Wall clock time and date at job start Tue Mar 31 2020 04:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99701 * 2 1 4 4 H 1.48503 * 109.47138 * 270.00547 * 3 2 1 5 5 H 1.48506 * 109.46900 * 30.00333 * 3 2 1 6 6 H 1.48490 * 109.46994 * 150.00096 * 3 2 1 7 7 C 1.38806 * 120.00466 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00155 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00206 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00075 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.01597 * 33.60202 * 10 9 7 12 12 C 1.54272 * 110.02839 * 272.16153 * 10 9 7 13 13 C 1.54884 * 104.19546 * 264.32372 * 12 10 9 14 14 C 1.54882 * 102.75074 * 322.05843 * 13 12 10 15 15 H 1.09002 * 110.60150 * 279.20705 * 14 13 12 16 16 C 1.53007 * 110.48587 * 156.62118 * 14 13 12 17 17 N 1.46499 * 109.46973 * 70.22452 * 16 14 13 18 18 C 1.34783 * 119.99606 * 179.97438 * 17 16 14 19 19 O 1.21603 * 120.00028 * 0.02562 * 18 17 16 20 20 C 1.47390 * 119.99606 * 179.97438 * 18 17 16 21 21 C 1.38210 * 126.46646 * 359.97438 * 20 18 17 22 22 N 1.34257 * 108.39872 * 180.02562 * 21 20 18 23 23 H 0.97002 * 125.39082 * 180.26649 * 22 21 20 24 24 C 1.37785 * 109.21574 * 359.97438 * 22 21 20 25 25 C 1.46813 * 125.84768 * 180.02562 * 24 22 21 26 26 N 1.34779 * 119.99782 * 359.97284 * 25 24 22 27 27 O 1.21676 * 119.99884 * 179.97438 * 25 24 22 28 28 C 1.36345 * 108.30309 * 0.02562 * 24 22 21 29 29 C 1.53876 * 110.03358 * 155.00128 * 10 9 7 30 30 H 0.96993 * 120.00262 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99612 * 359.97438 * 9 7 2 32 32 H 1.09002 * 110.48363 * 23.01227 * 12 10 9 33 33 H 1.09006 * 110.48199 * 145.51637 * 12 10 9 34 34 H 1.09001 * 110.75341 * 203.74032 * 13 12 10 35 35 H 1.09003 * 110.75211 * 80.38017 * 13 12 10 36 36 H 1.09009 * 109.46760 * 310.22420 * 16 14 13 37 37 H 1.08998 * 109.47191 * 190.22854 * 16 14 13 38 38 H 0.96995 * 119.99945 * 0.02562 * 17 16 14 39 39 H 1.08004 * 125.79990 * 0.05589 * 21 20 18 40 40 H 0.96990 * 120.00240 * 0.02562 * 26 25 24 41 41 H 0.97002 * 119.99210 * 179.97438 * 26 25 24 42 42 H 1.08000 * 126.49733 * 179.97438 * 28 24 22 43 43 H 1.08994 * 110.03102 * 359.97438 * 29 10 9 44 44 H 1.09005 * 110.02697 * 238.56773 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1375 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1123 -2.4706 -0.0022 11 1 3.5599 -3.2199 -0.5693 12 6 4.3297 -2.9565 1.4458 13 6 5.7477 -2.4494 1.8077 14 6 6.5283 -2.6435 0.4841 15 1 6.8457 -3.6805 0.3746 16 6 7.7370 -1.7067 0.4330 17 7 8.7410 -2.1517 1.4027 18 6 9.8982 -1.4733 1.5338 19 8 10.1087 -0.4917 0.8476 20 6 10.9081 -1.9206 2.5098 21 6 10.8084 -3.0103 3.3540 22 7 11.9308 -3.0825 4.0871 23 1 12.1220 -3.7577 4.7567 24 6 12.7710 -2.0494 3.7330 25 6 14.0962 -1.7838 4.3063 26 7 14.5873 -2.5888 5.2693 27 8 14.7509 -0.8371 3.9122 28 6 12.1608 -1.3160 2.7589 29 6 5.5103 -2.2716 -0.6135 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3619 -0.0014 32 1 3.5861 -2.5177 2.1111 33 1 4.2879 -4.0447 1.4933 34 1 6.1821 -3.0531 2.6045 35 1 5.7211 -1.3968 2.0898 36 1 7.4210 -0.6923 0.6766 37 1 8.1669 -1.7227 -0.5685 38 1 8.5732 -2.9348 1.9497 39 1 9.9701 -3.6887 3.4136 40 1 14.0655 -3.3437 5.5833 41 1 15.4631 -2.4135 5.6478 42 1 12.5593 -0.4391 2.2704 43 1 5.6435 -1.2311 -0.9098 44 1 5.6367 -2.9249 -1.4769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086876310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:45 Heat of formation + Delta-G solvation = -28.277939 kcal Electronic energy + Delta-G solvation = -25726.677088 eV Core-core repulsion = 21872.253412 eV Total energy + Delta-G solvation = -3854.423676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 3.15 seconds Orbital eigenvalues (eV) -42.05570 -39.68651 -39.13683 -38.12141 -34.97050 -34.38759 -33.33080 -31.85348 -31.03241 -30.13501 -28.94475 -27.60272 -24.87040 -23.63134 -22.89431 -22.70395 -20.76310 -20.37761 -19.79520 -19.43175 -19.20726 -17.55350 -17.51064 -16.68008 -16.40450 -16.06488 -15.80914 -15.30192 -14.97576 -14.65668 -14.47782 -14.21825 -14.12076 -13.93240 -13.49944 -13.27363 -13.06573 -12.82846 -12.65562 -12.31264 -11.85049 -11.36549 -10.90222 -10.83182 -10.78351 -10.61476 -10.46588 -10.38259 -10.37698 -10.33182 -10.06127 -9.90196 -9.60698 -9.56273 -9.11527 -8.88727 -8.86088 -7.22922 -5.75200 -3.10123 0.88010 1.47908 2.35643 2.78620 2.80542 3.18912 3.36881 3.40960 3.44692 3.48953 4.29758 4.31601 4.52083 4.61713 4.73193 4.82560 4.88363 4.98813 5.33293 5.43370 5.50249 5.50896 5.59970 5.69337 5.73512 5.88149 5.91695 5.99181 6.04161 6.10363 6.11409 6.21306 6.23206 6.31704 6.38784 6.52812 6.56645 6.66088 6.73566 6.80829 7.00339 7.45571 7.61633 8.02745 8.20705 8.44599 9.23841 9.96767 10.16608 11.43164 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024826 B = 0.002131 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.570629 B =13137.387253 C =13565.871516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.179 3.821 11 H 0.057 0.943 12 C -0.146 4.146 13 C -0.114 4.114 14 C -0.104 4.104 15 H 0.077 0.923 16 C 0.127 3.873 17 N -0.724 5.724 18 C 0.584 3.416 19 O -0.539 6.539 20 C -0.227 4.227 21 C 0.076 3.924 22 N -0.527 5.527 23 H 0.420 0.580 24 C -0.073 4.073 25 C 0.595 3.405 26 N -0.856 5.856 27 O -0.525 6.525 28 C -0.037 4.037 29 C -0.124 4.124 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.396 0.604 39 H 0.184 0.816 40 H 0.395 0.605 41 H 0.409 0.591 42 H 0.160 0.840 43 H 0.069 0.931 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.644 -13.731 11.959 33.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.388 5.388 10 C 0.069 3.931 11 H 0.075 0.925 12 C -0.186 4.186 13 C -0.152 4.152 14 C -0.123 4.123 15 H 0.095 0.905 16 C 0.004 3.996 17 N -0.375 5.375 18 C 0.372 3.628 19 O -0.417 6.417 20 C -0.237 4.237 21 C -0.065 4.065 22 N -0.122 5.122 23 H 0.257 0.743 24 C -0.183 4.183 25 C 0.381 3.619 26 N -0.420 5.420 27 O -0.400 6.400 28 C -0.063 4.063 29 C -0.163 4.163 30 H 0.069 0.931 31 H 0.194 0.806 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.230 0.770 39 H 0.200 0.800 40 H 0.222 0.778 41 H 0.241 0.759 42 H 0.178 0.822 43 H 0.088 0.912 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 27.912 -12.464 11.167 32.544 hybrid contribution 0.505 0.080 1.050 1.167 sum 28.417 -12.384 12.216 33.318 Atomic orbital electron populations 1.69700 1.05117 1.25791 1.57672 1.24672 0.95226 0.97208 1.02111 0.86575 0.79260 0.84995 0.77853 1.21074 1.21837 1.20233 1.19087 0.80743 0.94624 1.42800 0.89259 1.42911 1.03928 1.01943 1.90003 1.20774 0.90161 0.89163 0.92971 0.92480 1.23089 0.95984 0.98988 1.00573 1.22520 0.96121 1.01257 0.95270 1.22248 0.93975 0.98695 0.97341 0.90477 1.21522 0.87369 0.98617 0.92138 1.45838 1.17749 1.31869 1.42079 1.17362 0.80859 0.82733 0.81893 1.90808 1.78467 1.26440 1.45977 1.19760 0.98369 1.00879 1.04708 1.22502 0.90768 0.99492 0.93760 1.41668 1.14598 1.23919 1.31999 0.74251 1.19979 0.94674 0.96591 1.07057 1.17025 0.83975 0.82066 0.78806 1.43702 1.23673 1.32573 1.42087 1.90928 1.58985 1.29288 1.60827 1.21169 0.92109 0.98708 0.94356 1.22492 0.94793 1.02011 0.97011 0.93115 0.80635 0.90743 0.92931 0.92814 0.91480 0.91122 0.91463 0.77029 0.79950 0.77753 0.75928 0.82240 0.91204 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.34 13.97 55.49 0.78 -28.56 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 22.32 27.73 -169.99 -4.71 17.60 16 4 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.28 -6.60 6.52 56.52 0.37 -6.24 16 7 C -0.24 -6.74 10.44 -15.06 -0.16 -6.90 16 8 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 9 N -0.75 -17.15 4.88 -52.34 -0.26 -17.41 16 10 C 0.18 3.24 3.56 -66.81 -0.24 3.00 16 11 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 12 C -0.15 -2.30 6.54 -25.07 -0.16 -2.46 16 13 C -0.11 -1.44 6.19 -24.75 -0.15 -1.60 16 14 C -0.10 -1.18 2.89 -88.96 -0.26 -1.44 16 15 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 16 C 0.13 1.51 4.96 -4.04 -0.02 1.49 16 17 N -0.72 -7.15 5.44 -61.39 -0.33 -7.49 16 18 C 0.58 7.26 7.81 -12.53 -0.10 7.16 16 19 O -0.54 -9.21 16.92 5.28 0.09 -9.13 16 20 C -0.23 -2.16 6.13 -105.01 -0.64 -2.80 16 21 C 0.08 0.37 11.43 -16.50 -0.19 0.18 16 22 N -0.53 -1.90 5.91 -9.30 -0.05 -1.95 16 23 H 0.42 -0.22 8.14 -40.82 -0.33 -0.56 16 24 C -0.07 -0.55 6.99 -82.41 -0.58 -1.13 16 25 C 0.60 4.80 8.06 -12.79 -0.10 4.70 16 26 N -0.86 -2.61 8.87 30.29 0.27 -2.34 16 27 O -0.53 -6.69 17.69 5.21 0.09 -6.60 16 28 C -0.04 -0.39 10.37 -39.10 -0.41 -0.80 16 29 C -0.12 -1.78 6.14 -25.62 -0.16 -1.94 16 30 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 31 H 0.36 8.29 5.38 -40.82 -0.22 8.07 16 32 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.98 7.97 -51.93 -0.41 0.56 16 36 H 0.07 0.99 8.02 -51.92 -0.42 0.58 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 2.56 7.35 -40.82 -0.30 2.26 16 39 H 0.18 0.19 7.44 -52.48 -0.39 -0.20 16 40 H 0.39 -0.16 7.91 -40.82 -0.32 -0.49 16 41 H 0.41 0.89 8.93 -40.82 -0.36 0.52 16 42 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 43 H 0.07 1.08 7.31 -51.93 -0.38 0.70 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 368.85 15.07 5.56 5.56 Total: -1.00 -39.24 368.85 -7.94 -47.17 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.10 Total: 5.68 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -3.26 Total: -2.53 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.40 Total: -57.76 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.18 Total: -15.72 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -39.24 -7.94 -47.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086876310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.897 kcal (2) G-P(sol) polarization free energy of solvation -39.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds