Wall clock time and date at job start Tue Mar 31 2020 04:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47433 * 2 1 4 4 H 1.09003 * 109.46834 * 55.00034 * 3 2 1 5 5 N 1.46501 * 109.47092 * 295.00217 * 3 2 1 6 6 C 1.34777 * 119.99784 * 85.00000 * 5 3 2 7 7 O 1.21279 * 120.00185 * 359.97438 * 6 5 3 8 8 C 1.50703 * 119.99528 * 179.97438 * 6 5 3 9 9 C 1.50704 * 109.46807 * 179.97438 * 8 6 5 10 10 C 1.38304 * 119.93002 * 269.72538 * 9 8 6 11 11 C 1.38101 * 120.06830 * 179.72620 * 10 9 8 12 12 C 1.38882 * 119.92894 * 0.56755 * 11 10 9 13 13 O 1.35753 * 120.07108 * 179.68162 * 12 11 10 14 14 C 1.34825 * 117.00229 * 174.48990 * 13 12 11 15 15 H 1.08007 * 120.00062 * 5.05993 * 14 13 12 16 16 C 1.38647 * 119.99967 * 185.05805 * 14 13 12 17 17 N 1.31558 * 120.00286 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99864 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46794 * 89.99993 * 18 16 14 20 20 H 1.48499 * 109.47353 * 209.99891 * 18 16 14 21 21 H 1.48493 * 109.47313 * 330.00155 * 18 16 14 22 22 C 1.38878 * 119.86047 * 359.70942 * 12 11 10 23 23 C 1.38098 * 119.93332 * 359.97438 * 22 12 11 24 24 C 1.50698 * 109.47135 * 175.00045 * 3 2 1 25 25 O 1.21284 * 119.99839 * 119.99964 * 24 3 2 26 26 N 1.34779 * 120.00128 * 300.00258 * 24 3 2 27 27 C 1.46496 * 120.00130 * 179.97438 * 26 24 3 28 28 H 1.09002 * 109.46871 * 299.99890 * 1 2 3 29 29 H 1.09006 * 109.47169 * 59.99615 * 1 2 3 30 30 H 1.08995 * 109.47581 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46871 * 240.00110 * 2 1 3 32 32 H 1.09001 * 109.46758 * 120.00579 * 2 1 3 33 33 H 0.96999 * 119.99936 * 264.99427 * 5 3 2 34 34 H 1.08996 * 109.47000 * 299.99995 * 8 6 5 35 35 H 1.08997 * 109.47368 * 59.99871 * 8 6 5 36 36 H 1.07994 * 119.96258 * 359.97438 * 10 9 8 37 37 H 1.07993 * 120.03572 * 180.27577 * 11 10 9 38 38 H 0.96999 * 120.00030 * 180.02562 * 17 16 14 39 39 H 1.08004 * 120.03313 * 179.97438 * 22 12 11 40 40 H 1.08003 * 119.96570 * 180.02562 * 23 22 12 41 41 H 0.97002 * 119.99548 * 0.02562 * 26 24 3 42 42 H 1.09003 * 109.47153 * 60.00038 * 27 26 24 43 43 H 1.09004 * 109.47213 * 180.02562 * 27 26 24 44 44 H 1.09003 * 109.47289 * 300.00017 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6525 2.0975 -1.2518 6 6 0.4352 2.6645 -1.3668 7 8 -0.3395 2.6320 -0.4343 8 6 0.0368 3.3388 -2.6544 9 6 -1.3612 3.8861 -2.5230 10 6 -2.4451 3.1019 -2.8738 11 6 -3.7276 3.5986 -2.7493 12 6 -3.9278 4.8912 -2.2823 13 8 -5.1871 5.3846 -2.1648 14 6 -5.3174 6.6015 -1.5991 15 1 -4.4386 7.1726 -1.3381 16 6 -6.5795 7.1197 -1.3525 17 7 -7.6499 6.4244 -1.6710 18 14 -6.7601 8.8055 -0.5681 19 1 -6.8136 9.8423 -1.6299 20 1 -8.0119 8.8488 0.2296 21 1 -5.5983 9.0654 0.3195 22 6 -2.8371 5.6781 -1.9363 23 6 -1.5573 5.1733 -2.0569 24 6 3.5420 1.4442 0.1238 25 8 4.2217 1.9434 -0.7478 26 7 4.1298 0.8910 1.2031 27 6 5.5898 0.8921 1.3232 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2720 2.1232 -1.9977 34 1 0.7282 4.1542 -2.8665 35 1 0.0681 2.6148 -3.4685 36 1 -2.2884 2.0988 -3.2418 37 1 -4.5738 2.9843 -3.0191 38 1 -8.5329 6.7871 -1.4988 39 1 -2.9895 6.6838 -1.5733 40 1 -0.7087 5.7847 -1.7876 41 1 3.5861 0.4913 1.9000 42 1 5.9536 1.9197 1.3230 43 1 5.8782 0.4044 2.2544 44 1 6.0241 0.3528 0.4814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411441663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:28 Heat of formation + Delta-G solvation = -78.780727 kcal Electronic energy + Delta-G solvation = -26227.116919 eV Core-core repulsion = 22338.210526 eV Total energy + Delta-G solvation = -3888.906393 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.73111 -39.46464 -38.69896 -36.55920 -35.39786 -35.14650 -32.73227 -32.28285 -31.06028 -30.08745 -28.80473 -26.84596 -25.72025 -24.90423 -22.40614 -21.90785 -21.25662 -20.53814 -20.10753 -18.22783 -17.92050 -17.05387 -16.87429 -16.33599 -15.99423 -15.50402 -15.30211 -14.73062 -14.51934 -14.33663 -14.13568 -13.86877 -13.65894 -13.48397 -13.27432 -13.26251 -12.77043 -12.66275 -12.61810 -12.41434 -12.24654 -11.78268 -11.69448 -11.44982 -11.21552 -11.07892 -10.79359 -10.70798 -10.56120 -10.38724 -10.27112 -9.68488 -9.63719 -9.26666 -9.13269 -8.77118 -8.08559 -7.10224 -6.39700 -3.98119 2.14614 2.28073 2.31759 2.58774 2.81392 3.15654 3.17238 3.22137 3.30487 4.01427 4.18278 4.58596 4.61395 4.73409 4.76931 4.96586 5.04388 5.11764 5.14483 5.27847 5.32461 5.33380 5.39403 5.46375 5.52998 5.74188 5.77295 5.80396 5.86539 5.91236 5.94336 6.26337 6.28028 6.34880 6.48413 6.76787 6.94003 6.97929 7.11521 7.30110 7.43788 7.48338 7.51960 7.69861 7.90418 8.05788 8.33669 9.06171 9.77233 10.78501 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023216 B = 0.002330 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.771460 B =12013.797893 C =12302.821035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.128 3.872 4 H 0.115 0.885 5 N -0.723 5.723 6 C 0.513 3.487 7 O -0.514 6.514 8 C -0.079 4.079 9 C -0.168 4.168 10 C -0.059 4.059 11 C -0.191 4.191 12 C 0.156 3.844 13 O -0.179 6.179 14 C -0.390 4.390 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.940 3.060 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.232 4.232 23 C -0.056 4.056 24 C 0.512 3.488 25 O -0.534 6.534 26 N -0.732 5.732 27 C 0.087 3.913 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.407 0.593 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.269 0.731 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.405 0.595 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.274 -12.674 4.241 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C 0.019 3.981 4 H 0.132 0.868 5 N -0.379 5.379 6 C 0.300 3.700 7 O -0.388 6.388 8 C -0.119 4.119 9 C -0.169 4.169 10 C -0.078 4.078 11 C -0.211 4.211 12 C 0.103 3.897 13 O -0.082 6.082 14 C -0.466 4.466 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.499 5.499 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.251 4.251 23 C -0.074 4.074 24 C 0.297 3.703 25 O -0.410 6.410 26 N -0.384 5.384 27 C -0.057 4.057 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.243 0.757 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.079 0.921 39 H 0.144 0.856 40 H 0.121 0.879 41 H 0.239 0.761 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 22.719 -12.373 4.245 26.216 hybrid contribution 0.137 0.667 0.534 0.865 sum 22.856 -11.706 4.779 26.121 Atomic orbital electron populations 1.21819 0.93379 1.01116 1.04047 1.21918 0.98371 0.93783 1.02465 1.20807 0.90369 0.95900 0.91043 0.86780 1.45859 1.17621 1.58978 1.15445 1.21029 0.80483 0.77669 0.90795 1.90750 1.50603 1.57164 1.40300 1.20399 0.96463 1.00478 0.94567 1.18619 0.92252 0.95619 1.10439 1.20387 0.91543 0.97648 0.98173 1.20147 0.96837 0.94506 1.09574 1.19383 0.85697 0.92137 0.92510 1.83975 1.21476 1.33804 1.68992 1.21320 0.93961 0.91542 1.39796 0.89111 1.25280 0.94210 0.99860 0.97237 1.70041 0.97992 1.37373 1.44501 0.85720 0.78353 0.80404 0.78998 1.19921 1.20292 1.19223 1.21101 0.92179 1.01669 1.10195 1.20512 0.95961 0.94390 0.96587 1.20786 0.90462 0.77331 0.81710 1.90707 1.65398 1.44813 1.40102 1.45748 1.08445 1.60813 1.23426 1.21571 0.79463 1.02530 1.02147 0.91696 0.91711 0.93132 0.91331 0.91090 0.75673 0.88884 0.88912 0.87420 0.86600 0.92099 0.85644 0.87854 0.76099 0.92055 0.90433 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.51 37.16 0.32 -1.22 16 2 C -0.13 -1.00 5.55 -26.73 -0.15 -1.15 16 3 C 0.13 1.20 2.67 -69.08 -0.18 1.01 16 4 H 0.11 1.17 7.58 -51.93 -0.39 0.78 16 5 N -0.72 -7.73 4.90 -54.93 -0.27 -8.00 16 6 C 0.51 6.94 6.39 -10.98 -0.07 6.87 16 7 O -0.51 -8.87 13.17 5.56 0.07 -8.79 16 8 C -0.08 -1.02 5.83 -29.03 -0.17 -1.18 16 9 C -0.17 -2.94 4.38 -104.57 -0.46 -3.40 16 10 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 11 C -0.19 -4.20 9.99 -39.39 -0.39 -4.60 16 12 C 0.16 3.92 6.65 -39.11 -0.26 3.66 16 13 O -0.18 -5.25 9.76 0.05 0.00 -5.25 16 14 C -0.39 -11.18 9.49 30.88 0.29 -10.88 16 15 H 0.09 2.42 5.20 -52.48 -0.27 2.15 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.81 13.67 55.48 0.76 -25.05 16 18 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 C -0.23 -5.27 9.17 -39.40 -0.36 -5.63 16 23 C -0.06 -1.08 9.69 -39.61 -0.38 -1.47 16 24 C 0.51 4.74 7.22 -10.99 -0.08 4.66 16 25 O -0.53 -6.71 15.84 5.55 0.09 -6.62 16 26 N -0.73 -4.39 5.57 -67.08 -0.37 -4.76 16 27 C 0.09 0.43 10.70 59.84 0.64 1.07 16 28 H 0.06 0.77 7.85 -51.93 -0.41 0.36 16 29 H 0.06 0.83 5.64 -51.93 -0.29 0.54 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.38 7.43 -51.93 -0.39 0.00 16 33 H 0.41 3.90 7.79 -40.82 -0.32 3.58 16 34 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16 35 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.13 2.85 5.64 -52.48 -0.30 2.55 16 40 H 0.10 1.73 8.06 -52.48 -0.42 1.30 16 41 H 0.40 1.36 8.19 -40.82 -0.33 1.02 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 369.89 15.07 5.57 5.57 Total: -1.00 -35.80 369.89 -6.97 -42.77 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.06 Total: 6.92 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -1.74 Total: -12.77 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.12 Total: -37.81 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.16 Total: -20.67 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.80 -6.97 -42.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411441663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.010 kcal (2) G-P(sol) polarization free energy of solvation -35.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds