Wall clock time and date at job start Tue Mar 31 2020 05:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42098 * 108.57499 * 2 1 4 4 O 1.42099 * 108.57773 * 131.02486 * 2 1 3 5 5 C 1.81398 * 101.92258 * 245.51569 * 2 1 3 6 6 C 1.52997 * 109.46913 * 180.02562 * 5 2 1 7 7 C 1.50705 * 109.46893 * 180.02562 * 6 5 2 8 8 O 1.21284 * 120.00082 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00132 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00174 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.46130 * 34.96741 * 10 9 7 12 12 C 1.53042 * 109.46125 * 274.99798 * 10 9 7 13 13 C 1.53191 * 109.31249 * 178.61596 * 12 10 9 14 14 N 1.46924 * 108.77750 * 54.63272 * 13 12 10 15 15 C 1.36935 * 120.62826 * 126.41274 * 14 13 12 16 16 H 1.08004 * 119.99952 * 207.67199 * 15 14 13 17 17 C 1.38818 * 120.00090 * 27.66930 * 15 14 13 18 18 N 1.31612 * 119.99916 * 17.36890 * 17 15 14 19 19 Si 1.86804 * 119.99888 * 197.36605 * 17 15 14 20 20 H 1.48501 * 109.47049 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46937 * 120.00245 * 19 17 15 22 22 H 1.48500 * 109.46989 * 240.00128 * 19 17 15 23 23 C 1.46927 * 118.74187 * 306.39122 * 14 13 12 24 24 C 1.53040 * 109.46255 * 154.92764 * 10 9 7 25 25 H 1.09000 * 109.49418 * 61.43423 * 24 10 9 26 26 O 1.42904 * 109.49888 * 301.34100 * 24 10 9 27 27 H 1.08998 * 109.47172 * 174.48296 * 1 2 3 28 28 H 1.08997 * 109.47184 * 294.48294 * 1 2 3 29 29 H 1.09000 * 109.47346 * 54.48872 * 1 2 3 30 30 H 1.09002 * 109.46886 * 300.00272 * 5 2 1 31 31 H 1.08998 * 109.47199 * 59.99237 * 5 2 1 32 32 H 1.08998 * 109.47032 * 299.99625 * 6 5 2 33 33 H 1.08997 * 109.47386 * 60.00154 * 6 5 2 34 34 H 0.97001 * 119.99917 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.49623 * 298.56479 * 12 10 9 36 36 H 1.08999 * 109.49616 * 58.62950 * 12 10 9 37 37 H 1.08999 * 109.58084 * 174.42247 * 13 12 10 38 38 H 1.08996 * 109.58711 * 294.69914 * 13 12 10 39 39 H 0.97007 * 120.00197 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.58881 * 173.39480 * 23 14 13 41 41 H 1.08996 * 109.58228 * 293.82640 * 23 14 13 42 42 H 0.96699 * 114.00015 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 1.0162 5 6 2.1888 -0.7356 -1.6152 6 6 3.7055 -0.8194 -1.7978 7 6 4.0169 -1.4300 -3.1401 8 8 3.1144 -1.7654 -3.8777 9 7 5.2980 -1.6042 -3.5203 10 6 5.6007 -2.1982 -4.8248 11 1 4.8521 -1.8808 -5.5508 12 6 5.5819 -3.7239 -4.7070 13 6 5.8646 -4.3416 -6.0801 14 7 7.1258 -3.7916 -6.5954 15 6 8.1345 -4.6232 -7.0031 16 1 9.1612 -4.2915 -6.9532 17 6 7.8376 -5.8924 -7.4804 18 7 6.6123 -6.1811 -7.8643 19 14 9.1772 -7.1907 -7.5778 20 1 10.4575 -6.6184 -7.0893 21 1 8.8016 -8.3537 -6.7343 22 1 9.3373 -7.6320 -8.9866 23 6 7.2840 -2.3326 -6.6656 24 6 6.9853 -1.7375 -5.2860 25 1 7.7374 -2.0759 -4.5732 26 8 7.0112 -0.3109 -5.3661 27 1 -0.3633 -1.0229 -0.0988 28 1 -0.3633 0.4259 0.9352 29 1 -0.3634 0.5969 -0.8365 30 1 1.7611 -1.7368 -1.6665 31 1 1.7610 -0.1170 -2.4042 32 1 4.1335 0.1817 -1.7464 33 1 4.1328 -1.4383 -1.0089 34 1 6.0198 -1.3362 -2.9302 35 1 6.3472 -4.0437 -3.9997 36 1 4.6029 -4.0496 -4.3556 37 1 5.9504 -5.4239 -5.9831 38 1 5.0513 -4.0994 -6.7641 39 1 6.4048 -7.0679 -8.1982 40 1 8.3063 -2.0893 -6.9550 41 1 6.5876 -1.9245 -7.3981 42 1 7.8604 0.0516 -5.6534 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099892221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:50 Heat of formation + Delta-G solvation = -135.405472 kcal Electronic energy + Delta-G solvation = -25380.557696 eV Core-core repulsion = 21488.806727 eV Total energy + Delta-G solvation = -3891.750969 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.89954 -38.06523 -37.31052 -36.37004 -35.45059 -34.40583 -33.40132 -31.93366 -30.14310 -29.93509 -28.62007 -25.92961 -24.47974 -22.43217 -21.82191 -20.27429 -19.49845 -19.21332 -17.72391 -17.11674 -16.68583 -16.65307 -16.40731 -16.08357 -15.78993 -15.51097 -14.87913 -14.19836 -13.93949 -13.81916 -13.72886 -13.58775 -13.52850 -13.20642 -12.88480 -12.69501 -12.42161 -12.33514 -12.31740 -12.14591 -11.71909 -11.62210 -11.43839 -11.15570 -10.95777 -10.92242 -10.72006 -10.36740 -10.28969 -10.00094 -9.89463 -9.76271 -9.47211 -8.82012 -8.49976 -6.81795 -5.88771 -3.32809 -0.39861 2.35622 2.71162 3.09116 3.31517 3.39658 3.41440 3.44773 3.65854 4.14624 4.32811 4.37268 4.39127 4.47665 4.63144 4.76966 5.13440 5.21801 5.24262 5.25728 5.29051 5.43930 5.48970 5.50980 5.72950 5.92139 6.06267 6.25735 6.43834 6.47046 6.61305 6.72462 6.79996 7.24014 7.55881 7.65015 7.69703 7.87668 8.33079 8.34078 9.09209 9.71640 10.27222 11.19847 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.026348 B = 0.002561 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.457631 B =10929.678518 C =11418.301524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.422 3.578 3 O -0.940 6.940 4 O -0.940 6.940 5 C -0.593 4.593 6 C -0.134 4.134 7 C 0.519 3.481 8 O -0.540 6.540 9 N -0.715 5.715 10 C 0.162 3.838 11 H 0.088 0.912 12 C -0.147 4.147 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.259 4.259 16 H 0.068 0.932 17 C 0.005 3.995 18 N -0.899 5.899 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.289 1.289 23 C 0.121 3.879 24 C 0.080 3.920 25 H 0.057 0.943 26 O -0.571 6.571 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.398 0.602 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.024 0.976 39 H 0.255 0.745 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.498 12.271 14.410 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.604 3.396 3 O -0.937 6.937 4 O -0.937 6.937 5 C -0.722 4.722 6 C -0.176 4.176 7 C 0.303 3.697 8 O -0.417 6.417 9 N -0.364 5.364 10 C 0.058 3.942 11 H 0.106 0.894 12 C -0.187 4.187 13 C 0.045 3.955 14 N -0.312 5.312 15 C -0.389 4.389 16 H 0.085 0.915 17 C -0.194 4.194 18 N -0.542 5.542 19 Si 0.734 3.266 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.216 1.216 23 C -0.007 4.007 24 C 0.019 3.981 25 H 0.075 0.925 26 O -0.376 6.376 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.232 0.768 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.251 12.104 14.653 21.138 hybrid contribution 0.910 -0.850 -0.675 1.416 sum -8.341 11.254 13.977 19.789 Atomic orbital electron populations 1.30242 1.26589 1.11812 1.11793 1.07797 0.78454 0.75770 0.77597 1.93606 1.79072 1.34517 1.86536 1.93609 1.79062 1.66978 1.54052 1.30121 1.04103 1.15220 1.22766 1.21356 0.93346 1.04484 0.98366 1.20128 0.83136 0.78665 0.87766 1.90707 1.45561 1.50872 1.54592 1.46083 1.07048 1.63029 1.20237 1.21038 0.95937 0.93578 0.83666 0.89388 1.22610 1.01004 0.92868 1.02240 1.20824 0.86892 0.99603 0.88197 1.44055 1.15487 0.98749 1.72929 1.19201 0.87133 0.95457 1.37067 0.91455 1.25076 0.96586 0.99622 0.98164 1.70043 1.18856 1.20821 1.44529 0.86205 0.81289 0.81766 0.77367 1.20211 1.21441 1.21624 1.21529 0.99592 0.86827 0.92752 1.22779 0.96045 0.79811 0.99509 0.92516 1.86474 1.39211 1.20802 1.91105 0.85163 0.85261 0.85184 0.84127 0.84167 0.87285 0.87305 0.76831 0.92264 0.91942 0.88831 0.95833 0.93462 0.92110 0.95320 0.77912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.40 10.62 101.05 1.07 -1.33 16 2 S 2.42 16.59 5.36 -107.50 -0.58 16.01 16 3 O -0.94 -9.81 18.10 -57.83 -1.05 -10.86 16 4 O -0.94 -9.88 18.10 -57.83 -1.05 -10.92 16 5 C -0.59 -4.44 5.09 37.16 0.19 -4.25 16 6 C -0.13 -1.28 5.71 -27.88 -0.16 -1.44 16 7 C 0.52 7.30 7.79 -10.98 -0.09 7.22 16 8 O -0.54 -9.59 15.64 5.55 0.09 -9.50 16 9 N -0.71 -10.05 4.92 -53.76 -0.26 -10.32 16 10 C 0.16 2.82 2.12 -67.89 -0.14 2.67 16 11 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 12 C -0.15 -2.81 5.65 -26.61 -0.15 -2.96 16 13 C 0.17 4.02 5.31 -3.71 -0.02 4.00 16 14 N -0.59 -14.16 2.99 -172.32 -0.52 -14.68 16 15 C -0.26 -6.84 9.59 -15.06 -0.14 -6.98 16 16 H 0.07 1.73 7.89 -52.48 -0.41 1.31 16 17 C 0.00 0.13 4.91 -17.43 -0.09 0.04 16 18 N -0.90 -25.55 11.19 55.49 0.62 -24.93 16 19 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.12 2.40 6.14 -3.71 -0.02 2.38 16 24 C 0.08 1.31 3.14 -26.61 -0.08 1.23 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 O -0.57 -8.25 13.16 -35.23 -0.46 -8.71 16 27 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 30 H 0.14 0.94 8.10 -51.92 -0.42 0.52 16 31 H 0.14 0.93 8.10 -51.92 -0.42 0.51 16 32 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.40 4.50 8.60 -40.82 -0.35 4.15 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.09 2.45 6.04 -51.93 -0.31 2.13 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.37 3.84 9.08 45.56 0.41 4.26 16 LS Contribution 359.49 15.07 5.42 5.42 Total: -1.00 -37.88 359.49 -8.12 -46.00 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.67 Total: 5.87 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 0.37 Total: 0.58 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.16 Total: -49.93 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -2.47 Total: -39.99 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Atomic # 16 Polarization: 16.59 SS G_CDS: -0.58 Total: 16.01 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.88 -8.12 -46.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099892221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.401 kcal (2) G-P(sol) polarization free energy of solvation -37.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds