Wall clock time and date at job start Tue Mar 31 2020 05:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99680 * 2 1 4 4 H 1.48497 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47548 * 300.00218 * 3 2 1 6 6 H 1.48509 * 109.47269 * 59.99938 * 3 2 1 7 7 C 1.38807 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99768 * 190.56032 * 7 2 1 9 9 N 1.36936 * 120.00184 * 10.29029 * 7 2 1 10 10 C 1.46969 * 120.59322 * 30.82271 * 9 7 2 11 11 C 1.53807 * 108.39757 * 124.75617 * 10 9 7 12 12 N 1.46972 * 108.57907 * 49.63720 * 11 10 9 13 13 C 1.34777 * 120.58932 * 124.66501 * 12 11 10 14 14 O 1.21608 * 119.99792 * 185.29772 * 13 12 11 15 15 C 1.47430 * 120.00674 * 5.30193 * 13 12 11 16 16 C 1.39738 * 120.20604 * 50.16713 * 15 13 12 17 17 C 1.37743 * 119.92525 * 180.02562 * 16 15 13 18 18 N 1.48030 * 119.82216 * 180.02562 * 17 16 15 19 19 O 1.21794 * 120.00052 * 359.97438 * 18 17 16 20 20 O 1.21800 * 119.99597 * 179.97438 * 18 17 16 21 21 C 1.38611 * 120.35626 * 0.02562 * 17 16 15 22 22 C 1.37959 * 120.41755 * 0.02562 * 21 17 16 23 23 C 1.38953 * 120.06536 * 359.67865 * 22 21 17 24 24 N 1.38877 * 120.17639 * 180.32149 * 23 22 21 25 25 C 1.46958 * 118.81400 * 304.64676 * 12 11 10 26 26 C 1.46962 * 120.59345 * 211.10108 * 9 7 2 27 27 H 0.96996 * 120.00093 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.61207 * 244.54274 * 10 9 7 29 29 H 1.09000 * 109.60748 * 5.05195 * 10 9 7 30 30 H 1.08997 * 109.74746 * 289.84997 * 11 10 9 31 31 H 1.09001 * 109.53499 * 169.30517 * 11 10 9 32 32 H 1.08001 * 120.03678 * 0.02906 * 16 15 13 33 33 H 1.07999 * 119.79291 * 179.97438 * 21 17 16 34 34 H 1.08000 * 119.96204 * 180.02562 * 22 21 17 35 35 H 0.96998 * 119.99788 * 185.88147 * 24 23 22 36 36 H 0.97000 * 120.00122 * 5.87915 * 24 23 22 37 37 H 1.08998 * 109.61013 * 295.48143 * 25 12 11 38 38 H 1.08997 * 109.61070 * 174.96851 * 25 12 11 39 39 H 1.09003 * 109.61071 * 354.94718 * 26 9 7 40 40 H 1.09002 * 109.60963 * 115.46287 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0766 -1.2099 0.1720 9 7 1.3422 -2.3786 -0.2108 10 6 0.1442 -2.4161 -1.0613 11 6 0.3650 -3.4644 -2.1649 12 7 0.8295 -4.7111 -1.5403 13 6 0.1719 -5.8690 -1.7483 14 8 0.5067 -6.8741 -1.1513 15 6 -0.9534 -5.9171 -2.6996 16 6 -0.8069 -5.3983 -3.9888 17 6 -1.8623 -5.4458 -4.8727 18 7 -1.7043 -4.8960 -6.2380 19 8 -0.6435 -4.4029 -6.5770 20 8 -2.6353 -4.9368 -7.0223 21 6 -3.0713 -6.0057 -4.4906 22 6 -3.2322 -6.5212 -3.2211 23 6 -2.1773 -6.4879 -2.3174 24 7 -2.3346 -7.0122 -1.0411 25 6 2.0242 -4.6726 -0.6853 26 6 1.8067 -3.6251 0.4138 27 1 -0.4850 0.8400 0.0004 28 1 -0.7227 -2.6906 -0.4604 29 1 -0.0154 -1.4365 -1.5119 30 1 1.1162 -3.1058 -2.8685 31 1 -0.5736 -3.6454 -2.6888 32 1 0.1328 -4.9605 -4.2918 33 1 -3.8929 -6.0378 -5.1909 34 1 -4.1774 -6.9561 -2.9313 35 1 -1.6273 -6.9119 -0.3850 36 1 -3.1519 -7.4787 -0.8057 37 1 2.8936 -4.3999 -1.2835 38 1 2.1813 -5.6513 -0.2320 39 1 2.7453 -3.4442 0.9376 40 1 1.0554 -3.9839 1.1174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776658607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:07 Heat of formation + Delta-G solvation = 22.382961 kcal Electronic energy + Delta-G solvation = -27410.122405 eV Core-core repulsion = 23422.062456 eV Total energy + Delta-G solvation = -3988.059950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.07003 -40.68447 -38.80212 -36.95779 -36.43418 -35.27434 -34.02744 -32.28238 -31.05716 -30.30061 -30.10116 -27.15591 -25.83200 -24.68797 -23.41957 -23.15855 -22.22506 -20.92314 -19.67348 -18.70604 -18.41223 -17.64834 -17.41859 -17.32439 -17.19485 -16.14140 -15.83944 -15.04974 -14.86978 -14.49947 -14.48095 -13.82317 -13.77083 -13.66672 -13.54473 -13.35834 -13.33521 -12.49383 -12.09723 -11.84269 -11.51172 -11.44513 -11.31200 -11.12195 -11.03455 -10.95428 -10.83630 -10.59978 -10.33349 -10.18785 -9.99248 -9.84507 -9.45185 -8.70526 -8.48517 -8.29904 -6.78991 -5.93599 -3.43932 -0.02404 0.56199 1.39888 1.51248 2.59148 3.04614 3.27585 3.29218 3.31258 3.37668 3.39087 4.15226 4.26094 4.37133 4.53967 4.63706 4.86707 5.15093 5.25233 5.29343 5.33879 5.46702 5.56867 5.64362 5.71282 5.79886 5.89913 6.00080 6.04500 6.20543 6.27511 6.46698 6.63025 6.73654 6.81270 7.07499 7.18312 7.38921 7.61335 7.67159 7.76577 8.19766 8.29147 9.03820 9.64232 10.21061 11.13664 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013122 B = 0.004175 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.347194 B = 6704.415240 C = 7870.504638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.005 3.995 3 Si 0.908 3.092 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.591 5.591 10 C 0.159 3.841 11 C 0.072 3.928 12 N -0.582 5.582 13 C 0.560 3.440 14 O -0.554 6.554 15 C -0.203 4.203 16 C 0.032 3.968 17 C -0.115 4.115 18 N 0.043 4.957 19 O -0.172 6.172 20 O -0.178 6.178 21 C 0.009 3.991 22 C -0.203 4.203 23 C 0.312 3.688 24 N -0.835 5.835 25 C 0.093 3.907 26 C 0.132 3.868 27 H 0.256 0.744 28 H 0.022 0.978 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.416 0.584 36 H 0.407 0.593 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.750 -13.508 -4.702 15.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.737 3.263 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.033 3.967 11 C -0.052 4.052 12 N -0.312 5.312 13 C 0.347 3.653 14 O -0.435 6.435 15 C -0.212 4.212 16 C 0.012 3.988 17 C -0.201 4.201 18 N 0.558 4.442 19 O -0.386 6.386 20 O -0.390 6.390 21 C -0.012 4.012 22 C -0.226 4.226 23 C 0.197 3.803 24 N -0.370 5.370 25 C -0.030 4.030 26 C 0.005 3.995 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.125 0.875 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.174 0.826 33 H 0.172 0.828 34 H 0.167 0.833 35 H 0.248 0.752 36 H 0.236 0.764 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.702 -14.092 -3.686 16.035 hybrid contribution 0.292 0.991 -0.038 1.034 sum -6.410 -13.101 -3.725 15.053 Atomic orbital electron populations 1.69928 1.05361 1.25724 1.54031 1.25181 0.95455 0.98613 1.00068 0.86141 0.79299 0.83449 0.77397 1.20119 1.21367 1.21571 1.19263 0.91011 0.83598 1.44705 0.91361 1.43986 1.30765 1.03720 1.52892 1.21318 0.88458 0.97421 0.89528 1.23034 0.98911 0.84924 0.98362 1.48067 1.28105 1.07706 1.47287 1.17848 0.81977 0.83578 0.81869 1.90751 1.67743 1.34211 1.50760 1.19262 0.95268 1.11089 0.95614 1.20888 0.98115 0.89607 0.90210 1.20566 0.98957 1.15934 0.84645 1.43438 1.00029 0.98095 1.02598 1.94552 1.15842 1.45993 1.82168 1.94496 1.33282 1.62435 1.48789 1.20787 0.94946 0.89498 0.95924 1.20525 0.99250 1.09701 0.93117 1.17910 0.91315 0.85532 0.85569 1.42758 1.23471 1.59826 1.10922 1.22333 0.85891 1.01171 0.93637 1.21306 0.98669 0.87132 0.92433 0.93395 0.95989 0.87487 0.91119 0.91143 0.82587 0.82786 0.83303 0.75179 0.76359 0.91385 0.89736 0.91267 0.95898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.90 10.95 55.49 0.61 -24.29 16 2 C 0.01 0.14 5.07 -17.43 -0.09 0.06 16 3 Si 0.91 20.77 29.57 -169.99 -5.03 15.75 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.26 -6.60 9.59 -15.06 -0.14 -6.75 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 N -0.59 -13.79 2.96 -171.77 -0.51 -14.30 16 10 C 0.16 3.51 5.50 -3.37 -0.02 3.49 16 11 C 0.07 1.25 5.56 -3.37 -0.02 1.23 16 12 N -0.58 -9.77 2.95 -173.48 -0.51 -10.28 16 13 C 0.56 8.88 6.58 -12.52 -0.08 8.80 16 14 O -0.55 -9.67 15.09 5.27 0.08 -9.59 16 15 C -0.20 -2.72 4.79 -104.80 -0.50 -3.22 16 16 C 0.03 0.43 7.06 -39.20 -0.28 0.15 16 17 C -0.11 -1.45 6.84 -79.98 -0.55 -2.00 16 18 N 0.04 0.64 4.45 33.94 0.15 0.79 16 19 O -0.17 -2.77 18.43 -29.46 -0.54 -3.31 16 20 O -0.18 -2.64 18.43 -29.46 -0.54 -3.18 16 21 C 0.01 0.09 9.54 -39.55 -0.38 -0.29 16 22 C -0.20 -1.73 9.88 -39.42 -0.39 -2.12 16 23 C 0.31 3.38 6.75 -83.61 -0.56 2.82 16 24 N -0.84 -7.58 8.87 32.55 0.29 -7.29 16 25 C 0.09 1.58 6.60 -3.60 -0.02 1.56 16 26 C 0.13 2.58 6.67 -3.60 -0.02 2.56 16 27 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.11 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.11 5.11 -51.93 -0.27 0.85 16 32 H 0.16 2.08 6.99 -52.49 -0.37 1.71 16 33 H 0.15 1.20 7.59 -52.49 -0.40 0.80 16 34 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 35 H 0.42 4.54 6.83 -40.82 -0.28 4.26 16 36 H 0.41 2.25 8.84 -40.82 -0.36 1.89 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.36 6.99 -51.93 -0.36 1.00 16 39 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 336.47 15.07 5.07 5.07 Total: -1.00 -30.75 336.47 -8.41 -39.16 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -4.41 Total: 5.22 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -3.06 Total: 6.27 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.03 Total: -55.38 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -1.01 Total: -16.09 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.75 -8.41 -39.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776658607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.540 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds