Wall clock time and date at job start Tue Mar 31 2020 05:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47208 * 2 1 4 4 C 1.53002 * 109.47367 * 239.99666 * 2 1 3 5 5 N 1.46493 * 109.47016 * 185.00286 * 4 2 1 6 6 C 1.34778 * 119.99952 * 179.97438 * 5 4 2 7 7 O 1.21631 * 119.99746 * 5.06111 * 6 5 4 8 8 C 1.47164 * 120.00212 * 184.78018 * 6 5 4 9 9 C 1.38397 * 126.88471 * 90.30628 * 8 6 5 10 10 C 1.50701 * 127.32012 * 359.97438 * 9 8 6 11 11 F 1.39896 * 109.47148 * 180.02562 * 10 9 8 12 12 F 1.39906 * 109.47191 * 300.00046 * 10 9 8 13 13 F 1.39901 * 109.47325 * 60.00205 * 10 9 8 14 14 C 1.39673 * 105.36147 * 179.86185 * 9 8 6 15 15 N 1.30873 * 107.86063 * 0.40331 * 14 9 8 16 16 N 1.28443 * 110.92300 * 359.74429 * 15 14 9 17 17 C 1.46505 * 125.18810 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.46631 * 119.99787 * 2 1 3 19 19 C 1.36935 * 120.00466 * 274.99666 * 18 2 1 20 20 H 1.08004 * 119.99688 * 0.02562 * 19 18 2 21 21 C 1.38813 * 120.00251 * 180.02562 * 19 18 2 22 22 N 1.31621 * 119.99515 * 180.02562 * 21 19 18 23 23 Si 1.86790 * 119.99983 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47076 * 89.99891 * 23 21 19 25 25 H 1.48503 * 109.47070 * 209.99855 * 23 21 19 26 26 H 1.48500 * 109.47247 * 329.99926 * 23 21 19 27 27 H 1.09006 * 109.46756 * 59.99954 * 1 2 3 28 28 H 1.08993 * 109.47208 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47352 * 300.00559 * 1 2 3 30 30 H 1.08997 * 109.46546 * 65.00150 * 4 2 1 31 31 H 1.09000 * 109.46869 * 305.00462 * 4 2 1 32 32 H 0.97001 * 120.00563 * 0.02562 * 5 4 2 33 33 H 1.08002 * 126.07333 * 180.16978 * 14 9 8 34 34 H 1.09001 * 109.46975 * 274.94065 * 17 16 15 35 35 H 1.08994 * 109.46954 * 34.94744 * 17 16 15 36 36 H 1.09001 * 109.46935 * 154.94813 * 17 16 15 37 37 H 0.97006 * 120.00016 * 95.00282 * 18 2 1 38 38 H 0.97002 * 119.99474 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1904 6 6 4.1731 -1.4293 -2.1905 7 8 3.5794 -1.8038 -3.1838 8 6 5.6272 -1.6289 -2.0833 9 6 6.2777 -2.7277 -1.5497 10 6 5.6494 -3.9638 -0.9594 11 9 6.6538 -4.8382 -0.5307 12 9 4.8481 -3.6049 0.1298 13 9 4.8631 -4.5956 -1.9288 14 6 7.6404 -2.4488 -1.6770 15 7 7.7586 -1.2709 -2.2349 16 7 6.6052 -0.7641 -2.4852 17 6 6.3740 0.5420 -3.1074 18 7 2.0182 -0.6906 1.1962 19 6 2.1491 -0.0075 2.3758 20 1 1.8919 1.0404 2.4244 21 6 2.6122 -0.6618 3.5091 22 7 2.7374 -0.0052 4.6430 23 14 3.0576 -2.4738 3.4249 24 1 4.4904 -2.6150 3.0611 25 1 2.8184 -3.1043 4.7480 26 1 2.2181 -3.1428 2.3988 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.7517 -0.1584 -2.1369 31 1 1.6054 -1.7198 -1.2951 32 1 3.9824 -0.4629 -0.4314 33 1 8.4524 -3.0896 -1.3665 34 1 6.3963 1.3180 -2.3423 35 1 7.1528 0.7361 -3.8448 36 1 5.4006 0.5434 -3.5979 37 1 2.2489 -1.6318 1.1527 38 1 3.0606 -0.4625 5.4350 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752916708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:07 Heat of formation + Delta-G solvation = -112.635887 kcal Electronic energy + Delta-G solvation = -28412.561455 eV Core-core repulsion = 23876.789909 eV Total energy + Delta-G solvation = -4535.771546 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.25201 -48.77800 -48.75901 -43.94749 -40.79373 -38.13307 -35.41005 -34.96806 -33.91140 -32.80888 -31.18731 -29.12956 -27.53288 -26.76883 -25.41507 -23.90506 -22.75416 -21.88088 -21.34265 -20.09299 -19.62602 -19.53515 -19.34900 -18.34162 -17.80864 -17.20548 -16.97118 -16.77105 -16.05520 -15.91438 -15.63589 -15.58023 -15.45669 -15.18573 -14.92603 -14.91668 -14.77866 -14.55305 -14.45748 -14.02388 -13.91016 -13.80184 -13.52280 -13.36985 -13.29561 -12.88588 -12.50605 -12.26488 -12.15179 -11.81179 -11.77305 -11.53890 -11.02414 -10.68169 -10.52248 -10.33264 -9.35183 -8.02080 -5.34500 0.01657 0.69013 1.12324 1.24036 1.37260 1.41332 1.43553 1.62321 1.97998 2.46771 2.60370 2.78327 3.20362 3.27104 3.31682 3.48173 3.56817 3.81062 3.85586 4.17110 4.20607 4.25799 4.30940 4.50075 4.57959 4.68108 4.77270 4.92346 5.01811 5.12730 5.24639 5.34189 5.54327 5.80624 6.14093 6.22010 6.58981 6.72647 7.08094 7.83845 8.00054 9.18940 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.005738 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.590226 B = 4878.865436 C = 5792.204924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.162 3.838 3 H 0.069 0.931 4 C 0.117 3.883 5 N -0.691 5.691 6 C 0.583 3.417 7 O -0.541 6.541 8 C 0.030 3.970 9 C -0.287 4.287 10 C 0.541 3.459 11 F -0.165 7.165 12 F -0.185 7.185 13 F -0.179 7.179 14 C 0.063 3.937 15 N -0.279 5.279 16 N -0.252 5.252 17 C 0.069 3.931 18 N -0.751 5.751 19 C -0.217 4.217 20 H 0.069 0.931 21 C -0.051 4.051 22 N -0.979 5.979 23 Si 0.930 3.070 24 H -0.277 1.277 25 H -0.302 1.302 26 H -0.261 1.261 27 H 0.080 0.920 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.414 0.586 33 H 0.228 0.772 34 H 0.113 0.887 35 H 0.128 0.872 36 H 0.104 0.896 37 H 0.362 0.638 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.967 -1.715 -18.117 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 H 0.087 0.913 4 C -0.007 4.007 5 N -0.342 5.342 6 C 0.365 3.635 7 O -0.418 6.418 8 C -0.104 4.104 9 C -0.300 4.300 10 C 0.485 3.515 11 F -0.146 7.146 12 F -0.166 7.166 13 F -0.161 7.161 14 C -0.114 4.114 15 N -0.109 5.109 16 N -0.037 5.037 17 C -0.069 4.069 18 N -0.395 5.395 19 C -0.348 4.348 20 H 0.087 0.913 21 C -0.243 4.243 22 N -0.630 5.630 23 Si 0.759 3.241 24 H -0.203 1.203 25 H -0.229 1.229 26 H -0.186 1.186 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.250 0.750 33 H 0.244 0.756 34 H 0.132 0.868 35 H 0.146 0.854 36 H 0.123 0.877 37 H 0.195 0.805 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.270 -0.836 -19.131 20.859 hybrid contribution -0.287 -1.881 1.477 2.408 sum 7.983 -2.716 -17.655 19.565 Atomic orbital electron populations 1.22223 0.96037 1.01673 1.01759 1.20708 0.93965 0.95994 0.83866 0.91348 1.21900 0.77665 1.01762 0.99346 1.46027 1.09118 1.56323 1.22729 1.16988 0.84185 0.78748 0.83574 1.90860 1.69067 1.50746 1.31079 1.21294 0.91562 0.93235 1.04353 1.20646 0.96768 0.96990 1.15567 1.17307 0.75946 0.82731 0.75511 1.93180 1.60187 1.71100 1.90171 1.93266 1.75054 1.91852 1.56461 1.93228 1.75706 1.83892 1.63239 1.23888 0.94509 0.93689 0.99344 1.73311 1.06983 1.11599 1.18968 1.46161 1.00977 1.15868 1.40672 1.22813 1.06154 0.77365 1.00579 1.42905 1.79924 1.09469 1.07185 1.18992 1.34324 0.94571 0.86935 0.91326 1.25237 1.02767 1.00803 0.95518 1.69838 1.54867 1.37188 1.01059 0.85792 0.78995 0.82769 0.76550 1.20307 1.22897 1.18642 0.90101 0.93256 0.93936 0.87827 0.91655 0.74978 0.75591 0.86831 0.85357 0.87726 0.80523 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 9.49 71.98 0.68 -3.81 16 2 C 0.16 5.09 3.05 44.99 0.14 5.22 16 3 H 0.07 2.12 8.08 -2.39 -0.02 2.10 16 4 C 0.12 3.11 5.24 86.38 0.45 3.56 16 5 N -0.69 -19.25 5.38 -466.64 -2.51 -21.76 16 6 C 0.58 16.88 6.83 86.59 0.59 17.47 16 7 O -0.54 -18.09 17.12 -4.13 -0.07 -18.16 16 8 C 0.03 0.80 6.71 40.78 0.27 1.07 16 9 C -0.29 -7.85 5.70 -19.48 -0.11 -7.96 16 10 C 0.54 16.07 3.36 71.24 0.24 16.31 16 11 F -0.17 -4.37 16.93 44.97 0.76 -3.61 16 12 F -0.18 -6.42 17.30 44.97 0.78 -5.64 16 13 F -0.18 -5.61 17.30 44.97 0.78 -4.83 16 14 C 0.06 1.40 11.53 85.18 0.98 2.39 16 15 N -0.28 -6.33 11.90 -57.13 -0.68 -7.01 16 16 N -0.25 -5.48 3.75 -356.02 -1.33 -6.82 16 17 C 0.07 0.85 11.22 127.77 1.43 2.29 16 18 N -0.75 -31.29 4.36 -322.94 -1.41 -32.70 16 19 C -0.22 -11.32 10.41 84.03 0.87 -10.45 16 20 H 0.07 3.87 8.06 -2.91 -0.02 3.85 16 21 C -0.05 -2.90 5.50 84.86 0.47 -2.43 16 22 N -0.98 -60.65 13.97 21.65 0.30 -60.35 16 23 Si 0.93 45.37 27.74 68.60 1.90 47.28 16 24 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 25 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 26 H -0.26 -11.93 6.52 99.48 0.65 -11.28 16 27 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.41 12.05 8.12 -92.71 -0.75 11.30 16 33 H 0.23 3.45 8.06 -2.91 -0.02 3.43 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 1.21 7.65 -2.39 -0.02 1.20 16 37 H 0.36 15.46 5.66 -92.70 -0.52 14.93 16 38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -70.66 346.44 4.33 -66.32 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -0.21 Total: 23.63 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: 6.02 Total: 23.66 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -5.63 Total: -128.64 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.07 Total: -18.16 kcal Atomic # 9 Polarization: -16.40 SS G_CDS: 2.32 Total: -14.09 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.90 Total: 47.28 kcal Total: -70.66 4.33 -66.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752916708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.311 kcal (2) G-P(sol) polarization free energy of solvation -70.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds