Wall clock time and date at job start Tue Mar 31 2020 04:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 120.00044 * 2 1 4 4 H 1.48501 * 109.46923 * 239.99657 * 3 2 1 5 5 H 1.48504 * 109.46709 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47176 * 119.99404 * 3 2 1 7 7 C 1.38954 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00029 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00084 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00069 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.28062 * 13 12 10 15 15 O 1.21583 * 120.00270 * 359.72083 * 14 13 12 16 16 C 1.47577 * 119.99657 * 179.72390 * 14 13 12 17 17 C 1.39756 * 120.12502 * 359.72140 * 16 14 13 18 18 C 1.37938 * 119.91645 * 179.76687 * 17 16 14 19 19 F 1.35101 * 119.91741 * 180.25201 * 18 17 16 20 20 C 1.38891 * 120.16989 * 0.51196 * 18 17 16 21 21 F 1.35098 * 119.88083 * 179.76385 * 20 18 17 22 22 C 1.38613 * 120.24703 * 359.73725 * 20 18 17 23 23 F 1.35109 * 119.95992 * 180.02562 * 22 20 18 24 24 C 1.38398 * 120.08345 * 0.02562 * 22 20 18 25 25 F 1.35102 * 120.08738 * 180.02562 * 24 22 20 26 26 H 0.96997 * 119.99888 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99865 * 0.02562 * 9 7 2 28 28 H 1.09009 * 109.46601 * 60.00324 * 12 10 9 29 29 H 1.08998 * 109.47035 * 300.00831 * 12 10 9 30 30 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 31 31 H 1.08005 * 120.04482 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8630 0.0011 13 7 2.1960 -5.9765 0.0016 14 6 1.7467 -7.2471 -0.0035 15 8 0.5513 -7.4693 -0.0035 16 6 2.7057 -8.3688 -0.0092 17 6 4.0803 -8.1163 -0.0151 18 6 4.9729 -9.1680 -0.0155 19 9 6.3017 -8.9239 -0.0161 20 6 4.5091 -10.4772 -0.0208 21 9 5.3885 -11.5027 -0.0260 22 6 3.1473 -10.7355 -0.0202 23 9 2.7025 -12.0113 -0.0248 24 6 2.2425 -9.6882 -0.0149 25 9 0.9151 -9.9399 -0.0137 26 1 -0.4850 0.8400 -0.0004 27 1 0.3535 -2.3907 -0.0002 28 1 0.6169 -4.9209 -0.8887 29 1 0.6175 -4.9205 0.8913 30 1 3.1496 -5.7992 0.0012 31 1 4.4433 -7.0991 -0.0151 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344120613.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:54 Heat of formation + Delta-G solvation = -235.395645 kcal Electronic energy + Delta-G solvation = -25575.721761 eV Core-core repulsion = 20743.040802 eV Total energy + Delta-G solvation = -4832.680960 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.057 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.19791 -50.75806 -50.15364 -49.66833 -41.48470 -40.15483 -39.20297 -36.29735 -35.47633 -33.37844 -32.58345 -31.54821 -29.32657 -26.68979 -25.51850 -24.56757 -22.16017 -21.43985 -20.31733 -19.99835 -19.66841 -19.50815 -18.38120 -18.33120 -17.80640 -17.53773 -17.11211 -17.09498 -16.83261 -16.61321 -16.44047 -16.33526 -16.14357 -15.97767 -15.72566 -15.65709 -15.48635 -15.11756 -14.54309 -13.95665 -13.68389 -13.62438 -13.51852 -13.29771 -12.93473 -12.85956 -12.44440 -12.12964 -11.53575 -11.45541 -10.55869 -10.54579 -10.31826 -10.12793 -10.06677 -8.49185 -5.98993 -1.19820 -0.80172 1.05861 1.39986 1.44505 1.50956 1.56843 1.83840 1.91621 2.00107 2.30425 2.33995 2.68079 2.84076 2.97338 2.97589 3.15249 3.18738 3.65884 3.93093 4.10104 4.20575 4.25026 4.42169 4.43868 4.46451 5.03935 5.08054 5.40656 5.93302 6.25383 6.49751 6.87465 7.05716 7.46534 7.95927 8.67279 Molecular weight = 320.06amu Principal moments of inertia in cm(-1) A = 0.025078 B = 0.002637 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.251916 B =10616.466890 C =11717.553881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.089 0.911 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.622 6.622 12 C 0.120 3.880 13 N -0.691 5.691 14 C 0.563 3.437 15 O -0.552 6.552 16 C -0.121 4.121 17 C -0.049 4.049 18 C 0.098 3.902 19 F -0.107 7.107 20 C 0.098 3.902 21 F -0.104 7.104 22 C 0.058 3.942 23 F -0.108 7.108 24 C 0.145 3.855 25 F -0.102 7.102 26 H 0.279 0.721 27 H 0.399 0.601 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.417 0.583 31 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.996 -18.561 -0.043 19.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.107 0.893 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.510 6.510 12 C -0.008 4.008 13 N -0.346 5.346 14 C 0.349 3.651 15 O -0.431 6.431 16 C -0.126 4.126 17 C -0.069 4.069 18 C 0.078 3.922 19 F -0.085 7.085 20 C 0.077 3.923 21 F -0.082 7.082 22 C 0.037 3.963 23 F -0.086 7.086 24 C 0.123 3.877 25 F -0.080 7.080 26 H 0.089 0.911 27 H 0.233 0.767 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.258 0.742 31 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 6.804 -18.597 -0.040 19.802 hybrid contribution 0.122 0.397 -0.005 0.416 sum 6.926 -18.199 -0.045 19.473 Atomic orbital electron populations 1.69666 1.07001 1.29660 1.49298 1.26090 0.96468 1.02632 0.95845 0.84965 0.77736 0.76422 0.79129 1.19468 1.19942 1.19461 1.19708 0.93041 0.83491 1.50310 0.89322 1.41832 1.09654 1.04610 1.63308 1.20356 0.88146 0.85815 0.83669 1.90476 1.14965 1.87481 1.58047 1.20891 0.91447 0.83293 1.05125 1.45491 1.11960 1.03956 1.73181 1.17724 0.87526 0.82541 0.77285 1.90881 1.16689 1.84836 1.50680 1.19486 0.94068 0.91283 1.07717 1.21382 0.89310 1.01333 0.94835 1.16907 0.79354 0.90356 1.05623 1.91648 1.28746 1.94528 1.93613 1.17372 0.85226 0.84585 1.05163 1.91625 1.66718 1.56560 1.93304 1.16866 0.89808 0.79683 1.09986 1.91617 1.89256 1.33755 1.93985 1.17300 0.78301 0.91186 1.00868 1.91659 1.29269 1.94469 1.92636 0.91124 0.76658 0.87959 0.87956 0.74218 0.79179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.05 13.05 21.66 0.28 -46.77 16 2 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 3 Si 0.99 40.17 29.55 68.60 2.03 42.20 16 4 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.34 -17.56 9.68 84.04 0.81 -16.74 16 8 H 0.09 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.56 -26.12 5.29 -306.98 -1.62 -27.74 16 10 C 0.43 17.99 7.85 87.66 0.69 18.68 16 11 O -0.62 -28.84 15.24 -3.07 -0.05 -28.89 16 12 C 0.12 3.76 6.15 85.63 0.53 4.29 16 13 N -0.69 -18.63 5.48 -469.95 -2.57 -21.20 16 14 C 0.56 14.90 7.76 86.71 0.67 15.57 16 15 O -0.55 -18.37 15.33 -3.98 -0.06 -18.43 16 16 C -0.12 -2.41 5.88 -20.06 -0.12 -2.53 16 17 C -0.05 -0.72 9.51 22.57 0.21 -0.51 16 18 C 0.10 1.45 7.29 22.36 0.16 1.61 16 19 F -0.11 -1.71 17.17 44.97 0.77 -0.94 16 20 C 0.10 1.59 7.31 22.52 0.16 1.75 16 21 F -0.10 -1.81 17.08 44.97 0.77 -1.04 16 22 C 0.06 1.05 7.30 22.40 0.16 1.22 16 23 F -0.11 -2.14 17.09 44.97 0.77 -1.37 16 24 C 0.15 3.03 7.29 22.70 0.17 3.20 16 25 F -0.10 -2.66 15.45 44.97 0.69 -1.97 16 26 H 0.28 13.52 8.31 -92.71 -0.77 12.75 16 27 H 0.40 17.97 7.90 -92.71 -0.73 17.24 16 28 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 29 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.42 10.34 5.46 -92.71 -0.51 9.83 16 31 H 0.19 2.20 6.40 -2.91 -0.02 2.18 16 Total: -1.00 -61.69 305.09 4.96 -56.72 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.03 Total: 22.89 kcal Atomic # 6 Polarization: 22.61 SS G_CDS: 3.92 Total: 26.54 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -3.91 Total: -95.71 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -0.11 Total: -47.32 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 3.00 Total: -5.32 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -61.69 4.96 -56.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344120613.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.675 kcal (2) G-P(sol) polarization free energy of solvation -61.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds