Wall clock time and date at job start Tue Mar 31 2020 05:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38495 * 120.82128 * 2 1 4 4 C 1.39265 * 119.18898 * 180.24529 * 3 2 1 5 5 C 1.48333 * 119.56846 * 179.74741 * 4 3 2 6 6 O 1.21493 * 119.99909 * 359.71876 * 5 4 3 7 7 N 1.34775 * 120.00097 * 179.71910 * 5 4 3 8 8 C 1.46491 * 120.00222 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47409 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.46775 * 304.99956 * 9 8 7 11 11 C 1.52998 * 109.47247 * 65.00052 * 9 8 7 12 12 C 1.52997 * 109.47486 * 184.99982 * 9 8 7 13 13 N 1.46503 * 109.47383 * 174.99635 * 12 9 8 14 14 C 1.36934 * 119.99706 * 179.72718 * 13 12 9 15 15 H 1.07999 * 120.00836 * 0.27639 * 14 13 12 16 16 C 1.38818 * 119.99541 * 180.28104 * 14 13 12 17 17 N 1.31614 * 120.00320 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99760 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47227 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.47004 * 119.99767 * 18 16 14 21 21 H 1.48499 * 109.46899 * 239.99555 * 18 16 14 22 22 N 1.32742 * 120.86035 * 359.46302 * 4 3 2 23 23 C 1.31390 * 121.79697 * 0.26226 * 22 4 3 24 24 C 1.39760 * 120.72281 * 0.02562 * 23 22 4 25 25 C 1.48003 * 120.46633 * 180.02562 * 24 23 22 26 26 N 1.34776 * 120.00175 * 353.89578 * 25 24 23 27 27 O 1.21534 * 120.00295 * 173.90001 * 25 24 23 28 28 H 1.08994 * 109.47418 * 263.91781 * 1 2 3 29 29 H 1.09003 * 109.46939 * 23.91448 * 1 2 3 30 30 H 1.09005 * 109.47080 * 143.91417 * 1 2 3 31 31 H 1.07995 * 120.40546 * 359.96471 * 3 2 1 32 32 H 0.97000 * 119.99673 * 0.02562 * 7 5 4 33 33 H 1.09004 * 109.47240 * 60.00134 * 8 7 5 34 34 H 1.08999 * 109.47555 * 300.00302 * 8 7 5 35 35 H 1.08999 * 109.47311 * 60.00233 * 11 9 8 36 36 H 1.09000 * 109.47387 * 180.02562 * 11 9 8 37 37 H 1.09003 * 109.47046 * 299.99986 * 11 9 8 38 38 H 1.09009 * 109.47123 * 54.99730 * 12 9 8 39 39 H 1.08997 * 109.47412 * 295.00469 * 12 9 8 40 40 H 0.96998 * 119.99438 * 0.02562 * 13 12 9 41 41 H 0.96996 * 120.00611 * 180.02562 * 17 16 14 42 42 H 1.08002 * 119.63620 * 179.97438 * 23 22 4 43 43 H 0.97007 * 119.99607 * 0.02562 * 26 25 24 44 44 H 0.96998 * 120.00735 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1894 0.0000 4 6 3.6087 1.1497 -0.0052 5 6 4.3771 2.4185 -0.0109 6 8 3.7918 3.4831 -0.0162 7 7 5.7245 2.3903 -0.0103 8 6 6.4834 3.6433 -0.0165 9 6 7.9815 3.3323 -0.0150 10 1 8.2174 2.6855 0.8301 11 6 8.3570 2.6253 -1.3188 12 6 8.7730 4.6362 0.1043 13 7 10.2008 4.3315 0.2260 14 6 11.1106 5.3485 0.3404 15 1 10.7753 6.3751 0.3455 16 6 12.4640 5.0599 0.4498 17 7 12.8727 3.8088 0.4441 18 14 13.7052 6.4472 0.6052 19 1 12.9951 7.7513 0.5856 20 1 14.4475 6.3064 1.8838 21 1 14.6599 6.3868 -0.5306 22 7 4.2569 -0.0087 0.0006 23 6 3.6204 -1.1581 0.0062 24 6 2.2235 -1.2008 0.0058 25 6 1.5123 -2.4988 0.0127 26 7 2.2064 -3.6481 -0.1046 27 8 0.3025 -2.5283 0.1242 28 1 -0.3634 -0.1089 1.0218 29 1 -0.3633 0.9395 -0.4166 30 1 -0.3633 -0.8305 -0.6053 31 1 1.6968 2.1360 -0.0006 32 1 6.1918 1.5403 -0.0064 33 1 6.2318 4.2249 0.8704 34 1 6.2325 4.2157 -0.9095 35 1 8.1211 3.2721 -2.1638 36 1 9.4241 2.4033 -1.3175 37 1 7.7931 1.6963 -1.4037 38 1 8.4416 5.1830 0.9872 39 1 8.6058 5.2453 -0.7840 40 1 10.5020 3.4094 0.2211 41 1 13.8183 3.6071 0.5209 42 1 4.1830 -2.0801 0.0104 43 1 3.1721 -3.6246 -0.1933 44 1 1.7404 -4.4988 -0.1004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753629873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:34 Heat of formation + Delta-G solvation = -36.059812 kcal Electronic energy + Delta-G solvation = -25555.444217 eV Core-core repulsion = 21700.683093 eV Total energy + Delta-G solvation = -3854.761124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.42131 -39.95295 -38.86542 -36.86079 -34.89797 -34.47889 -34.05900 -32.51059 -31.78980 -30.02733 -28.41803 -26.96414 -25.84906 -24.74445 -23.35778 -22.49363 -21.75632 -20.59146 -19.91010 -18.49141 -18.19716 -17.68211 -16.93559 -16.68058 -15.92904 -15.71559 -15.58397 -15.46181 -14.98490 -14.61208 -14.48175 -14.10556 -13.91648 -13.60484 -13.31183 -13.22444 -13.12546 -12.98523 -12.67690 -12.61386 -12.31144 -12.04872 -11.06501 -10.92703 -10.75054 -10.72854 -10.60616 -10.51998 -10.34914 -10.33137 -10.04936 -10.00802 -9.85515 -9.78224 -9.67403 -9.08743 -8.88204 -6.92157 -5.77154 -3.05432 -0.21698 0.64692 1.99902 2.68797 2.81108 2.90546 3.42863 3.43504 3.49431 3.51530 3.60417 4.05775 4.16737 4.28075 4.43870 4.59219 4.67824 4.96836 5.02833 5.18776 5.20601 5.24922 5.31279 5.39449 5.57692 5.58550 5.80419 5.81897 5.94521 5.96115 5.98481 6.10166 6.19093 6.24539 6.37644 6.42840 6.65803 6.67528 6.77503 6.86592 7.07009 7.44538 7.62093 7.71122 8.00488 8.41966 9.53364 10.10754 10.45549 11.45912 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029386 B = 0.001948 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.606624 B =14373.181091 C =15162.282487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.017 3.983 3 C -0.123 4.123 4 C 0.113 3.887 5 C 0.564 3.436 6 O -0.530 6.530 7 N -0.700 5.700 8 C 0.123 3.877 9 C -0.110 4.110 10 H 0.078 0.922 11 C -0.142 4.142 12 C 0.160 3.840 13 N -0.731 5.731 14 C -0.238 4.238 15 H 0.071 0.929 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 N -0.465 5.465 23 C 0.141 3.859 24 C -0.186 4.186 25 C 0.570 3.430 26 N -0.848 5.848 27 O -0.529 6.529 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.157 0.843 32 H 0.412 0.588 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.021 0.979 39 H 0.023 0.977 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.166 0.834 43 H 0.402 0.598 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.157 -15.813 -2.181 28.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.009 3.991 3 C -0.144 4.144 4 C -0.024 4.024 5 C 0.347 3.653 6 O -0.407 6.407 7 N -0.350 5.350 8 C 0.000 4.000 9 C -0.130 4.130 10 H 0.096 0.904 11 C -0.200 4.200 12 C 0.032 3.968 13 N -0.375 5.375 14 C -0.369 4.369 15 H 0.089 0.911 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.738 3.262 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.219 1.219 22 N -0.177 5.177 23 C -0.021 4.021 24 C -0.191 4.191 25 C 0.355 3.645 26 N -0.412 5.412 27 O -0.406 6.406 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.175 0.825 32 H 0.248 0.752 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.183 0.817 43 H 0.232 0.768 44 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -24.330 -14.619 -2.094 28.461 hybrid contribution 0.696 -0.455 0.079 0.836 sum -23.633 -15.074 -2.014 28.104 Atomic orbital electron populations 1.21132 0.88413 1.04076 1.04358 1.20525 0.97900 0.90820 0.89868 1.22099 0.93695 0.99681 0.98892 1.21468 0.91808 0.92426 0.96712 1.17843 0.82652 0.87114 0.77673 1.90804 1.69755 1.30009 1.50091 1.45932 1.05486 1.11285 1.72338 1.21537 0.90776 0.84968 1.02708 1.21554 0.92306 0.99726 0.99372 0.90390 1.21799 1.02620 0.99028 0.96521 1.20577 0.85573 0.92571 0.98049 1.42345 0.99737 1.06811 1.88644 1.19287 0.87412 0.88345 1.41831 0.91077 1.24742 0.97016 0.96290 1.03076 1.69661 1.14528 1.16374 1.57733 0.86108 0.81569 0.81261 0.77212 1.20538 1.21897 1.21899 1.67579 1.40522 0.97726 1.11838 1.22915 0.90151 0.96333 0.92718 1.20944 0.95259 0.94337 1.08563 1.18009 0.86753 0.83927 0.75786 1.43750 1.11906 1.08568 1.77005 1.90798 1.13571 1.87145 1.49084 0.89606 0.91184 0.88220 0.82492 0.75150 0.90936 0.90944 0.92824 0.91096 0.93742 0.96078 0.95951 0.78186 0.93588 0.81709 0.76790 0.75988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 8.83 36.01 0.32 -0.60 16 2 C 0.02 0.15 5.95 -103.93 -0.62 -0.47 16 3 C -0.12 -1.18 9.30 -39.10 -0.36 -1.54 16 4 C 0.11 1.24 6.75 -82.94 -0.56 0.68 16 5 C 0.56 7.40 7.82 -12.11 -0.09 7.31 16 6 O -0.53 -8.38 16.31 5.37 0.09 -8.30 16 7 N -0.70 -8.64 5.27 -61.10 -0.32 -8.96 16 8 C 0.12 1.68 5.06 -4.05 -0.02 1.66 16 9 C -0.11 -1.69 2.46 -90.62 -0.22 -1.91 16 10 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 11 C -0.14 -2.10 8.94 37.16 0.33 -1.77 16 12 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 13 N -0.73 -18.20 5.33 -59.91 -0.32 -18.52 16 14 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 16 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 17 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 18 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 N -0.47 -4.43 9.52 -9.48 -0.09 -4.52 16 23 C 0.14 0.97 10.69 -17.17 -0.18 0.78 16 24 C -0.19 -1.41 5.90 -104.73 -0.62 -2.03 16 25 C 0.57 4.11 8.00 -12.26 -0.10 4.01 16 26 N -0.85 -2.71 8.83 30.57 0.27 -2.44 16 27 O -0.53 -5.42 14.32 5.34 0.08 -5.35 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 30 H 0.10 0.84 5.95 -51.93 -0.31 0.53 16 31 H 0.16 1.42 7.63 -52.49 -0.40 1.02 16 32 H 0.41 4.57 6.98 -40.82 -0.28 4.29 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 37 H 0.04 0.54 7.18 -51.93 -0.37 0.17 16 38 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.38 9.95 6.85 -40.82 -0.28 9.67 16 41 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.17 0.48 6.46 -52.49 -0.34 0.14 16 43 H 0.40 0.26 6.93 -40.82 -0.28 -0.02 16 44 H 0.41 0.84 8.93 -40.82 -0.36 0.47 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -34.91 369.64 -7.35 -42.26 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.93 Total: 8.26 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -2.40 Total: 1.92 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.26 Total: -61.76 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.16 Total: -13.64 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.91 -7.35 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753629873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.203 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds