Wall clock time and date at job start Tue Mar 31 2020 05:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34779 * 120.00040 * 2 1 4 4 O 1.21593 * 119.99616 * 359.97438 * 3 2 1 5 5 N 1.34772 * 120.00077 * 179.97438 * 3 2 1 6 6 C 1.46509 * 119.99855 * 179.97438 * 5 3 2 7 7 H 1.09004 * 110.63685 * 31.86601 * 6 5 3 8 8 C 1.55154 * 110.87465 * 268.61252 * 6 5 3 9 9 C 1.55130 * 101.48467 * 205.90050 * 8 6 5 10 10 N 1.47423 * 104.72228 * 37.29432 * 9 8 6 11 11 S 1.65608 * 125.64573 * 155.81540 * 10 9 8 12 12 O 1.42098 * 106.39902 * 156.15223 * 11 10 9 13 13 O 1.42102 * 106.40068 * 23.23338 * 11 10 9 14 14 N 1.65600 * 107.21953 * 269.69338 * 11 10 9 15 15 C 1.46495 * 120.00100 * 270.00384 * 14 11 10 16 16 C 1.46500 * 119.99666 * 89.99709 * 14 11 10 17 17 C 1.50694 * 109.47517 * 265.00027 * 16 14 11 18 18 H 1.08002 * 120.00179 * 0.02562 * 17 16 14 19 19 C 1.37879 * 120.00472 * 180.02562 * 17 16 14 20 20 N 1.31514 * 119.99350 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 179.97438 * 19 17 16 22 22 H 1.48490 * 109.47339 * 179.97438 * 21 19 17 23 23 H 1.48493 * 109.47239 * 300.00306 * 21 19 17 24 24 H 1.48504 * 109.46636 * 59.99865 * 21 19 17 25 25 C 1.47021 * 108.70432 * 335.55637 * 10 9 8 26 26 H 1.08994 * 109.46699 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47123 * 300.00092 * 1 2 3 28 28 H 1.08999 * 109.46831 * 59.99782 * 1 2 3 29 29 H 0.96997 * 120.00097 * 179.97438 * 2 1 3 30 30 H 0.96997 * 120.00389 * 0.02562 * 5 3 2 31 31 H 1.09000 * 111.00665 * 324.14139 * 8 6 5 32 32 H 1.09000 * 111.00518 * 87.95135 * 8 6 5 33 33 H 1.08994 * 110.49310 * 278.45130 * 9 8 6 34 34 H 1.09001 * 110.34231 * 156.06239 * 9 8 6 35 35 H 1.09006 * 109.47078 * 270.00031 * 15 14 11 36 36 H 1.08997 * 109.47320 * 29.99838 * 15 14 11 37 37 H 1.08995 * 109.47441 * 149.99939 * 15 14 11 38 38 H 1.09005 * 109.46643 * 145.00559 * 16 14 11 39 39 H 1.08998 * 109.47481 * 25.00393 * 16 14 11 40 40 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 41 41 H 1.08996 * 109.88434 * 120.70196 * 25 10 9 42 42 H 1.09001 * 109.87944 * 241.71746 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.2192 2.4361 0.0000 7 1 3.6607 3.2023 0.5378 8 6 4.5265 2.8963 -1.4495 9 6 5.7911 3.7689 -1.2349 10 7 6.5545 3.0704 -0.1848 11 16 8.1877 3.1897 0.0623 12 8 8.4132 2.8512 1.4238 13 8 8.5903 4.4275 -0.5079 14 7 8.9080 2.0028 -0.8402 15 6 9.1368 0.6777 -0.2590 16 6 9.3165 2.2779 -2.2200 17 6 8.2283 1.8351 -3.1638 18 1 7.3228 1.3933 -2.7749 19 6 8.3887 1.9940 -4.5240 20 7 9.4911 2.5324 -4.9976 21 14 7.0402 1.4444 -5.6941 22 1 7.4542 1.7235 -7.0925 23 1 6.8043 -0.0122 -5.5284 24 1 5.7897 2.1859 -5.3912 25 6 5.6248 2.2551 0.6106 26 1 -0.3632 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.9500 -0.8400 0.0004 30 1 3.9717 0.3272 0.0005 31 1 4.7410 2.0432 -2.0932 32 1 3.7068 3.4909 -1.8528 33 1 5.5129 4.7682 -0.9005 34 1 6.3738 3.8242 -2.1544 35 1 10.1160 0.6548 0.2193 36 1 8.3655 0.4679 0.4821 37 1 9.0991 -0.0757 -1.0458 38 1 10.2342 1.7335 -2.4426 39 1 9.4897 3.3472 -2.3413 40 1 9.6041 2.6438 -5.9546 41 1 5.9175 1.2063 0.5629 42 1 5.6279 2.5940 1.6466 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341975786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:42 Heat of formation + Delta-G solvation = -123.085747 kcal Electronic energy + Delta-G solvation = -26516.111617 eV Core-core repulsion = 22657.187622 eV Total energy + Delta-G solvation = -3858.923995 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15391 -39.28365 -38.34534 -37.19704 -36.91721 -35.51665 -35.16841 -34.46249 -31.10688 -29.79806 -29.52799 -27.07062 -26.74867 -24.25480 -23.40791 -22.50330 -21.75945 -20.03141 -19.67800 -18.91769 -18.63351 -18.21144 -17.41981 -17.26048 -16.49740 -16.39362 -16.23948 -15.52221 -15.31841 -15.16669 -14.88045 -14.69551 -14.40589 -14.11583 -13.96164 -13.87792 -13.85146 -13.39324 -13.26536 -13.06675 -13.00030 -12.93922 -12.90827 -12.62315 -12.51786 -12.41980 -12.34902 -11.94229 -11.86992 -11.71699 -11.38458 -10.56091 -10.37526 -10.05191 -9.76530 -9.73325 -8.15149 -6.28623 -0.38476 1.44170 1.46194 1.52866 1.69091 2.00756 2.15371 2.43301 2.57401 3.16738 3.20785 3.36916 3.51100 3.81196 4.03763 4.15327 4.30280 4.35737 4.48607 4.55367 4.70461 4.71850 4.76756 4.79793 4.87628 4.95330 5.00323 5.07346 5.10787 5.15356 5.28788 5.37780 5.51367 5.52777 5.56351 5.76760 5.94803 6.02423 6.11619 6.83500 7.11669 7.41573 7.60351 8.93059 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.011267 B = 0.005128 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.503816 B = 5459.055381 C = 7044.448291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.739 5.739 3 C 0.699 3.301 4 O -0.635 6.635 5 N -0.724 5.724 6 C 0.166 3.834 7 H 0.101 0.899 8 C -0.131 4.131 9 C 0.120 3.880 10 N -1.013 6.013 11 S 2.815 3.185 12 O -0.999 6.999 13 O -1.011 7.011 14 N -1.001 6.001 15 C 0.098 3.902 16 C 0.258 3.742 17 C -0.536 4.536 18 H 0.075 0.925 19 C 0.013 3.987 20 N -0.930 5.930 21 Si 0.955 3.045 22 H -0.292 1.292 23 H -0.265 1.265 24 H -0.265 1.265 25 C 0.116 3.884 26 H 0.112 0.888 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.415 0.585 30 H 0.413 0.587 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.020 0.980 39 H 0.016 0.984 40 H 0.264 0.736 41 H 0.088 0.912 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.429 -9.496 10.386 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.395 5.395 3 C 0.398 3.602 4 O -0.517 6.517 5 N -0.380 5.380 6 C 0.059 3.941 7 H 0.119 0.881 8 C -0.172 4.172 9 C -0.005 4.005 10 N -0.854 5.854 11 S 2.825 3.175 12 O -0.983 6.983 13 O -0.996 6.996 14 N -0.843 5.843 15 C -0.047 4.047 16 C 0.134 3.866 17 C -0.575 4.575 18 H 0.093 0.907 19 C -0.187 4.187 20 N -0.570 5.570 21 Si 0.780 3.220 22 H -0.218 1.218 23 H -0.189 1.189 24 H -0.190 1.190 25 C -0.010 4.010 26 H 0.130 0.870 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.251 0.749 30 H 0.250 0.750 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.038 0.962 39 H 0.034 0.966 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.349 -7.893 10.825 19.631 hybrid contribution 0.171 -0.902 -1.346 1.629 sum -14.178 -8.795 9.479 19.189 Atomic orbital electron populations 1.21519 0.77363 1.03987 1.01146 1.44858 1.08305 1.06868 1.79489 1.16167 0.81994 0.84587 0.77445 1.90906 1.68783 1.32197 1.59787 1.44870 1.04227 1.09501 1.79370 1.21631 0.90689 0.86124 0.95696 0.88137 1.23150 0.96454 1.00248 0.97332 1.22040 0.92444 0.95750 0.90283 1.58810 1.23866 1.59367 1.43338 1.00706 0.71998 0.72764 0.72043 1.93521 1.85221 1.85305 1.34243 1.93530 1.81641 1.44402 1.80016 1.57607 1.74552 1.26477 1.25631 1.21476 1.01428 0.83457 0.98364 1.18776 0.95626 0.95838 0.76357 1.21767 1.03736 1.40678 0.91288 0.90653 1.25780 0.97672 0.95125 1.00085 1.70065 1.27862 1.45002 1.14066 0.85652 0.79624 0.79258 0.77458 1.21787 1.18932 1.18989 1.21972 0.87770 0.96239 0.94982 0.86992 0.93351 0.93776 0.74887 0.74965 0.90494 0.89630 0.90450 0.91531 0.92735 0.90132 0.90591 0.96197 0.96593 0.92668 0.89420 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.27 10.70 127.77 1.37 2.64 16 2 N -0.74 -10.46 5.72 -500.19 -2.86 -13.32 16 3 C 0.70 15.58 8.57 179.06 1.53 17.11 16 4 O -0.64 -20.13 15.99 -4.01 -0.06 -20.20 16 5 N -0.72 -13.36 5.19 -452.12 -2.35 -15.70 16 6 C 0.17 3.78 3.31 46.18 0.15 3.93 16 7 H 0.10 2.46 7.55 -2.39 -0.02 2.45 16 8 C -0.13 -3.50 6.79 32.06 0.22 -3.28 16 9 C 0.12 3.80 6.99 86.93 0.61 4.41 16 10 N -1.01 -31.98 3.75 -506.03 -1.90 -33.88 16 11 S 2.82 109.42 6.31 -56.49 -0.36 109.06 16 12 O -1.00 -38.60 16.79 -128.00 -2.15 -40.75 16 13 O -1.01 -47.84 16.27 -128.00 -2.08 -49.93 16 14 N -1.00 -39.80 3.23 -543.25 -1.75 -41.55 16 15 C 0.10 3.03 10.31 127.77 1.32 4.35 16 16 C 0.26 12.74 5.41 85.63 0.46 13.20 16 17 C -0.54 -26.77 9.38 25.60 0.24 -26.53 16 18 H 0.08 3.49 7.81 -2.91 -0.02 3.47 16 19 C 0.01 0.67 5.46 84.66 0.46 1.13 16 20 N -0.93 -53.13 13.29 21.45 0.28 -52.85 16 21 Si 0.95 40.73 29.54 68.60 2.03 42.76 16 22 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 25 C 0.12 2.71 6.74 86.73 0.58 3.29 16 26 H 0.11 0.50 8.14 -2.39 -0.02 0.49 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.42 2.98 8.84 -92.71 -0.82 2.16 16 30 H 0.41 5.07 8.38 -92.71 -0.78 4.30 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.08 2.00 7.79 -2.39 -0.02 1.98 16 37 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 38 H 0.02 1.04 8.11 -2.38 -0.02 1.02 16 39 H 0.02 0.90 6.91 -2.39 -0.02 0.88 16 40 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 41 H 0.09 1.66 7.72 -2.39 -0.02 1.64 16 42 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -75.23 363.82 -4.81 -80.04 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -0.55 Total: 16.08 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 6.95 Total: 20.24 kcal Atomic # 7 Polarization: -148.73 SS G_CDS: -8.57 Total: -157.30 kcal Atomic # 8 Polarization: -106.58 SS G_CDS: -4.30 Total: -110.87 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Atomic # 16 Polarization: 109.42 SS G_CDS: -0.36 Total: 109.06 kcal Total: -75.23 -4.81 -80.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341975786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.050 kcal (2) G-P(sol) polarization free energy of solvation -75.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds