Wall clock time and date at job start Tue Mar 31 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35708 * 116.99685 * 2 1 4 4 C 1.39000 * 119.90707 * 179.97438 * 3 2 1 5 5 C 1.37705 * 120.08542 * 179.97438 * 4 3 2 6 6 C 1.39740 * 119.90972 * 0.02562 * 5 4 3 7 7 C 1.47609 * 120.08316 * 179.97438 * 6 5 4 8 8 O 1.21586 * 120.00058 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99456 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99590 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.44819 * 34.96473 * 10 9 7 12 12 C 1.53037 * 109.45962 * 274.99644 * 10 9 7 13 13 C 1.53190 * 109.31429 * 178.61888 * 12 10 9 14 14 N 1.46921 * 108.89538 * 54.55783 * 13 12 10 15 15 C 1.36940 * 120.62853 * 126.46323 * 14 13 12 16 16 H 1.08000 * 119.99751 * 331.91759 * 15 14 13 17 17 C 1.38810 * 120.00078 * 151.91671 * 15 14 13 18 18 N 1.31619 * 119.99689 * 343.17980 * 17 15 14 19 19 Si 1.86795 * 119.99988 * 163.18147 * 17 15 14 20 20 H 1.48499 * 109.47320 * 89.99982 * 19 17 15 21 21 H 1.48500 * 109.47299 * 209.99808 * 19 17 15 22 22 H 1.48507 * 109.47261 * 329.99989 * 19 17 15 23 23 C 1.46956 * 118.71898 * 306.65229 * 14 13 12 24 24 C 1.53045 * 109.46000 * 154.92965 * 10 9 7 25 25 H 1.09001 * 109.49694 * 61.43066 * 24 10 9 26 26 O 1.42902 * 109.49674 * 301.37112 * 24 10 9 27 27 C 1.39727 * 119.82433 * 0.27655 * 6 5 4 28 28 C 1.37705 * 119.91269 * 359.46121 * 27 6 5 29 29 H 1.09007 * 109.47046 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47497 * 300.00424 * 1 2 3 31 31 H 1.09003 * 109.46657 * 60.00851 * 1 2 3 32 32 H 1.07997 * 119.96108 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.04298 * 179.97438 * 5 4 3 34 34 H 0.97002 * 120.00166 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.49829 * 58.66150 * 12 10 9 36 36 H 1.09003 * 109.49424 * 298.56885 * 12 10 9 37 37 H 1.09003 * 109.58892 * 174.42567 * 13 12 10 38 38 H 1.09006 * 109.58383 * 294.70368 * 13 12 10 39 39 H 0.97000 * 119.99637 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.46418 * 293.56461 * 23 14 13 41 41 H 1.09004 * 109.60020 * 173.21602 * 23 14 13 42 42 H 0.96695 * 114.00164 * 179.97438 * 26 24 10 43 43 H 1.08007 * 120.04470 * 179.70505 * 27 6 5 44 44 H 1.07995 * 119.95813 * 180.25631 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4333 1.2798 0.0005 5 6 4.0622 2.5048 0.0000 6 6 3.3029 3.6779 -0.0005 7 6 3.9730 4.9931 -0.0005 8 8 5.1872 5.0567 -0.0005 9 7 3.2389 6.1233 -0.0005 10 6 3.9040 7.4287 -0.0011 11 1 4.8191 7.3695 -0.5904 12 6 4.2480 7.8263 1.4361 13 6 4.9740 9.1752 1.4288 14 7 4.1474 10.1564 0.7128 15 6 3.8139 11.3481 1.2992 16 1 3.7396 11.4187 2.3743 17 6 3.5714 12.4653 0.5119 18 7 3.9725 12.4866 -0.7415 19 14 2.6759 13.9383 1.2312 20 1 3.6627 14.8771 1.8229 21 1 1.9175 14.6293 0.1576 22 1 1.7354 13.4797 2.2851 23 6 3.6822 9.8325 -0.6430 24 6 2.9707 8.4763 -0.6125 25 1 2.0660 8.5536 -0.0095 26 8 2.6249 8.0881 -1.9436 27 6 1.9076 3.6026 0.0053 28 6 1.2862 2.3737 0.0004 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 4.0194 0.3727 0.0005 33 1 5.1408 2.5588 0.0008 34 1 2.2702 6.0725 -0.0009 35 1 4.8939 7.0679 1.8787 36 1 3.3312 7.9097 2.0198 37 1 5.1333 9.5101 2.4538 38 1 5.9350 9.0702 0.9252 39 1 3.8034 13.2675 -1.2916 40 1 4.5367 9.7817 -1.3179 41 1 2.9891 10.6011 -0.9852 42 1 2.0336 8.7074 -2.3928 43 1 1.3173 4.5070 0.0097 44 1 0.2079 2.3146 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090752281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:59 Heat of formation + Delta-G solvation = -96.479183 kcal Electronic energy + Delta-G solvation = -26819.016773 eV Core-core repulsion = 22929.342918 eV Total energy + Delta-G solvation = -3889.673855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.56441 -40.73675 -39.48310 -37.97866 -36.89694 -35.87271 -34.05217 -32.35057 -31.70801 -30.83647 -30.40431 -28.30655 -26.98858 -24.78378 -23.98393 -23.68322 -23.01635 -21.48989 -21.09797 -19.48244 -18.95738 -18.31296 -18.12272 -17.66974 -16.92806 -16.70567 -16.52009 -16.12213 -15.95495 -15.64183 -15.51920 -15.06455 -15.05180 -14.67231 -14.50212 -14.30846 -13.87828 -13.66904 -13.66471 -13.42267 -13.35648 -13.04666 -12.79852 -12.65570 -12.53660 -12.11964 -12.03321 -12.00910 -11.88617 -11.82925 -11.42778 -11.05661 -10.88693 -10.60743 -10.12675 -10.11408 -9.28874 -8.76135 -7.90960 -5.38501 -0.13819 0.29828 1.48643 1.50212 1.60055 1.83316 2.11143 2.28812 2.49763 2.82523 3.10616 3.26909 3.61853 3.69954 3.73437 3.85903 3.93024 4.05187 4.17073 4.30039 4.30888 4.40766 4.43243 4.44530 4.45764 4.57167 4.69242 4.77444 4.87380 4.91900 4.95550 5.03682 5.07672 5.15372 5.20467 5.31560 5.35057 5.45050 5.55949 5.60922 5.63784 6.33254 6.33484 6.55449 6.82619 7.09847 7.22156 7.77026 8.30628 9.16069 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026744 B = 0.002560 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.695643 B =10934.152461 C =11283.650639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C 0.150 3.850 4 C -0.167 4.167 5 C -0.031 4.031 6 C -0.190 4.190 7 C 0.557 3.443 8 O -0.587 6.587 9 N -0.699 5.699 10 C 0.169 3.831 11 H 0.055 0.945 12 C -0.123 4.123 13 C 0.142 3.858 14 N -0.604 5.604 15 C -0.266 4.266 16 H 0.073 0.927 17 C -0.049 4.049 18 N -0.935 5.935 19 Si 0.971 3.029 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.267 1.267 23 C 0.157 3.843 24 C 0.093 3.907 25 H 0.069 0.931 26 O -0.573 6.573 27 C -0.038 4.038 28 C -0.212 4.212 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.150 0.850 33 H 0.134 0.866 34 H 0.410 0.590 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.008 0.992 39 H 0.252 0.748 40 H -0.006 1.006 41 H 0.072 0.928 42 H 0.392 0.608 43 H 0.150 0.850 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.995 -23.120 1.552 26.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.240 6.240 3 C 0.104 3.896 4 C -0.185 4.185 5 C -0.050 4.050 6 C -0.193 4.193 7 C 0.346 3.654 8 O -0.469 6.469 9 N -0.350 5.350 10 C 0.064 3.936 11 H 0.073 0.927 12 C -0.163 4.163 13 C 0.016 3.984 14 N -0.329 5.329 15 C -0.395 4.395 16 H 0.090 0.910 17 C -0.244 4.244 18 N -0.581 5.581 19 Si 0.798 3.202 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.191 1.191 23 C 0.030 3.970 24 C 0.032 3.968 25 H 0.087 0.913 26 O -0.380 6.380 27 C -0.057 4.057 28 C -0.230 4.230 29 H 0.138 0.862 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.168 0.832 33 H 0.152 0.848 34 H 0.248 0.752 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.026 0.974 39 H 0.061 0.939 40 H 0.012 0.988 41 H 0.090 0.910 42 H 0.242 0.758 43 H 0.167 0.833 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.728 -23.636 1.582 26.005 hybrid contribution -0.730 1.816 -0.185 1.966 sum -11.458 -21.820 1.397 24.685 Atomic orbital electron populations 1.23458 0.75901 1.05952 1.02756 1.86041 1.23941 1.26437 1.87594 1.19450 0.92444 0.85001 0.92753 1.20536 0.91996 0.98518 1.07460 1.21105 1.00595 0.90483 0.92775 1.19791 0.94824 0.92250 1.12474 1.18631 0.86565 0.84974 0.75214 1.90741 1.15492 1.88134 1.52570 1.45764 1.10621 1.04598 1.73997 1.20682 0.95252 0.81287 0.96345 0.92703 1.22205 1.01497 0.97441 0.95141 1.21033 0.92033 0.88742 0.96638 1.44248 1.57622 1.16378 1.14660 1.19538 1.41053 0.86891 0.92052 0.90961 1.25861 1.01585 0.99972 0.96986 1.70189 1.48796 1.30309 1.08804 0.85238 0.78399 0.79114 0.77424 1.21463 1.21750 1.19130 1.21227 0.96307 0.93457 0.86020 1.22546 0.96945 0.93835 0.83477 0.91313 1.86403 1.71284 1.52357 1.27972 1.21322 0.92285 0.98986 0.93084 1.21458 1.01801 0.91006 1.08753 0.86169 0.91180 0.91252 0.83196 0.84822 0.75200 0.91202 0.90508 0.91403 0.97434 0.93900 0.98807 0.90968 0.75817 0.83252 0.81791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.33 -4.94 10.48 -90.28 -0.95 -5.89 16 3 C 0.15 2.61 6.70 22.63 0.15 2.76 16 4 C -0.17 -3.23 9.97 22.33 0.22 -3.00 16 5 C -0.03 -0.72 9.58 22.51 0.22 -0.51 16 6 C -0.19 -4.76 5.88 -20.08 -0.12 -4.88 16 7 C 0.56 17.94 7.73 86.72 0.67 18.61 16 8 O -0.59 -23.82 16.00 -3.99 -0.06 -23.88 16 9 N -0.70 -20.75 4.87 -445.49 -2.17 -22.92 16 10 C 0.17 6.16 2.12 45.02 0.10 6.26 16 11 H 0.05 2.40 7.57 -2.39 -0.02 2.38 16 12 C -0.12 -4.40 5.65 30.67 0.17 -4.22 16 13 C 0.14 6.06 6.51 86.36 0.56 6.63 16 14 N -0.60 -29.93 3.00 -699.03 -2.10 -32.03 16 15 C -0.27 -14.15 9.58 84.03 0.81 -13.34 16 16 H 0.07 3.72 7.88 -2.91 -0.02 3.69 16 17 C -0.05 -2.62 4.92 84.86 0.42 -2.20 16 18 N -0.94 -53.95 11.20 21.65 0.24 -53.71 16 19 Si 0.97 43.17 29.59 68.60 2.03 45.20 16 20 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 C 0.16 7.40 4.93 86.35 0.43 7.82 16 24 C 0.09 3.39 3.14 30.67 0.10 3.49 16 25 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 26 O -0.57 -18.86 13.16 -148.98 -1.96 -20.82 16 27 C -0.04 -0.69 9.53 22.50 0.21 -0.48 16 28 C -0.21 -3.16 9.01 22.32 0.20 -2.96 16 29 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.07 0.32 7.65 -2.39 -0.02 0.30 16 31 H 0.07 0.33 7.65 -2.39 -0.02 0.31 16 32 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.13 3.31 7.64 -2.91 -0.02 3.29 16 34 H 0.41 9.49 6.62 -92.71 -0.61 8.88 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.07 2.76 7.93 -2.39 -0.02 2.74 16 38 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 39 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 40 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 41 H 0.07 3.70 6.07 -2.38 -0.01 3.69 16 42 H 0.39 10.05 9.08 -74.06 -0.67 9.38 16 43 H 0.15 2.03 6.40 -2.91 -0.02 2.01 16 44 H 0.16 1.38 6.28 -2.91 -0.02 1.36 16 Total: -1.00 -72.54 360.68 0.03 -72.50 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -0.25 Total: 26.36 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 5.24 Total: 15.17 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -4.02 Total: -108.66 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -2.97 Total: -50.59 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -72.54 0.03 -72.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090752281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.975 kcal (2) G-P(sol) polarization free energy of solvation -72.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds