Wall clock time and date at job start Tue Mar 31 2020 04:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86791 * 119.99762 * 2 1 4 4 H 1.48504 * 109.47119 * 269.99518 * 3 2 1 5 5 H 1.48502 * 109.47497 * 29.99851 * 3 2 1 6 6 H 1.48506 * 109.47243 * 150.00155 * 3 2 1 7 7 C 1.37880 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99579 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00058 * 359.97438 * 7 2 1 10 10 O 1.42900 * 113.41641 * 313.20498 * 9 7 2 11 11 C 1.53495 * 114.20653 * 179.97438 * 9 7 2 12 12 N 1.47063 * 87.98656 * 220.35010 * 11 9 7 13 13 S 1.65605 * 136.05539 * 207.08589 * 12 11 9 14 14 O 1.42101 * 106.40283 * 336.45747 * 13 12 11 15 15 O 1.42100 * 106.40315 * 203.53328 * 13 12 11 16 16 N 1.65606 * 107.21835 * 89.99705 * 13 12 11 17 17 C 1.47421 * 125.64540 * 90.02214 * 16 13 12 18 18 C 1.54917 * 104.82974 * 204.09472 * 17 16 13 19 19 C 1.55151 * 101.58025 * 322.99292 * 18 17 16 20 20 C 1.47017 * 125.64968 * 269.98712 * 16 13 12 21 21 H 1.08998 * 109.88306 * 59.55265 * 20 16 13 22 22 C 1.50703 * 109.87787 * 298.39205 * 20 16 13 23 23 O 1.20823 * 120.00396 * 359.97438 * 22 20 16 24 24 O 1.34232 * 119.99533 * 180.02562 * 22 20 16 25 25 C 1.47065 * 87.88660 * 27.34039 * 12 11 9 26 26 H 0.96992 * 120.00102 * 0.02562 * 1 2 3 27 27 H 0.96698 * 114.00108 * 46.79535 * 10 9 7 28 28 H 1.08997 * 113.46768 * 105.56715 * 11 9 7 29 29 H 1.09006 * 113.46641 * 335.13027 * 11 9 7 30 30 H 1.09001 * 110.36853 * 85.26062 * 17 16 13 31 31 H 1.08995 * 110.46528 * 322.97764 * 17 16 13 32 32 H 1.08998 * 111.00193 * 81.06771 * 18 17 16 33 33 H 1.09004 * 111.00194 * 204.91626 * 18 17 16 34 34 H 1.08998 * 110.71811 * 153.86772 * 19 18 17 35 35 H 1.09005 * 110.72107 * 277.13714 * 19 18 17 36 36 H 0.96705 * 116.99921 * 179.97438 * 24 22 20 37 37 H 1.08996 * 113.46368 * 87.44224 * 25 12 11 38 38 H 1.08996 * 113.46923 * 217.87695 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0017 10 8 0.1900 -2.5414 0.9580 11 6 2.1488 -3.7442 0.0016 12 7 1.2093 -4.3578 -0.9490 13 16 0.7489 -5.8988 -1.3440 14 8 1.8211 -6.7487 -0.9603 15 8 0.2410 -5.8384 -2.6698 16 7 -0.5315 -6.2926 -0.3703 17 6 -1.9531 -6.0610 -0.6847 18 6 -2.6594 -6.0022 0.6928 19 6 -1.8770 -7.0789 1.4902 20 6 -0.4388 -6.9317 0.9504 21 1 0.1479 -6.3072 1.6241 22 6 0.2008 -8.2899 0.8187 23 8 0.5472 -8.6919 -0.2667 24 8 0.3847 -9.0535 1.9073 25 6 0.8634 -3.0011 -1.3990 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3736 -1.7557 0.9551 28 1 2.1858 -4.2528 0.9649 29 1 3.1382 -3.5660 -0.4198 30 1 -2.3491 -6.8843 -1.2792 31 1 -2.0772 -5.1170 -1.2152 32 1 -2.5453 -5.0187 1.1486 33 1 -3.7122 -6.2701 0.6037 34 1 -1.9113 -6.8680 2.5590 35 1 -2.2679 -8.0745 1.2798 36 1 0.7986 -9.9171 1.7729 37 1 1.5138 -2.6270 -2.1895 38 1 -0.1948 -2.8766 -1.6288 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480254.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:55 Heat of formation + Delta-G solvation = -163.383417 kcal Electronic energy + Delta-G solvation = -26886.202999 eV Core-core repulsion = 22857.405720 eV Total energy + Delta-G solvation = -4028.797278 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.097 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.46799 -38.62885 -38.01284 -36.75498 -35.98543 -35.33926 -33.98300 -32.17686 -30.94753 -29.89789 -27.85161 -25.09124 -24.70638 -24.03582 -21.68313 -21.29169 -19.64142 -18.56504 -18.13543 -17.88538 -17.15242 -17.03237 -16.35235 -15.76817 -15.37454 -15.20663 -14.79439 -14.28348 -14.02312 -13.65252 -13.57057 -13.34354 -13.15442 -13.01452 -12.64699 -12.13092 -12.03266 -11.70067 -11.68075 -11.61219 -11.54957 -11.50944 -11.33146 -11.25980 -11.09224 -10.98156 -10.79827 -10.50711 -10.42591 -10.26228 -9.38439 -9.10672 -8.79496 -8.56759 -8.08165 -6.39344 -4.48492 0.89087 2.26378 2.86823 3.15006 3.23088 3.25595 3.30661 4.00928 4.18530 4.23857 4.39215 4.77271 4.83412 4.88394 5.11252 5.22795 5.42163 5.42682 5.58383 5.65605 5.71522 5.76144 5.99945 6.05453 6.09827 6.15296 6.21662 6.28950 6.49242 6.51180 6.70653 6.78598 7.02258 7.50948 7.66473 7.83982 7.91727 8.54625 9.22083 9.47543 10.67116 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.021114 B = 0.004469 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.840830 B = 6263.313726 C = 6566.233142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.072 0.928 9 C 0.242 3.758 10 O -0.572 6.572 11 C 0.134 3.866 12 N -1.049 6.049 13 S 2.820 3.180 14 O -0.968 6.968 15 O -0.978 6.978 16 N -0.997 5.997 17 C 0.122 3.878 18 C -0.129 4.129 19 C -0.111 4.111 20 C 0.166 3.834 21 H 0.117 0.883 22 C 0.460 3.540 23 O -0.489 6.489 24 O -0.516 6.516 25 C 0.105 3.895 26 H 0.273 0.727 27 H 0.393 0.607 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.408 0.592 37 H 0.078 0.922 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.416 -10.619 4.612 12.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.572 4.572 8 H 0.090 0.910 9 C 0.198 3.802 10 O -0.385 6.385 11 C 0.009 3.991 12 N -0.892 5.892 13 S 2.832 3.168 14 O -0.952 6.952 15 O -0.963 6.963 16 N -0.834 5.834 17 C -0.003 4.003 18 C -0.168 4.168 19 C -0.150 4.150 20 C 0.057 3.943 21 H 0.134 0.866 22 C 0.299 3.701 23 O -0.374 6.374 24 O -0.328 6.328 25 C -0.021 4.021 26 H 0.083 0.917 27 H 0.250 0.750 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.267 0.733 37 H 0.096 0.904 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.013 -11.600 3.682 13.162 hybrid contribution 0.373 0.923 -0.191 1.014 sum -4.641 -10.677 3.491 12.154 Atomic orbital electron populations 1.69253 1.06169 1.28110 1.50480 1.25064 0.95012 0.99843 0.93104 0.86337 0.79801 0.82002 0.78383 1.20341 1.20961 1.19573 1.21522 0.93987 0.90021 1.51651 0.91007 1.19731 0.85221 0.90874 0.84374 1.85978 1.45056 1.48338 1.59092 1.22789 0.93091 0.92781 0.90428 1.60222 1.54453 1.20960 1.53515 1.00721 0.72180 0.71403 0.72510 1.93587 1.52846 1.64848 1.83889 1.93556 1.81129 1.87117 1.34452 1.59187 1.20729 1.72942 1.30527 1.21996 0.79121 1.01727 0.97477 1.22848 0.99142 1.00130 0.94664 1.22557 0.90745 1.00386 1.01273 1.20721 0.99331 0.87711 0.86579 0.86562 1.23956 0.76257 0.87896 0.81995 1.90749 1.45711 1.72442 1.28482 1.84491 1.75900 1.33403 1.38958 1.23659 0.99833 0.76528 1.02057 0.91659 0.75031 0.92095 0.89799 0.91480 0.89870 0.89133 0.89634 0.88570 0.90406 0.73322 0.90402 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.14 11.01 55.43 0.61 -21.53 16 2 C 0.07 1.75 5.40 -17.81 -0.10 1.65 16 3 Si 0.91 19.13 29.54 -169.99 -5.02 14.11 16 4 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.53 -13.01 8.69 -34.44 -0.30 -13.31 16 8 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 9 C 0.24 5.55 1.59 -91.12 -0.14 5.41 16 10 O -0.57 -13.40 13.55 -35.23 -0.48 -13.87 16 11 C 0.13 2.77 8.14 -8.51 -0.07 2.70 16 12 N -1.05 -21.68 4.29 -125.02 -0.54 -22.21 16 13 S 2.82 57.41 6.57 -107.50 -0.71 56.70 16 14 O -0.97 -21.53 15.02 -66.56 -1.00 -22.53 16 15 O -0.98 -22.06 17.72 -57.17 -1.01 -23.07 16 16 N -1.00 -16.45 3.19 -105.64 -0.34 -16.79 16 17 C 0.12 1.65 6.98 -2.53 -0.02 1.63 16 18 C -0.13 -1.31 7.09 -24.58 -0.17 -1.49 16 19 C -0.11 -1.10 6.45 -24.90 -0.16 -1.26 16 20 C 0.17 2.31 3.58 -68.11 -0.24 2.06 16 21 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 22 C 0.46 6.83 6.97 36.01 0.25 7.08 16 23 O -0.49 -9.16 14.65 -26.35 -0.39 -9.55 16 24 O -0.52 -5.62 13.40 -39.26 -0.53 -6.14 16 25 C 0.10 2.30 8.16 -8.37 -0.07 2.23 16 26 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 27 H 0.39 9.53 6.33 45.56 0.29 9.82 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.69 7.84 -51.93 -0.41 0.28 16 36 H 0.41 2.78 9.10 45.56 0.41 3.19 16 37 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 334.03 15.07 5.03 5.03 Total: -1.00 -32.41 334.03 -8.85 -41.26 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -3.47 Total: 11.88 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -1.02 Total: 6.71 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -0.26 Total: -60.53 kcal Atomic # 8 Polarization: -71.77 SS G_CDS: -3.40 Total: -75.17 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Atomic # 16 Polarization: 57.41 SS G_CDS: -0.71 Total: 56.70 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.41 -8.85 -41.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480254.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.121 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds