Wall clock time and date at job start Tue Mar 31 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 109.47249 * 2 1 4 4 C 1.35648 * 116.99967 * 180.02562 * 3 2 1 5 5 C 1.38711 * 120.15541 * 0.23353 * 4 3 2 6 6 C 1.38055 * 120.08697 * 180.27892 * 5 4 3 7 7 C 1.38543 * 120.38948 * 359.74343 * 6 5 4 8 8 C 1.37789 * 120.30233 * 359.97438 * 7 6 5 9 9 C 1.39708 * 119.90770 * 0.02562 * 8 7 6 10 10 C 1.47531 * 120.19427 * 179.97438 * 9 8 7 11 11 O 1.21586 * 120.00183 * 179.97438 * 10 9 8 12 12 N 1.34782 * 120.00124 * 359.97438 * 10 9 8 13 13 C 1.46496 * 120.00086 * 179.72754 * 12 10 9 14 14 H 1.08993 * 110.88656 * 31.12254 * 13 12 10 15 15 C 1.54905 * 111.00193 * 267.19428 * 13 12 10 16 16 N 1.47433 * 104.82903 * 204.91741 * 15 13 12 17 17 C 1.36941 * 125.64654 * 204.14904 * 16 15 13 18 18 H 1.08005 * 119.99975 * 354.85283 * 17 16 15 19 19 C 1.38803 * 119.99719 * 174.84757 * 17 16 15 20 20 N 1.31622 * 120.00493 * 7.06227 * 19 17 16 21 21 Si 1.86809 * 119.99885 * 187.06256 * 19 17 16 22 22 H 1.48496 * 109.46978 * 94.98857 * 21 19 17 23 23 H 1.48496 * 109.47026 * 214.98843 * 21 19 17 24 24 H 1.48494 * 109.47059 * 334.98969 * 21 19 17 25 25 C 1.47018 * 108.70470 * 24.13226 * 16 15 13 26 26 C 1.54326 * 107.27061 * 358.93959 * 25 16 15 27 27 H 1.09005 * 110.71994 * 219.44375 * 26 25 16 28 28 O 1.42896 * 110.87277 * 96.24090 * 26 25 16 29 29 H 1.09003 * 109.47170 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46687 * 299.99615 * 1 2 3 31 31 H 1.08995 * 109.47470 * 59.99756 * 1 2 3 32 32 H 1.09002 * 109.47270 * 239.99928 * 2 1 3 33 33 H 1.08995 * 109.47470 * 120.00244 * 2 1 3 34 34 H 1.08000 * 119.95502 * 0.04054 * 5 4 3 35 35 H 1.07999 * 119.80054 * 179.75893 * 6 5 4 36 36 H 1.08001 * 119.84997 * 179.97438 * 7 6 5 37 37 H 1.08003 * 120.04967 * 179.97438 * 8 7 6 38 38 H 0.97006 * 119.99313 * 359.97438 * 12 10 9 39 39 H 1.08995 * 110.37072 * 323.75527 * 15 13 12 40 40 H 1.09002 * 110.36830 * 86.08095 * 15 13 12 41 41 H 0.96992 * 119.99994 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.88197 * 239.52143 * 25 16 15 43 43 H 1.08993 * 110.01374 * 118.42651 * 25 16 15 44 44 H 0.96700 * 114.00072 * 66.39370 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5250 -0.0005 5 6 4.1990 0.4272 -0.0060 6 6 5.5675 0.6097 -0.0007 7 6 6.1042 1.8869 0.0047 8 6 5.2768 2.9887 0.0043 9 6 3.8902 2.8186 -0.0010 10 6 2.9984 3.9939 -0.0009 11 8 1.7921 3.8418 -0.0060 12 7 3.5209 5.2363 0.0048 13 6 2.6355 6.4034 -0.0011 14 1 1.7018 6.1854 0.5173 15 6 2.3682 6.8901 -1.4472 16 7 2.0293 8.3182 -1.3081 17 6 1.2866 9.0522 -2.1941 18 1 0.9648 8.6099 -3.1254 19 6 0.9474 10.3645 -1.8951 20 7 1.4530 10.9486 -0.8294 21 14 -0.2268 11.3018 -3.0053 22 1 -1.6070 11.1958 -2.4678 23 1 0.1756 12.7302 -3.0578 24 1 -0.1824 10.7244 -4.3726 25 6 2.6205 8.8237 -0.0606 26 6 3.3401 7.6392 0.6183 27 1 3.1930 7.6661 1.6980 28 8 4.7331 7.6395 0.2995 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.7881 -0.5715 -0.0104 35 1 6.2234 -0.2483 -0.0010 36 1 7.1760 2.0195 0.0092 37 1 5.6997 3.9826 0.0089 38 1 4.4834 5.3576 0.0092 39 1 3.2621 6.7702 -2.0592 40 1 1.5325 6.3427 -1.8834 41 1 1.2161 11.8658 -0.6208 42 1 1.8364 9.2050 0.5934 43 1 3.3366 9.6153 -0.2810 44 1 5.2197 8.3917 0.6634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084014209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:54 Heat of formation + Delta-G solvation = -61.510616 kcal Electronic energy + Delta-G solvation = -27101.108262 eV Core-core repulsion = 23212.950757 eV Total energy + Delta-G solvation = -3888.157505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.61446 -39.16177 -37.82413 -37.35085 -34.80126 -33.86871 -32.18434 -31.87071 -30.98541 -29.70484 -28.37632 -26.98128 -24.64108 -24.30767 -23.34477 -21.79295 -20.68862 -20.35819 -19.80193 -18.60092 -17.49651 -16.89544 -16.74682 -16.27132 -16.04310 -15.15667 -15.05930 -14.82835 -14.64953 -14.50340 -13.94085 -13.68984 -13.51918 -13.33232 -13.05484 -12.75613 -12.65434 -12.53730 -12.20257 -12.15148 -12.04649 -11.77095 -11.25874 -11.19943 -10.93408 -10.90246 -10.82753 -10.46659 -10.40379 -10.08324 -9.79516 -9.51760 -9.26043 -9.23899 -8.61964 -8.56060 -8.33416 -6.83206 -5.72877 -3.04302 0.76571 1.22180 3.01818 3.03594 3.40857 3.44086 3.48392 3.50364 3.84577 4.48274 4.53186 4.55281 4.67044 4.72796 4.82813 4.86603 5.01475 5.06148 5.17627 5.24748 5.36108 5.42629 5.52131 5.54815 5.63994 5.64880 5.78132 5.90791 5.93828 6.01038 6.05817 6.16799 6.23586 6.28378 6.50680 6.70096 6.73794 7.02189 7.27872 7.37433 7.48157 7.76739 7.94730 8.11399 8.23362 8.62178 9.21140 9.81528 10.46853 11.39821 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017254 B = 0.003122 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.421401 B = 8966.184111 C =10116.557359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.277 6.277 4 C 0.186 3.814 5 C -0.224 4.224 6 C -0.057 4.057 7 C -0.169 4.169 8 C -0.046 4.046 9 C -0.166 4.166 10 C 0.553 3.447 11 O -0.522 6.522 12 N -0.707 5.707 13 C 0.141 3.859 14 H 0.105 0.895 15 C 0.131 3.869 16 N -0.601 5.601 17 C -0.224 4.224 18 H 0.080 0.920 19 C -0.009 4.009 20 N -0.925 5.925 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.154 3.846 26 C 0.068 3.932 27 H 0.060 0.940 28 O -0.568 6.568 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.404 0.596 39 H 0.025 0.975 40 H 0.044 0.956 41 H 0.252 0.748 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.205 -21.638 5.462 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.188 6.188 4 C 0.137 3.863 5 C -0.243 4.243 6 C -0.076 4.076 7 C -0.188 4.188 8 C -0.065 4.065 9 C -0.170 4.170 10 C 0.340 3.660 11 O -0.399 6.399 12 N -0.360 5.360 13 C 0.035 3.965 14 H 0.123 0.877 15 C 0.004 3.996 16 N -0.328 5.328 17 C -0.352 4.352 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.573 5.573 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.028 3.972 26 C 0.008 3.992 27 H 0.078 0.922 28 O -0.374 6.374 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.240 0.760 39 H 0.043 0.957 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 7.883 -21.917 5.127 23.849 hybrid contribution 0.188 0.934 -0.269 0.990 sum 8.071 -20.983 4.858 23.000 Atomic orbital electron populations 1.21739 0.92469 1.02389 1.04192 1.22871 0.96490 0.82308 1.00982 1.86416 1.17689 1.28253 1.86421 1.19035 0.83203 0.92619 0.91437 1.21225 0.94387 0.97922 1.10768 1.21088 0.94232 0.97481 0.94768 1.20979 1.00124 0.92153 1.05506 1.21269 0.91262 0.99740 0.94197 1.19483 0.93699 0.91506 1.12346 1.17998 0.87935 0.82816 0.77246 1.90822 1.14300 1.85815 1.48919 1.45672 1.10791 1.04724 1.74764 1.22320 0.93070 0.82310 0.98780 0.87680 1.21844 0.97969 0.86506 0.93291 1.44284 1.61164 1.04104 1.23201 1.19105 1.24173 0.93843 0.98095 0.90260 1.24802 1.00528 0.96952 0.98162 1.69928 1.46682 1.12807 1.27852 0.86077 0.80936 0.79017 0.79661 1.21569 1.21807 1.20603 1.21854 0.96225 0.91202 0.87879 1.23517 0.81346 0.97037 0.97304 0.92179 1.86238 1.20511 1.50891 1.79790 0.90630 0.91296 0.91203 0.92134 0.92179 0.85035 0.85508 0.85308 0.84698 0.76005 0.95708 0.93724 0.93761 0.92531 0.93124 0.77353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.15 0.38 -0.97 16 2 C 0.05 0.47 5.46 37.15 0.20 0.68 16 3 O -0.28 -4.04 8.21 -40.52 -0.33 -4.38 16 4 C 0.19 2.51 6.70 -38.69 -0.26 2.25 16 5 C -0.22 -2.25 9.03 -39.47 -0.36 -2.60 16 6 C -0.06 -0.49 10.03 -39.54 -0.40 -0.89 16 7 C -0.17 -1.53 10.02 -39.63 -0.40 -1.93 16 8 C -0.05 -0.51 9.54 -39.20 -0.37 -0.89 16 9 C -0.17 -2.39 5.89 -104.84 -0.62 -3.01 16 10 C 0.55 9.76 7.76 -12.47 -0.10 9.67 16 11 O -0.52 -11.09 14.80 -16.59 -0.25 -11.34 16 12 N -0.71 -11.81 5.12 -52.77 -0.27 -12.08 16 13 C 0.14 2.76 3.31 -65.78 -0.22 2.54 16 14 H 0.11 2.21 7.53 -51.93 -0.39 1.82 16 15 C 0.13 3.00 6.92 -2.53 -0.02 2.98 16 16 N -0.60 -15.84 3.39 -170.08 -0.58 -16.42 16 17 C -0.22 -6.43 10.27 -15.06 -0.15 -6.59 16 18 H 0.08 2.23 7.84 -52.48 -0.41 1.81 16 19 C -0.01 -0.25 5.48 -17.43 -0.10 -0.34 16 20 N -0.92 -27.07 10.36 55.49 0.57 -26.50 16 21 Si 0.91 22.48 29.56 -169.99 -5.02 17.46 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 25 C 0.15 3.68 5.15 -3.07 -0.02 3.66 16 26 C 0.07 1.26 4.19 -24.89 -0.10 1.15 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 O -0.57 -9.16 12.15 -35.23 -0.43 -9.58 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.49 7.65 -51.93 -0.40 0.09 16 33 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 34 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.14 1.29 6.40 -52.48 -0.34 0.96 16 38 H 0.40 5.88 5.62 -40.82 -0.23 5.65 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.06 1.48 7.30 -51.93 -0.38 1.11 16 43 H 0.05 1.31 7.54 -51.93 -0.39 0.92 16 44 H 0.38 4.70 9.12 45.56 0.42 5.11 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -35.11 361.18 -8.74 -43.86 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.37 Total: 7.82 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -2.52 Total: 5.72 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.27 Total: -55.00 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -1.01 Total: -25.30 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.11 -8.74 -43.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084014209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.655 kcal (2) G-P(sol) polarization free energy of solvation -35.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds