Wall clock time and date at job start Tue Mar 31 2020 05:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38497 * 120.81435 * 2 1 4 4 C 1.39261 * 119.18705 * 179.75091 * 3 2 1 5 5 C 1.48331 * 119.57330 * 180.24890 * 4 3 2 6 6 O 1.21491 * 119.99634 * 0.28138 * 5 4 3 7 7 N 1.34774 * 120.00263 * 180.27822 * 5 4 3 8 8 C 1.46502 * 119.99706 * 180.02562 * 7 5 4 9 9 C 1.53007 * 109.46991 * 179.97438 * 8 7 5 10 10 H 1.09007 * 109.46817 * 55.00098 * 9 8 7 11 11 C 1.52998 * 109.47068 * 294.99956 * 9 8 7 12 12 C 1.53000 * 109.47267 * 174.99507 * 9 8 7 13 13 N 1.46500 * 109.46825 * 185.00098 * 12 9 8 14 14 C 1.36938 * 119.99503 * 180.02562 * 13 12 9 15 15 H 1.08002 * 120.00378 * 0.02562 * 14 13 12 16 16 C 1.38812 * 120.00228 * 180.02562 * 14 13 12 17 17 N 1.31622 * 119.99457 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00461 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47170 * 89.99881 * 18 16 14 20 20 H 1.48502 * 109.46989 * 209.99887 * 18 16 14 21 21 H 1.48497 * 109.47187 * 329.99907 * 18 16 14 22 22 N 1.32751 * 120.85726 * 0.53504 * 4 3 2 23 23 C 1.31386 * 121.80097 * 359.71855 * 22 4 3 24 24 C 1.39765 * 120.71708 * 0.02562 * 23 22 4 25 25 C 1.48014 * 120.46122 * 180.02562 * 24 23 22 26 26 N 1.34782 * 119.99764 * 353.96977 * 25 24 23 27 27 O 1.21519 * 119.99859 * 173.97261 * 25 24 23 28 28 H 1.08999 * 109.47130 * 263.10886 * 1 2 3 29 29 H 1.09002 * 109.46690 * 143.11979 * 1 2 3 30 30 H 1.08992 * 109.47588 * 23.11266 * 1 2 3 31 31 H 1.07993 * 120.40649 * 0.02562 * 3 2 1 32 32 H 0.96997 * 120.00170 * 359.97438 * 7 5 4 33 33 H 1.08999 * 109.47448 * 299.99411 * 8 7 5 34 34 H 1.08999 * 109.47324 * 59.99989 * 8 7 5 35 35 H 1.09001 * 109.47062 * 299.99629 * 11 9 8 36 36 H 1.09002 * 109.46805 * 60.00178 * 11 9 8 37 37 H 1.09001 * 109.46803 * 179.97438 * 11 9 8 38 38 H 1.08998 * 109.47134 * 305.00180 * 12 9 8 39 39 H 1.09000 * 109.46467 * 65.00405 * 12 9 8 40 40 H 0.96992 * 120.00235 * 0.02562 * 13 12 9 41 41 H 0.97006 * 120.00031 * 180.02562 * 17 16 14 42 42 H 1.07999 * 119.63929 * 180.02562 * 23 22 4 43 43 H 0.96998 * 119.99620 * 0.02562 * 26 25 24 44 44 H 0.96995 * 119.99677 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.1895 0.0000 4 6 3.6085 1.1499 0.0053 5 6 4.3769 2.4187 0.0109 6 8 3.7916 3.4833 0.0161 7 7 5.7244 2.3905 0.0104 8 6 6.4832 3.6437 0.0165 9 6 7.9813 3.3328 0.0152 10 1 8.2173 2.6859 -0.8298 11 6 8.3567 2.6260 1.3191 12 6 8.7727 4.6368 -0.1043 13 7 10.2005 4.3320 -0.2257 14 6 11.1098 5.3489 -0.3454 15 1 10.7745 6.3755 -0.3498 16 6 12.4627 5.0602 -0.4610 17 7 12.8713 3.8091 -0.4561 18 14 13.7032 6.4473 -0.6235 19 1 14.1611 6.8626 0.7267 20 1 14.8669 5.9799 -1.4189 21 1 13.0677 7.6021 -1.3075 22 7 4.2568 -0.0085 -0.0004 23 6 3.6205 -1.1580 -0.0056 24 6 2.2235 -1.2007 -0.0059 25 6 1.5124 -2.4988 -0.0113 26 7 2.2068 -3.6470 -0.1384 27 8 0.3026 -2.5294 0.0990 28 1 -0.3633 -0.1233 1.0202 29 1 -0.3633 -0.8221 -0.6168 30 1 -0.3634 0.9451 -0.4034 31 1 1.6966 2.1360 0.0004 32 1 6.1917 1.5406 0.0067 33 1 6.2317 4.2252 -0.8704 34 1 6.2321 4.2161 0.9095 35 1 8.1207 3.2729 2.1641 36 1 7.7928 1.6970 1.4041 37 1 9.4238 2.4041 1.3179 38 1 8.4414 5.1832 -0.9873 39 1 8.6054 5.2458 0.7841 40 1 10.5017 3.4100 -0.2213 41 1 13.8167 3.6073 -0.5365 42 1 4.1831 -2.0799 -0.0097 43 1 3.1725 -3.6225 -0.2261 44 1 1.7408 -4.4976 -0.1423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753629871.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:28 Heat of formation + Delta-G solvation = -36.008621 kcal Electronic energy + Delta-G solvation = -25555.182438 eV Core-core repulsion = 21700.423534 eV Total energy + Delta-G solvation = -3854.758904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.42122 -39.95327 -38.86577 -36.85920 -34.89771 -34.47797 -34.05871 -32.50897 -31.78929 -30.02523 -28.41782 -26.96297 -25.84701 -24.74270 -23.35745 -22.49156 -21.75557 -20.59081 -19.90874 -18.49146 -18.19684 -17.68124 -16.93379 -16.68017 -15.88273 -15.77875 -15.62633 -15.37662 -15.01935 -14.59194 -14.48982 -14.11067 -13.90740 -13.60358 -13.29548 -13.23638 -13.13631 -12.98427 -12.66222 -12.61995 -12.31118 -12.04614 -11.06303 -10.91734 -10.74989 -10.71884 -10.60931 -10.52015 -10.35367 -10.33324 -10.06068 -10.02236 -9.85428 -9.78209 -9.66817 -9.08708 -8.87488 -6.92038 -5.76861 -3.05188 -0.21646 0.64745 1.99994 2.68827 2.81183 2.90613 3.42913 3.44069 3.49298 3.50903 3.60434 4.05789 4.16774 4.28128 4.43870 4.59407 4.67880 4.96819 5.02905 5.18851 5.20680 5.24938 5.31297 5.39561 5.57828 5.58615 5.80546 5.81864 5.94598 5.96194 5.98511 6.10346 6.19112 6.24673 6.37735 6.42913 6.65977 6.67602 6.77606 6.86715 7.07057 7.44608 7.62143 7.70729 8.00542 8.42316 9.53576 10.10968 10.45771 11.46121 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029367 B = 0.001948 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.211443 B =14371.742484 C =15161.105119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.017 3.983 3 C -0.123 4.123 4 C 0.113 3.887 5 C 0.564 3.436 6 O -0.530 6.530 7 N -0.700 5.700 8 C 0.123 3.877 9 C -0.110 4.110 10 H 0.078 0.922 11 C -0.142 4.142 12 C 0.161 3.839 13 N -0.731 5.731 14 C -0.238 4.238 15 H 0.071 0.929 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.908 3.092 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 N -0.465 5.465 23 C 0.141 3.859 24 C -0.186 4.186 25 C 0.570 3.430 26 N -0.848 5.848 27 O -0.529 6.529 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.157 0.843 32 H 0.412 0.588 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.021 0.979 39 H 0.023 0.977 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.166 0.834 43 H 0.402 0.598 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.123 -15.823 1.304 28.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.009 3.991 3 C -0.144 4.144 4 C -0.024 4.024 5 C 0.347 3.653 6 O -0.407 6.407 7 N -0.350 5.350 8 C 0.000 4.000 9 C -0.130 4.130 10 H 0.096 0.904 11 C -0.200 4.200 12 C 0.032 3.968 13 N -0.375 5.375 14 C -0.369 4.369 15 H 0.089 0.911 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 N -0.177 5.177 23 C -0.021 4.021 24 C -0.191 4.191 25 C 0.355 3.645 26 N -0.412 5.412 27 O -0.406 6.406 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.175 0.825 32 H 0.248 0.752 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.183 0.817 43 H 0.232 0.768 44 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -24.290 -14.637 1.366 28.392 hybrid contribution 0.688 -0.445 -0.121 0.828 sum -23.601 -15.082 1.246 28.037 Atomic orbital electron populations 1.21128 0.88411 1.04027 1.04386 1.20523 0.97900 0.90824 0.89871 1.22099 0.93696 0.99677 0.98890 1.21469 0.91808 0.92426 0.96714 1.17842 0.82653 0.87113 0.77673 1.90804 1.69751 1.30014 1.50092 1.45934 1.05485 1.11285 1.72338 1.21541 0.90779 0.84964 1.02707 1.21558 0.92305 0.99726 0.99368 0.90392 1.21800 1.02619 0.99029 0.96521 1.20576 0.85572 0.92571 0.98045 1.42336 0.99744 1.06813 1.88636 1.19239 0.87471 0.88318 1.41905 0.91142 1.24742 0.97023 0.96293 1.03051 1.69660 1.14627 1.16385 1.57642 0.86173 0.81205 0.81218 0.77505 1.21745 1.21803 1.20758 1.67579 1.40527 0.97725 1.11838 1.22915 0.90152 0.96330 0.92718 1.20946 0.95261 0.94340 1.08561 1.18009 0.86752 0.83925 0.75789 1.43748 1.11895 1.08634 1.76959 1.90795 1.13574 1.87098 1.49123 0.89612 0.88236 0.91183 0.82492 0.75150 0.90934 0.90944 0.92823 0.93743 0.91095 0.96085 0.95952 0.78183 0.93545 0.81708 0.76789 0.75990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 8.83 36.01 0.32 -0.60 16 2 C 0.02 0.15 5.95 -103.93 -0.62 -0.47 16 3 C -0.12 -1.18 9.30 -39.11 -0.36 -1.54 16 4 C 0.11 1.24 6.75 -82.94 -0.56 0.68 16 5 C 0.56 7.41 7.82 -12.11 -0.09 7.31 16 6 O -0.53 -8.39 16.31 5.37 0.09 -8.30 16 7 N -0.70 -8.64 5.27 -61.09 -0.32 -8.96 16 8 C 0.12 1.69 5.07 -4.04 -0.02 1.66 16 9 C -0.11 -1.69 2.46 -90.62 -0.22 -1.91 16 10 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 11 C -0.14 -2.11 8.94 37.16 0.33 -1.77 16 12 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 13 N -0.73 -18.21 5.33 -59.91 -0.32 -18.53 16 14 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 15 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 16 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 17 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 18 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 N -0.47 -4.43 9.52 -9.48 -0.09 -4.52 16 23 C 0.14 0.97 10.69 -17.17 -0.18 0.78 16 24 C -0.19 -1.41 5.90 -104.73 -0.62 -2.03 16 25 C 0.57 4.11 8.00 -12.25 -0.10 4.01 16 26 N -0.85 -2.72 8.83 30.57 0.27 -2.45 16 27 O -0.53 -5.42 14.33 5.35 0.08 -5.35 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 0.84 5.96 -51.93 -0.31 0.53 16 30 H 0.07 0.42 8.06 -51.93 -0.42 0.00 16 31 H 0.16 1.42 7.63 -52.49 -0.40 1.02 16 32 H 0.41 4.58 6.98 -40.82 -0.28 4.29 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.55 7.18 -51.93 -0.37 0.17 16 37 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.38 9.95 6.85 -40.82 -0.28 9.67 16 41 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.17 0.48 6.46 -52.49 -0.34 0.14 16 43 H 0.40 0.27 6.93 -40.82 -0.28 -0.02 16 44 H 0.41 0.84 8.93 -40.82 -0.36 0.47 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -34.88 369.64 -7.35 -42.24 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.93 Total: 8.32 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -2.40 Total: 1.91 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: 0.26 Total: -61.78 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.16 Total: -13.64 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.88 -7.35 -42.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753629871.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.228 kcal (2) G-P(sol) polarization free energy of solvation -34.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds