Wall clock time and date at job start Tue Mar 31 2020 04:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48497 * 109.46927 * 269.72894 * 3 2 1 5 5 H 1.48506 * 109.46836 * 29.72533 * 3 2 1 6 6 H 1.48490 * 109.47352 * 149.72429 * 3 2 1 7 7 C 1.38812 * 120.00058 * 179.72630 * 2 1 3 8 8 H 1.08005 * 119.99682 * 163.08295 * 7 2 1 9 9 N 1.36931 * 119.99878 * 343.08256 * 7 2 1 10 10 C 1.47149 * 120.98475 * 333.77989 * 9 7 2 11 11 C 1.53296 * 108.38694 * 230.50998 * 10 9 7 12 12 O 1.42963 * 109.22250 * 307.69880 * 11 10 9 13 13 C 1.42963 * 114.16656 * 62.57904 * 12 11 10 14 14 H 1.08998 * 109.51527 * 57.39264 * 13 12 11 15 15 C 1.52999 * 109.51402 * 177.49519 * 13 12 11 16 16 N 1.46494 * 109.47407 * 299.99925 * 15 13 12 17 17 C 1.34773 * 120.00525 * 179.97438 * 16 15 13 18 18 O 1.21625 * 120.00038 * 0.02562 * 17 16 15 19 19 C 1.47327 * 120.00471 * 179.97438 * 17 16 15 20 20 C 1.36294 * 126.23098 * 179.72313 * 19 17 16 21 21 N 1.35749 * 106.91425 * 179.89758 * 20 19 17 22 22 C 1.35672 * 107.70338 * 0.25980 * 21 20 19 23 23 N 1.30602 * 108.90658 * 359.94254 * 22 21 20 24 24 C 1.51594 * 109.82807 * 179.97438 * 22 21 20 25 25 C 1.54512 * 104.27797 * 16.62622 * 24 22 21 26 26 C 1.47082 * 141.29748 * 179.74996 * 21 20 19 27 27 C 1.47154 * 120.97887 * 153.49544 * 9 7 2 28 28 H 0.96999 * 120.00005 * 0.27659 * 1 2 3 29 29 H 1.08993 * 109.68413 * 350.23368 * 10 9 7 30 30 H 1.08997 * 109.68203 * 110.75310 * 10 9 7 31 31 H 1.09004 * 109.50741 * 67.61742 * 11 10 9 32 32 H 1.08993 * 109.51437 * 187.72356 * 11 10 9 33 33 H 1.09007 * 109.47061 * 59.99666 * 15 13 12 34 34 H 1.08997 * 109.47616 * 179.97438 * 15 13 12 35 35 H 0.97008 * 119.99727 * 359.97438 * 16 15 13 36 36 H 1.07998 * 126.53972 * 0.02562 * 20 19 17 37 37 H 1.09005 * 110.47484 * 135.32511 * 24 22 21 38 38 H 1.09005 * 110.47461 * 257.79902 * 24 22 21 39 39 H 1.09000 * 110.93981 * 92.79245 * 25 24 22 40 40 H 1.08996 * 110.94324 * 216.48892 * 25 24 22 41 41 H 1.08998 * 110.23094 * 44.28967 * 26 21 20 42 42 H 1.09003 * 110.29790 * 282.37866 * 26 21 20 43 43 H 1.08999 * 109.68106 * 249.21167 * 27 9 7 44 44 H 1.09001 * 109.68075 * 9.76662 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5034 2.0431 -1.4000 5 1 1.4447 2.6544 0.6943 6 1 3.5448 1.4420 0.7058 7 6 2.0103 -1.2021 0.0057 8 1 3.0553 -1.2236 -0.2663 9 7 1.3701 -2.3607 0.3564 10 6 0.1975 -2.3390 1.2451 11 6 0.4244 -3.3557 2.3698 12 8 0.7649 -4.6213 1.7987 13 6 1.9813 -4.6161 1.0475 14 1 2.8005 -4.2804 1.6833 15 6 2.2745 -6.0294 0.5399 16 7 2.4090 -6.9396 1.6798 17 6 2.6697 -8.2455 1.4724 18 8 2.7937 -8.6683 0.3388 19 6 2.8055 -9.1608 2.6188 20 6 3.0616 -10.4980 2.5561 21 7 3.1078 -10.9517 3.8347 22 6 2.8756 -9.8967 4.6555 23 7 2.6928 -8.8272 3.9285 24 6 2.9157 -10.3512 6.1011 25 6 3.6209 -11.7250 6.0491 26 6 3.3140 -12.1857 4.6080 27 6 1.8307 -3.6635 -0.1495 28 1 -0.4850 0.8400 -0.0041 29 1 0.0770 -1.3425 1.6698 30 1 -0.6956 -2.6081 0.6811 31 1 1.2378 -3.0145 3.0102 32 1 -0.4866 -3.4550 2.9600 33 1 1.4557 -6.3637 -0.0973 34 1 3.2017 -6.0247 -0.0330 35 1 2.3104 -6.6024 2.5840 36 1 3.2031 -11.0842 1.6602 37 1 3.4912 -9.6499 6.7055 38 1 1.9052 -10.4540 6.4967 39 1 4.6945 -11.6179 6.2041 40 1 3.1902 -12.4119 6.7776 41 1 4.1569 -12.7468 4.2048 42 1 2.4121 -12.7976 4.5913 43 1 1.0993 -4.0642 -0.8513 44 1 2.7923 -3.5444 -0.6486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035370607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:48 Heat of formation + Delta-G solvation = 16.130762 kcal Electronic energy + Delta-G solvation = -26421.068011 eV Core-core repulsion = 22568.570040 eV Total energy + Delta-G solvation = -3852.497971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.76780 -39.35012 -38.27706 -36.57169 -34.77594 -34.16262 -32.40174 -31.46820 -30.63696 -29.24030 -27.65198 -27.41805 -25.60012 -23.53865 -23.02711 -22.01322 -21.50317 -20.32623 -20.16146 -19.43431 -17.64871 -16.99574 -16.76191 -16.34719 -15.97452 -15.69439 -14.94294 -14.91095 -14.40737 -14.36780 -14.13777 -13.96051 -13.78286 -13.66017 -13.34725 -13.16572 -13.04644 -12.80080 -12.63826 -12.23445 -12.20980 -11.62320 -11.46271 -11.08110 -10.80600 -10.65374 -10.41952 -10.32797 -10.25109 -10.00558 -9.99230 -9.90661 -9.56894 -8.98568 -8.88257 -8.57726 -8.49850 -6.70423 -5.80525 -3.23786 1.45755 2.20270 2.23968 3.31697 3.36890 3.43545 3.45789 3.49262 3.60145 3.89331 4.07787 4.16274 4.35481 4.47121 4.60274 4.73560 4.83934 4.96900 5.07104 5.21131 5.24061 5.32119 5.35052 5.37503 5.59770 5.60202 5.83524 5.88659 5.96136 6.13552 6.24421 6.35244 6.38781 6.44948 6.56367 6.56489 6.70296 6.82540 7.16701 7.55263 7.57281 7.74706 7.87528 7.94837 8.37457 8.43528 9.15380 9.78268 10.35622 11.27522 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028257 B = 0.002291 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.683761 B =12221.407418 C =12628.402302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.388 6.388 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.130 3.870 16 N -0.703 5.703 17 C 0.602 3.398 18 O -0.552 6.552 19 C -0.049 4.049 20 C 0.050 3.950 21 N -0.481 5.481 22 C 0.186 3.814 23 N -0.446 5.446 24 C -0.040 4.040 25 C -0.129 4.129 26 C 0.101 3.899 27 C 0.122 3.878 28 H 0.255 0.745 29 H 0.094 0.906 30 H 0.028 0.972 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.412 0.588 36 H 0.186 0.814 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.030 0.970 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.496 -25.314 14.070 29.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.198 4.198 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.038 4.038 12 O -0.307 6.307 13 C 0.005 3.995 14 H 0.077 0.923 15 C 0.007 3.993 16 N -0.353 5.353 17 C 0.388 3.612 18 O -0.430 6.430 19 C -0.178 4.178 20 C -0.087 4.087 21 N -0.165 5.165 22 C -0.078 4.078 23 N -0.166 5.166 24 C -0.080 4.080 25 C -0.168 4.168 26 C -0.020 4.020 27 C -0.005 4.005 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.248 0.752 36 H 0.203 0.797 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.122 0.878 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.048 0.952 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.234 -24.970 13.443 29.036 hybrid contribution 0.549 0.519 -0.058 0.758 sum 6.783 -24.451 13.385 28.688 Atomic orbital electron populations 1.70037 1.05273 1.25610 1.53826 1.25054 0.95347 0.98488 1.00865 0.86260 0.79102 0.83430 0.77771 1.21323 1.21507 1.20454 1.19189 0.92617 0.84593 1.41897 0.91368 1.44085 1.33674 1.00997 1.53050 1.21443 0.89084 0.98356 0.89731 1.23309 0.99028 0.84823 0.96599 1.87794 1.41140 1.32356 1.69446 1.22890 0.87590 0.93774 0.95231 0.92285 1.21458 1.02047 0.87446 0.88386 1.45712 1.70674 1.07553 1.11325 1.16801 0.76515 0.81576 0.86336 1.90787 1.52655 1.76989 1.22618 1.20584 1.13515 0.92427 0.91311 1.22205 1.04984 0.95086 0.86434 1.46345 1.52417 1.11463 1.06266 1.24475 1.04989 0.83849 0.94521 1.70233 1.18540 1.26705 1.01135 1.20677 1.03137 0.96153 0.87994 1.22742 1.02632 0.96619 0.94761 1.22466 1.03496 0.84820 0.91188 1.21537 0.98920 0.87183 0.92886 0.93533 0.88823 0.95404 0.94099 0.90089 0.90646 0.90110 0.75209 0.79681 0.88115 0.88303 0.89252 0.87819 0.88852 0.88873 0.95165 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 11.14 55.49 0.62 -25.77 16 2 C 0.00 0.03 4.95 -17.43 -0.09 -0.06 16 3 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.25 -7.03 9.65 -15.06 -0.15 -7.17 16 8 H 0.07 1.84 7.89 -52.48 -0.41 1.43 16 9 N -0.59 -15.28 3.04 -171.57 -0.52 -15.80 16 10 C 0.14 3.42 5.44 -3.53 -0.02 3.40 16 11 C 0.04 0.81 6.99 37.31 0.26 1.07 16 12 O -0.39 -7.81 10.13 -35.23 -0.36 -8.17 16 13 C 0.07 1.22 2.88 -26.36 -0.08 1.15 16 14 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 15 C 0.13 2.19 5.37 -4.05 -0.02 2.17 16 16 N -0.70 -11.46 5.44 -61.42 -0.33 -11.80 16 17 C 0.60 10.04 7.81 -12.57 -0.10 9.95 16 18 O -0.55 -10.37 16.88 5.26 0.09 -10.28 16 19 C -0.05 -0.71 6.97 -83.20 -0.58 -1.29 16 20 C 0.05 0.58 11.75 -16.52 -0.19 0.39 16 21 N -0.48 -4.32 3.55 -112.00 -0.40 -4.72 16 22 C 0.19 1.93 8.58 -154.31 -1.32 0.61 16 23 N -0.45 -6.29 11.01 -6.96 -0.08 -6.36 16 24 C -0.04 -0.21 6.85 -26.65 -0.18 -0.39 16 25 C -0.13 -0.28 7.16 -25.22 -0.18 -0.46 16 26 C 0.10 0.39 7.78 -3.00 -0.02 0.37 16 27 C 0.12 2.64 6.05 -3.31 -0.02 2.62 16 28 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.09 2.50 6.14 -51.93 -0.32 2.18 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.41 6.61 8.06 -40.82 -0.33 6.28 16 36 H 0.19 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 41 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.06 1.32 7.96 -51.93 -0.41 0.90 16 LS Contribution 362.58 15.07 5.46 5.46 Total: -1.00 -35.53 362.58 -9.76 -45.30 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.53 Total: 3.07 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: -2.69 Total: 12.35 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -0.71 Total: -64.45 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.27 Total: -18.45 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.53 -9.76 -45.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035370607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.428 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds