Wall clock time and date at job start Tue Mar 31 2020 05:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86798 * 120.00188 * 2 1 4 4 H 1.48506 * 109.47187 * 240.00183 * 3 2 1 5 5 H 1.48500 * 109.47115 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47141 * 120.00144 * 3 2 1 7 7 C 1.39876 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00143 * 196.37607 * 7 2 1 9 9 C 1.41122 * 120.00294 * 16.37292 * 7 2 1 10 10 C 1.40891 * 120.16190 * 206.45509 * 9 7 2 11 11 C 1.36338 * 119.83012 * 180.02562 * 10 9 7 12 12 C 1.39535 * 120.16782 * 0.02562 * 11 10 9 13 13 N 1.39035 * 119.83996 * 179.97438 * 12 11 10 14 14 C 1.46970 * 126.05654 * 66.65060 * 13 12 11 15 15 C 1.51397 * 104.90672 * 180.02562 * 14 13 12 16 16 O 1.21615 * 127.11164 * 180.02562 * 15 14 13 17 17 C 1.40290 * 105.77825 * 0.02562 * 15 14 13 18 18 C 1.48159 * 125.06987 * 180.02562 * 17 15 14 19 19 C 1.39465 * 120.13106 * 295.02398 * 18 17 15 20 20 C 1.37988 * 119.86270 * 179.97438 * 19 18 17 21 21 C 1.38342 * 120.13302 * 359.97438 * 20 19 18 22 22 C 1.38338 * 120.27040 * 0.02562 * 21 20 19 23 23 C 1.37984 * 120.13687 * 359.97438 * 22 21 20 24 24 C 1.36317 * 126.05287 * 246.96883 * 13 12 11 25 25 N 1.36643 * 124.21852 * 359.97438 * 24 13 12 26 26 C 1.39536 * 120.32475 * 0.23434 * 12 11 10 27 27 C 1.36342 * 120.16032 * 359.48313 * 26 12 11 28 28 H 0.97002 * 119.99595 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.08160 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.91307 * 179.97438 * 11 10 9 31 31 H 1.09000 * 110.35197 * 61.14288 * 14 13 12 32 32 H 1.09012 * 110.35257 * 298.86112 * 14 13 12 33 33 H 1.07997 * 120.06924 * 359.97438 * 19 18 17 34 34 H 1.07996 * 119.92634 * 179.72120 * 20 19 18 35 35 H 1.08005 * 119.86301 * 180.02562 * 21 20 19 36 36 H 1.08003 * 119.93328 * 180.02562 * 22 21 20 37 37 H 1.07997 * 120.06890 * 180.02562 * 23 22 21 38 38 H 0.97003 * 119.99872 * 174.26269 * 25 24 13 39 39 H 0.97002 * 120.00328 * 354.26231 * 25 24 13 40 40 H 1.07999 * 119.92090 * 179.74576 * 26 12 11 41 41 H 1.08005 * 120.08458 * 180.25512 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0967 1.6964 -1.2126 5 1 1.2780 2.7464 -0.0006 6 1 3.0967 1.6963 1.2125 7 6 2.0082 -1.2114 -0.0005 8 1 3.0554 -1.2305 0.2632 9 6 1.3456 -2.4086 -0.3456 10 6 1.8061 -3.6423 0.1555 11 6 1.1611 -4.7949 -0.1827 12 6 0.0479 -4.7549 -1.0231 13 7 -0.6043 -5.9345 -1.3639 14 6 -1.3553 -6.8037 -0.4471 15 6 -1.8585 -7.9398 -1.3121 16 8 -2.5297 -8.8900 -0.9579 17 6 -1.3904 -7.6697 -2.6068 18 6 -1.6400 -8.5171 -3.7962 19 6 -1.1150 -9.8077 -3.8590 20 6 -1.3514 -10.5923 -4.9692 21 6 -2.1077 -10.1013 -6.0184 22 6 -2.6311 -8.8220 -5.9619 23 6 -2.4017 -8.0278 -4.8571 24 6 -0.6555 -6.4927 -2.6065 25 7 -0.0600 -5.9583 -3.7141 26 6 -0.4106 -3.5373 -1.5275 27 6 0.2208 -2.3761 -1.1934 28 1 -0.4850 0.8401 -0.0004 29 1 2.6683 -3.6749 0.8050 30 1 1.5131 -5.7413 0.2003 31 1 -2.1927 -6.2600 -0.0098 32 1 -0.6997 -7.1854 0.3358 33 1 -0.5248 -10.1922 -3.0404 34 1 -0.9416 -11.5901 -5.0209 35 1 -2.2903 -10.7193 -6.8851 36 1 -3.2211 -8.4443 -6.7839 37 1 -2.8111 -7.0294 -4.8140 38 1 -0.0644 -6.4484 -4.5512 39 1 0.3671 -5.0889 -3.6634 40 1 -1.2703 -3.5144 -2.1808 41 1 -0.1376 -1.4339 -1.5812 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003180142.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:10 Heat of formation + Delta-G solvation = 24.737168 kcal Electronic energy + Delta-G solvation = -25219.266110 eV Core-core repulsion = 21642.157510 eV Total energy + Delta-G solvation = -3577.108600 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.02241 -39.82398 -39.24147 -38.30040 -35.86018 -35.05012 -33.26493 -31.80037 -31.63882 -31.42487 -29.47553 -28.02495 -26.53687 -23.73459 -23.24820 -23.06606 -22.54358 -21.47864 -20.42828 -19.34553 -18.86106 -17.89836 -17.33411 -17.17445 -16.84601 -16.33150 -16.02093 -15.77474 -15.61455 -15.24205 -15.02924 -14.94652 -14.59971 -14.15490 -14.07960 -13.97092 -13.84821 -13.67047 -13.42496 -13.22758 -13.16314 -12.84083 -12.70081 -12.41567 -11.99138 -11.83884 -11.75458 -11.48834 -11.10936 -10.49294 -10.14696 -9.71225 -9.61849 -9.57655 -9.24831 -8.74749 -8.32777 -6.43324 0.44403 0.61393 0.64435 0.77813 1.05401 1.39905 1.47569 1.51363 1.69839 2.17080 2.23492 2.58263 2.83008 3.02066 3.44352 3.59110 4.14850 4.21390 4.26267 4.28241 4.29584 4.35550 4.38887 4.40982 4.59722 4.81445 4.85072 4.92707 4.98044 5.05542 5.10999 5.25489 5.29405 5.37359 5.41944 5.50692 5.57504 5.73611 5.74695 5.90124 5.94768 5.98468 6.01255 6.20877 6.27801 6.50210 6.65659 6.75397 6.82192 6.98232 7.08841 8.21177 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.025119 B = 0.002739 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.421968 B =10220.353006 C =10704.506067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.038 3.962 3 Si 0.980 3.020 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.482 4.482 8 H 0.083 0.917 9 C 0.092 3.908 10 C -0.228 4.228 11 C -0.069 4.069 12 C -0.016 4.016 13 N -0.519 5.519 14 C 0.052 3.948 15 C 0.392 3.608 16 O -0.552 6.552 17 C -0.452 4.452 18 C 0.022 3.978 19 C -0.131 4.131 20 C -0.123 4.123 21 C -0.137 4.137 22 C -0.120 4.120 23 C -0.135 4.135 24 C 0.542 3.458 25 N -0.811 5.811 26 C -0.085 4.085 27 C -0.173 4.173 28 H 0.292 0.708 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.118 0.882 38 H 0.427 0.573 39 H 0.413 0.587 40 H 0.105 0.895 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.110 -7.730 -10.120 12.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.510 4.510 8 H 0.101 0.899 9 C 0.090 3.910 10 C -0.248 4.248 11 C -0.088 4.088 12 C -0.106 4.106 13 N -0.221 5.221 14 C -0.071 4.071 15 C 0.286 3.714 16 O -0.441 6.441 17 C -0.466 4.466 18 C 0.022 3.978 19 C -0.150 4.150 20 C -0.141 4.141 21 C -0.155 4.155 22 C -0.138 4.138 23 C -0.153 4.153 24 C 0.312 3.688 25 N -0.353 5.353 26 C -0.105 4.105 27 C -0.193 4.193 28 H 0.103 0.897 29 H 0.124 0.876 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.123 0.877 34 H 0.154 0.846 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.261 0.739 39 H 0.244 0.756 40 H 0.123 0.877 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.368 -7.842 -9.701 12.480 hybrid contribution 0.424 1.151 0.269 1.256 sum 0.056 -6.691 -9.432 11.564 Atomic orbital electron populations 1.69857 1.08947 1.31139 1.33812 1.26752 0.95466 1.04560 0.91130 0.85256 0.78820 0.75616 0.80198 1.18241 1.19444 1.18458 1.19901 0.98184 0.92134 1.40819 0.89898 1.18030 0.91508 0.93049 0.88439 1.20805 1.04590 0.92545 1.06865 1.20536 0.93559 0.97583 0.97154 1.16692 0.99111 0.82687 1.12111 1.43339 1.51167 1.21777 1.05831 1.22625 0.97663 0.92348 0.94462 1.19775 0.78137 0.84451 0.89083 1.90560 1.39245 1.32812 1.81435 1.18478 1.26890 1.04112 0.97092 1.17962 0.95568 0.92907 0.91387 1.21399 1.00608 0.94711 0.98256 1.21316 0.99089 1.00128 0.93603 1.21418 0.98520 0.96237 0.99301 1.21342 0.99866 0.94499 0.98118 1.21446 0.99050 1.00578 0.94274 1.18079 0.83070 0.86428 0.81243 1.41764 1.59485 1.24087 1.09918 1.20589 0.98229 0.91515 1.00130 1.20867 1.00102 0.96654 1.01707 0.89716 0.87573 0.86812 0.87323 0.86660 0.87701 0.84591 0.83869 0.84079 0.86362 0.73889 0.75575 0.87709 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.09 10.99 21.82 0.24 -37.85 16 2 C 0.04 1.70 5.15 85.23 0.44 2.14 16 3 Si 0.98 33.97 29.59 68.60 2.03 36.00 16 4 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 5 H -0.27 -8.99 7.11 99.48 0.71 -8.28 16 6 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 7 C -0.48 -22.81 9.03 23.37 0.21 -22.60 16 8 H 0.08 3.76 7.90 -2.91 -0.02 3.73 16 9 C 0.09 4.32 5.56 -21.27 -0.12 4.20 16 10 C -0.23 -9.59 9.74 22.48 0.22 -9.37 16 11 C -0.07 -2.57 9.89 22.14 0.22 -2.36 16 12 C -0.02 -0.57 5.32 38.63 0.21 -0.37 16 13 N -0.52 -16.61 3.00 -513.78 -1.54 -18.15 16 14 C 0.05 1.64 7.45 85.77 0.64 2.28 16 15 C 0.39 14.11 7.62 26.41 0.20 14.31 16 16 O -0.55 -23.49 17.99 -4.08 -0.07 -23.56 16 17 C -0.45 -14.53 5.46 -20.02 -0.11 -14.64 16 18 C 0.02 0.67 5.09 -20.05 -0.10 0.57 16 19 C -0.13 -3.75 9.78 22.51 0.22 -3.53 16 20 C -0.12 -2.83 10.03 22.24 0.22 -2.60 16 21 C -0.14 -2.74 10.04 22.32 0.22 -2.51 16 22 C -0.12 -2.52 10.03 22.23 0.22 -2.30 16 23 C -0.14 -3.44 9.57 22.51 0.22 -3.23 16 24 C 0.54 15.87 7.68 132.54 1.02 16.88 16 25 N -0.81 -18.65 8.94 -54.89 -0.49 -19.14 16 26 C -0.08 -3.29 9.35 22.14 0.21 -3.08 16 27 C -0.17 -7.77 8.62 22.48 0.19 -7.58 16 28 H 0.29 12.43 8.30 -92.71 -0.77 11.66 16 29 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 30 H 0.11 3.79 8.06 -2.91 -0.02 3.76 16 31 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.12 3.33 8.14 -2.38 -0.02 3.31 16 33 H 0.10 3.12 8.06 -2.91 -0.02 3.09 16 34 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.12 2.86 8.06 -2.91 -0.02 2.84 16 38 H 0.43 8.07 8.17 -92.71 -0.76 7.32 16 39 H 0.41 9.43 7.91 -92.71 -0.73 8.70 16 40 H 0.10 3.75 8.06 -2.91 -0.02 3.73 16 41 H 0.11 5.08 6.24 -2.91 -0.02 5.06 16 Total: -1.00 -57.79 356.50 4.09 -53.70 By element: Atomic # 1 Polarization: 43.20 SS G_CDS: -0.41 Total: 42.80 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 4.33 Total: -33.79 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -1.79 Total: -75.14 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.07 Total: -23.56 kcal Atomic # 14 Polarization: 33.97 SS G_CDS: 2.03 Total: 36.00 kcal Total: -57.79 4.09 -53.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003180142.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.434 kcal (2) G-P(sol) polarization free energy of solvation -57.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds