.72978 1.17469 0.87538 0.82381 0.78505 1.90891 1.15092 1.84422 1.49180 1.19857 0.93922 0.92571 1.05906 1.21349 0.90486 1.00583 0.96628 1.17044 0.79449 0.90728 1.06126 1.91634 1.28738 1.94568 1.93675 1.17411 0.85644 0.84476 1.06051 1.91619 1.66746 1.56374 1.93407 1.17009 0.89830 0.80146 1.09845 1.91625 1.89148 1.33518 1.93918 1.17225 0.78841 0.90790 1.00311 1.91699 1.28015 1.94340 1.92366 0.91403 0.76952 0.89209 0.89202 0.74910 0.80811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.98 13.05 55.50 0.72 -22.25 16 2 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 3 Si 0.93 19.79 29.55 -169.99 -5.02 14.77 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.31 -7.98 9.68 -14.93 -0.14 -8.13 16 8 H 0.11 2.85 7.16 -52.49 -0.38 2.47 16 9 N -0.54 -12.69 5.29 -10.96 -0.06 -12.75 16 10 C 0.42 8.94 7.85 -10.98 -0.09 8.85 16 11 O -0.60 -14.08 15.24 5.55 0.08 -13.99 16 12 C 0.11 1.77 6.15 -5.19 -0.03 1.74 16 13 N -0.69 -9.90 5.48 -62.51 -0.34 -10.24 16 14 C 0.56 7.74 7.76 -12.45 -0.10 7.64 16 15 O -0.52 -8.84 15.33 5.29 0.08 -8.76 16 16 C -0.12 -1.27 5.88 -104.92 -0.62 -1.89 16 17 C -0.07 -0.61 9.51 -39.12 -0.37 -0.98 16 18 C 0.09 0.76 7.29 -39.45 -0.29 0.47 16 19 F -0.11 -1.01 17.17 2.25 0.04 -0.97 16 20 C 0.09 0.79 7.31 -39.20 -0.29 0.50 16 21 F -0.10 -1.01 17.08 2.25 0.04 -0.97 16 22 C 0.05 0.52 7.30 -39.38 -0.29 0.24 16 23 F -0.10 -1.09 17.09 2.25 0.04 -1.05 16 24 C 0.15 1.65 7.29 -38.92 -0.28 1.37 16 25 F -0.09 -1.14 15.45 2.25 0.03 -1.11 16 26 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 27 H 0.40 8.88 7.90 -40.82 -0.32 8.56 16 28 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 29 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.41 5.48 5.46 -40.82 -0.22 5.26 16 31 H 0.17 1.26 6.40 -52.48 -0.34 0.92 16 LS Contribution 305.09 15.07 4.60 4.60 Total: -1.00 -29.26 305.09 -3.61 -32.87 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -1.24 Total: 9.44 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: -2.59 Total: 10.41 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.32 Total: -45.24 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.17 Total: -22.75 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.15 Total: -4.09 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.26 -3.61 -32.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344120613.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.001 kcal (2) G-P(sol) polarization free energy of solvation -29.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds