Wall clock time and date at job start Tue Mar 31 2020 05:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35708 * 116.99685 * 2 1 4 4 C 1.39000 * 119.90707 * 179.97438 * 3 2 1 5 5 C 1.37705 * 120.08542 * 179.97438 * 4 3 2 6 6 C 1.39740 * 119.90972 * 0.02562 * 5 4 3 7 7 C 1.47609 * 120.08316 * 179.97438 * 6 5 4 8 8 O 1.21586 * 120.00058 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99456 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99590 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.44819 * 34.96473 * 10 9 7 12 12 C 1.53037 * 109.45962 * 274.99644 * 10 9 7 13 13 C 1.53190 * 109.31429 * 178.61888 * 12 10 9 14 14 N 1.46921 * 108.89538 * 54.55783 * 13 12 10 15 15 C 1.36940 * 120.62853 * 126.46323 * 14 13 12 16 16 H 1.08000 * 119.99751 * 331.91759 * 15 14 13 17 17 C 1.38810 * 120.00078 * 151.91671 * 15 14 13 18 18 N 1.31619 * 119.99689 * 343.17980 * 17 15 14 19 19 Si 1.86795 * 119.99988 * 163.18147 * 17 15 14 20 20 H 1.48499 * 109.47320 * 89.99982 * 19 17 15 21 21 H 1.48500 * 109.47299 * 209.99808 * 19 17 15 22 22 H 1.48507 * 109.47261 * 329.99989 * 19 17 15 23 23 C 1.46956 * 118.71898 * 306.65229 * 14 13 12 24 24 C 1.53045 * 109.46000 * 154.92965 * 10 9 7 25 25 H 1.09001 * 109.49694 * 61.43066 * 24 10 9 26 26 O 1.42902 * 109.49674 * 301.37112 * 24 10 9 27 27 C 1.39727 * 119.82433 * 0.27655 * 6 5 4 28 28 C 1.37705 * 119.91269 * 359.46121 * 27 6 5 29 29 H 1.09007 * 109.47046 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47497 * 300.00424 * 1 2 3 31 31 H 1.09003 * 109.46657 * 60.00851 * 1 2 3 32 32 H 1.07997 * 119.96108 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.04298 * 179.97438 * 5 4 3 34 34 H 0.97002 * 120.00166 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.49829 * 58.66150 * 12 10 9 36 36 H 1.09003 * 109.49424 * 298.56885 * 12 10 9 37 37 H 1.09003 * 109.58892 * 174.42567 * 13 12 10 38 38 H 1.09006 * 109.58383 * 294.70368 * 13 12 10 39 39 H 0.97000 * 119.99637 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.46418 * 293.56461 * 23 14 13 41 41 H 1.09004 * 109.60020 * 173.21602 * 23 14 13 42 42 H 0.96695 * 114.00164 * 179.97438 * 26 24 10 43 43 H 1.08007 * 120.04470 * 179.70505 * 27 6 5 44 44 H 1.07995 * 119.95813 * 180.25631 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4333 1.2798 0.0005 5 6 4.0622 2.5048 0.0000 6 6 3.3029 3.6779 -0.0005 7 6 3.9730 4.9931 -0.0005 8 8 5.1872 5.0567 -0.0005 9 7 3.2389 6.1233 -0.0005 10 6 3.9040 7.4287 -0.0011 11 1 4.8191 7.3695 -0.5904 12 6 4.2480 7.8263 1.4361 13 6 4.9740 9.1752 1.4288 14 7 4.1474 10.1564 0.7128 15 6 3.8139 11.3481 1.2992 16 1 3.7396 11.4187 2.3743 17 6 3.5714 12.4653 0.5119 18 7 3.9725 12.4866 -0.7415 19 14 2.6759 13.9383 1.2312 20 1 3.6627 14.8771 1.8229 21 1 1.9175 14.6293 0.1576 22 1 1.7354 13.4797 2.2851 23 6 3.6822 9.8325 -0.6430 24 6 2.9707 8.4763 -0.6125 25 1 2.0660 8.5536 -0.0095 26 8 2.6249 8.0881 -1.9436 27 6 1.9076 3.6026 0.0053 28 6 1.2862 2.3737 0.0004 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 4.0194 0.3727 0.0005 33 1 5.1408 2.5588 0.0008 34 1 2.2702 6.0725 -0.0009 35 1 4.8939 7.0679 1.8787 36 1 3.3312 7.9097 2.0198 37 1 5.1333 9.5101 2.4538 38 1 5.9350 9.0702 0.9252 39 1 3.8034 13.2675 -1.2916 40 1 4.5367 9.7817 -1.3179 41 1 2.9891 10.6011 -0.9852 42 1 2.0336 8.7074 -2.3928 43 1 1.3173 4.5070 0.0097 44 1 0.2079 2.3146 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090752281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:00 Heat of formation + Delta-G solvation = -72.211015 kcal Electronic energy + Delta-G solvation = -26817.964426 eV Core-core repulsion = 22929.342918 eV Total energy + Delta-G solvation = -3888.621509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.62720 -39.63760 -38.09348 -37.03252 -35.27352 -34.38371 -32.35861 -31.37707 -30.65486 -29.32764 -28.83394 -27.70797 -25.24156 -23.60731 -22.82801 -22.29428 -21.63106 -20.24148 -19.54140 -18.62759 -17.62581 -16.79144 -16.72856 -16.50426 -16.14187 -15.63911 -15.17452 -14.84266 -14.65981 -14.31132 -14.03973 -13.82748 -13.68437 -13.52554 -13.32682 -12.95702 -12.82026 -12.58472 -12.23093 -12.19333 -11.98746 -11.68008 -11.38468 -11.21796 -11.14946 -10.84038 -10.77715 -10.40827 -10.22828 -10.02797 -9.88982 -9.54124 -9.35650 -9.34465 -8.79380 -8.56823 -8.44166 -6.77981 -5.88023 -3.31709 0.75392 1.07164 2.86267 2.89211 3.31332 3.37552 3.39429 3.41156 3.77624 4.38855 4.40347 4.54001 4.57432 4.69671 4.74327 4.82301 4.99487 5.06611 5.14554 5.28885 5.35444 5.40096 5.46192 5.60112 5.68099 5.85451 5.90892 5.97556 6.00931 6.08468 6.17749 6.23095 6.38725 6.45296 6.48703 6.70908 6.85502 6.91560 6.98592 7.11421 7.44729 7.70805 7.75797 8.08790 8.35372 8.44144 9.10489 9.73317 10.29893 11.20597 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026744 B = 0.002560 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.695643 B =10934.152461 C =11283.650639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.147 3.853 4 C -0.161 4.161 5 C -0.021 4.021 6 C -0.166 4.166 7 C 0.558 3.442 8 O -0.543 6.543 9 N -0.711 5.711 10 C 0.162 3.838 11 H 0.089 0.911 12 C -0.139 4.139 13 C 0.145 3.855 14 N -0.589 5.589 15 C -0.255 4.255 16 H 0.068 0.932 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.149 3.851 24 C 0.072 3.928 25 H 0.051 0.949 26 O -0.573 6.573 27 C -0.044 4.044 28 C -0.217 4.217 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.395 0.605 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.024 0.976 39 H 0.255 0.745 40 H 0.030 0.970 41 H 0.093 0.907 42 H 0.376 0.624 43 H 0.130 0.870 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.965 -21.497 0.632 23.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.101 3.899 4 C -0.180 4.180 5 C -0.040 4.040 6 C -0.169 4.169 7 C 0.345 3.655 8 O -0.422 6.422 9 N -0.360 5.360 10 C 0.059 3.941 11 H 0.107 0.893 12 C -0.180 4.180 13 C 0.018 3.982 14 N -0.313 5.313 15 C -0.385 4.385 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.733 3.267 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.204 1.204 23 C 0.021 3.979 24 C 0.011 3.989 25 H 0.069 0.931 26 O -0.377 6.377 27 C -0.063 4.063 28 C -0.236 4.236 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.162 0.838 34 H 0.229 0.771 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.111 0.889 42 H 0.222 0.778 43 H 0.148 0.852 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.649 -21.981 0.656 23.283 hybrid contribution -1.663 1.442 0.134 2.205 sum -9.312 -20.539 0.790 22.565 Atomic orbital electron populations 1.23117 0.78062 1.04147 1.01667 1.86041 1.21702 1.26978 1.88094 1.19293 0.92444 0.84155 0.94031 1.20408 0.91200 0.98735 1.07607 1.21115 1.00855 0.89903 0.92136 1.19985 0.93586 0.94044 1.09320 1.18111 0.86999 0.83880 0.76466 1.90768 1.13462 1.87473 1.50472 1.46019 1.09923 1.05892 1.74190 1.21012 0.96388 0.79815 0.96931 0.89285 1.22417 1.01225 0.99397 0.94915 1.20939 0.92631 0.87716 0.96911 1.44000 1.56857 1.16170 1.14289 1.19186 1.41644 0.86021 0.91629 0.91416 1.25090 1.00643 0.97296 0.96603 1.70027 1.47387 1.29681 1.07500 0.86287 0.79680 0.82619 0.78127 1.21255 1.21524 1.20450 1.21415 0.97850 0.91423 0.87171 1.22979 0.97051 0.96533 0.82345 0.93098 1.86422 1.70733 1.51949 1.28603 1.21126 0.93466 0.97504 0.94166 1.21153 1.00268 0.92021 1.10126 0.88091 0.92379 0.92356 0.84540 0.83827 0.77068 0.91710 0.92044 0.92105 0.95791 0.93481 0.95183 0.88859 0.77771 0.85240 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.84 10.48 -18.83 -0.20 -3.04 16 3 C 0.15 1.47 6.70 -39.02 -0.26 1.21 16 4 C -0.16 -1.66 9.97 -39.49 -0.39 -2.05 16 5 C -0.02 -0.25 9.58 -39.22 -0.38 -0.63 16 6 C -0.17 -2.16 5.88 -104.96 -0.62 -2.77 16 7 C 0.56 9.02 7.73 -12.44 -0.10 8.93 16 8 O -0.54 -10.66 16.00 5.29 0.08 -10.57 16 9 N -0.71 -10.93 4.87 -54.78 -0.27 -11.20 16 10 C 0.16 2.96 2.12 -67.89 -0.14 2.82 16 11 H 0.09 1.88 7.57 -51.93 -0.39 1.48 16 12 C -0.14 -2.53 5.65 -26.61 -0.15 -2.68 16 13 C 0.14 3.06 6.51 -3.71 -0.02 3.04 16 14 N -0.59 -14.38 3.00 -172.30 -0.52 -14.90 16 15 C -0.26 -6.79 9.58 -15.06 -0.14 -6.93 16 16 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 17 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 18 N -0.90 -25.43 11.20 55.49 0.62 -24.81 16 19 Si 0.90 20.99 29.59 -169.99 -5.03 15.96 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.15 3.41 4.93 -3.70 -0.02 3.40 16 24 C 0.07 1.33 3.14 -26.61 -0.08 1.25 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 O -0.57 -9.71 13.16 -35.23 -0.46 -10.17 16 27 C -0.04 -0.46 9.53 -39.22 -0.37 -0.83 16 28 C -0.22 -1.99 9.01 -39.50 -0.36 -2.35 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 31 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.14 1.69 7.64 -52.49 -0.40 1.29 16 34 H 0.39 5.06 6.62 -40.82 -0.27 4.79 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 42 H 0.38 5.06 9.08 45.56 0.41 5.48 16 43 H 0.13 1.12 6.40 -52.48 -0.34 0.78 16 44 H 0.13 0.88 6.28 -52.49 -0.33 0.55 16 LS Contribution 360.68 15.07 5.44 5.44 Total: -1.00 -32.74 360.68 -7.81 -40.55 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.35 Total: 9.26 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -2.13 Total: 3.48 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.16 Total: -50.91 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.58 Total: -23.79 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.74 -7.81 -40.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090752281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.657 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds