Wall clock time and date at job start Tue Mar 31 2020 04:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00094 * 2 1 4 4 H 1.48497 * 109.47162 * 271.88927 * 3 2 1 5 5 H 1.48507 * 109.47184 * 31.88576 * 3 2 1 6 6 H 1.48499 * 109.47295 * 151.88765 * 3 2 1 7 7 C 1.38810 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00323 * 340.05397 * 7 2 1 9 9 N 1.36942 * 120.00162 * 160.05645 * 7 2 1 10 10 C 1.47155 * 120.97487 * 333.74081 * 9 7 2 11 11 C 1.53300 * 108.38164 * 230.51650 * 10 9 7 12 12 O 1.42966 * 109.22120 * 307.69846 * 11 10 9 13 13 C 1.42964 * 114.16471 * 62.58180 * 12 11 10 14 14 H 1.09003 * 109.51103 * 57.39956 * 13 12 11 15 15 C 1.53002 * 109.51071 * 177.49355 * 13 12 11 16 16 N 1.46505 * 109.47325 * 299.99980 * 15 13 12 17 17 C 1.34771 * 120.00008 * 179.97438 * 16 15 13 18 18 O 1.21283 * 119.99959 * 0.02562 * 17 16 15 19 19 C 1.50707 * 119.99821 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.46663 * 180.02562 * 19 17 16 21 21 C 1.50707 * 109.46663 * 179.97438 * 20 19 17 22 22 C 1.38392 * 120.00092 * 125.00453 * 21 20 19 23 23 N 1.32117 * 119.99890 * 180.27568 * 22 21 20 24 24 C 1.32157 * 119.99873 * 359.48763 * 23 22 21 25 25 C 1.38341 * 120.00354 * 0.51294 * 24 23 22 26 26 N 1.32123 * 120.00139 * 305.02008 * 21 20 19 27 27 C 1.47145 * 120.98452 * 153.72290 * 9 7 2 28 28 H 0.97003 * 120.00639 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.68075 * 110.79814 * 10 9 7 30 30 H 1.08993 * 109.71474 * 350.25677 * 10 9 7 31 31 H 1.09001 * 109.51220 * 187.77950 * 11 10 9 32 32 H 1.08990 * 109.51510 * 67.62270 * 11 10 9 33 33 H 1.08998 * 109.46711 * 180.02562 * 15 13 12 34 34 H 1.09001 * 109.47097 * 60.00083 * 15 13 12 35 35 H 0.96997 * 119.99701 * 0.02562 * 16 15 13 36 36 H 1.08994 * 109.46830 * 60.00290 * 19 17 16 37 37 H 1.09001 * 109.47117 * 300.00193 * 19 17 16 38 38 H 1.09004 * 109.47641 * 60.00498 * 20 19 17 39 39 H 1.08999 * 109.47719 * 300.00167 * 20 19 17 40 40 H 1.07999 * 119.99967 * 359.97438 * 22 21 20 41 41 H 1.08002 * 119.99920 * 180.24933 * 24 23 22 42 42 H 1.07994 * 120.00270 * 179.72452 * 25 24 23 43 43 H 1.08996 * 109.68182 * 9.75711 * 27 9 7 44 44 H 1.09002 * 109.67628 * 249.20653 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4577 2.0695 -1.3993 5 1 1.4681 2.6409 0.7396 6 1 3.5671 1.4290 0.6597 7 6 2.0102 -1.2021 0.0005 8 1 1.5188 -2.1093 0.3200 9 7 3.3180 -1.2379 -0.4040 10 6 3.8470 -0.2387 -1.3458 11 6 4.5670 -0.9771 -2.4801 12 8 5.5167 -1.8876 -1.9206 13 6 4.9368 -2.9154 -1.1135 14 1 4.2112 -3.4755 -1.7032 15 6 6.0353 -3.8607 -0.6229 16 7 6.7087 -4.4663 -1.7744 17 6 7.7179 -5.3388 -1.5827 18 8 8.0683 -5.6228 -0.4569 19 6 8.4109 -5.9614 -2.7674 20 6 9.5092 -6.9067 -2.2766 21 6 10.2018 -7.5298 -3.4612 22 6 11.5754 -7.4249 -3.5936 23 7 12.1819 -7.9664 -4.6349 24 6 11.4781 -8.6170 -5.5449 25 6 10.1051 -8.7218 -5.4126 26 7 9.4977 -8.1758 -4.3736 27 6 4.2358 -2.2763 0.0906 28 1 -0.4851 0.8400 -0.0004 29 1 4.5495 0.4161 -0.8302 30 1 3.0271 0.3517 -1.7546 31 1 5.0836 -0.2561 -3.1136 32 1 3.8394 -1.5295 -3.0744 33 1 5.5924 -4.6441 -0.0080 34 1 6.7597 -3.3002 -0.0318 35 1 6.4286 -4.2388 -2.6748 36 1 8.8534 -5.1778 -3.3824 37 1 7.6868 -6.5220 -3.3586 38 1 9.0663 -7.6903 -1.6618 39 1 10.2334 -6.3465 -1.6852 40 1 12.1510 -6.8962 -2.8482 41 1 11.9744 -9.0631 -6.3941 42 1 9.5294 -9.2496 -6.1586 43 1 3.6728 -3.0356 0.6333 44 1 4.9772 -1.8265 0.7510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753655559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:39 Heat of formation + Delta-G solvation = -9.168539 kcal Electronic energy + Delta-G solvation = -25898.490400 eV Core-core repulsion = 22044.895369 eV Total energy + Delta-G solvation = -3853.595031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51591 -39.83309 -38.74551 -35.44346 -35.02747 -34.45549 -33.86880 -31.82157 -31.41762 -30.62526 -27.90889 -26.58235 -25.35502 -24.80986 -23.21053 -22.68597 -21.80549 -20.61007 -19.85192 -18.03938 -17.51164 -17.26136 -16.97401 -16.44272 -16.04508 -15.92048 -15.73368 -15.53098 -15.10871 -14.38175 -14.29387 -14.14843 -13.88616 -13.77059 -13.58613 -13.32621 -12.80013 -12.53744 -12.44630 -12.34983 -12.00138 -11.94260 -11.75834 -11.67201 -11.37921 -11.28133 -10.90213 -10.47545 -10.33466 -10.00520 -9.85654 -9.62643 -9.58887 -9.47931 -9.46701 -9.05221 -8.64402 -7.09628 -6.03778 -3.41695 0.32760 0.70078 2.59777 3.07223 3.23532 3.28722 3.42532 3.45245 3.61163 3.84704 3.98318 4.04852 4.33217 4.43796 4.56509 4.67560 4.71099 4.79068 4.94488 5.03278 5.05346 5.18236 5.27231 5.29983 5.33720 5.54602 5.60915 5.69673 5.70828 5.76687 5.83191 5.94431 5.96637 6.07951 6.14127 6.38315 6.43062 6.45515 6.64935 6.83662 7.34670 7.47729 7.52853 7.79195 8.17718 8.21527 8.79104 9.59996 9.95500 11.11702 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034373 B = 0.002001 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.395870 B =13990.541848 C =14139.447430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 0.885 3.115 4 H -0.288 1.288 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.089 0.911 9 N -0.607 5.607 10 C 0.088 3.912 11 C 0.050 3.950 12 O -0.386 6.386 13 C 0.062 3.938 14 H 0.065 0.935 15 C 0.130 3.870 16 N -0.720 5.720 17 C 0.512 3.488 18 O -0.547 6.547 19 C -0.132 4.132 20 C -0.051 4.051 21 C 0.086 3.914 22 C 0.053 3.947 23 N -0.437 5.437 24 C 0.039 3.961 25 C 0.055 3.945 26 N -0.436 5.436 27 C 0.125 3.875 28 H 0.264 0.736 29 H 0.035 0.965 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.404 0.596 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.171 0.829 41 H 0.169 0.831 42 H 0.170 0.830 43 H 0.074 0.926 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.674 -14.746 -11.522 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.175 4.175 3 Si 0.715 3.285 4 H -0.216 1.216 5 H -0.230 1.230 6 H -0.196 1.196 7 C -0.391 4.391 8 H 0.106 0.894 9 N -0.332 5.332 10 C -0.037 4.037 11 C -0.028 4.028 12 O -0.305 6.305 13 C 0.003 3.997 14 H 0.082 0.918 15 C 0.006 3.994 16 N -0.371 5.371 17 C 0.298 3.702 18 O -0.425 6.425 19 C -0.173 4.173 20 C -0.090 4.090 21 C -0.055 4.055 22 C -0.107 4.107 23 N -0.151 5.151 24 C -0.121 4.121 25 C -0.105 4.105 26 N -0.152 5.152 27 C -0.002 4.002 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.239 0.761 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.188 0.812 41 H 0.186 0.814 42 H 0.188 0.812 43 H 0.093 0.907 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 20.932 -14.826 -10.707 27.796 hybrid contribution -0.107 1.175 -0.550 1.301 sum 20.826 -13.652 -11.256 27.327 Atomic orbital electron populations 1.69815 1.05660 1.26703 1.52680 1.25250 0.95270 0.97646 0.99381 0.86957 0.79945 0.84477 0.77089 1.21581 1.22961 1.19559 1.18913 0.84061 0.94972 1.41179 0.89367 1.44348 1.08346 1.31120 1.49366 1.22036 0.97710 0.92729 0.91245 1.23059 0.91922 0.92207 0.95619 1.87800 1.34017 1.41742 1.66984 1.22863 0.93870 0.88544 0.94469 0.91752 1.21415 0.94534 0.95132 0.88292 1.45932 1.35637 1.44862 1.10682 1.20558 0.79882 0.78946 0.90775 1.90708 1.64801 1.61894 1.25099 1.21551 0.98842 0.99752 0.97112 1.20264 0.97479 0.98693 0.92518 1.22369 0.92511 0.94780 0.95815 1.23700 0.93112 0.97587 0.96256 1.68464 1.39668 1.05587 1.01408 1.23782 0.92999 0.96762 0.98536 1.23816 0.93900 0.96850 0.95923 1.68286 1.39698 1.05835 1.01336 1.21477 0.93063 0.92549 0.93130 0.92615 0.94736 0.90053 0.89559 0.92986 0.89938 0.90687 0.76122 0.88987 0.87851 0.88556 0.88825 0.81225 0.81390 0.81247 0.90728 0.94723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.24 13.97 55.49 0.78 -26.47 16 2 C 0.02 0.68 5.26 -17.43 -0.09 0.58 16 3 Si 0.88 22.00 24.28 -169.99 -4.13 17.87 16 4 H -0.29 -6.82 6.58 56.52 0.37 -6.44 16 5 H -0.30 -7.65 7.11 56.52 0.40 -7.24 16 6 H -0.27 -6.69 6.54 56.52 0.37 -6.32 16 7 C -0.26 -7.19 10.10 -15.06 -0.15 -7.34 16 8 H 0.09 2.56 8.06 -52.48 -0.42 2.13 16 9 N -0.61 -14.10 2.84 -171.83 -0.49 -14.59 16 10 C 0.09 1.87 4.38 -3.53 -0.02 1.86 16 11 C 0.05 0.85 6.99 37.31 0.26 1.11 16 12 O -0.39 -6.39 10.13 -35.23 -0.36 -6.74 16 13 C 0.06 0.98 2.87 -26.58 -0.08 0.90 16 14 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 15 C 0.13 1.77 5.37 -4.04 -0.02 1.74 16 16 N -0.72 -8.37 5.45 -60.29 -0.33 -8.70 16 17 C 0.51 6.01 7.83 -10.98 -0.09 5.92 16 18 O -0.55 -8.30 15.98 5.55 0.09 -8.21 16 19 C -0.13 -1.10 5.56 -27.88 -0.16 -1.25 16 20 C -0.05 -0.41 4.92 -27.88 -0.14 -0.55 16 21 C 0.09 0.70 6.18 -82.41 -0.51 0.19 16 22 C 0.05 0.41 10.85 -17.37 -0.19 0.22 16 23 N -0.44 -3.70 10.50 -13.06 -0.14 -3.84 16 24 C 0.04 0.24 11.22 -17.37 -0.20 0.05 16 25 C 0.06 0.35 11.22 -17.37 -0.20 0.15 16 26 N -0.44 -3.75 10.05 -9.29 -0.09 -3.84 16 27 C 0.12 2.37 6.02 -3.54 -0.02 2.35 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.03 0.75 6.86 -51.93 -0.36 0.39 16 30 H 0.08 1.86 4.61 -51.93 -0.24 1.62 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.40 4.05 8.35 -40.82 -0.34 3.71 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.81 7.96 -51.93 -0.41 0.40 16 38 H 0.10 0.86 8.10 -51.93 -0.42 0.44 16 39 H 0.09 0.69 7.85 -51.93 -0.41 0.28 16 40 H 0.17 0.91 7.96 -52.49 -0.42 0.49 16 41 H 0.17 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.07 1.37 7.96 -51.93 -0.41 0.96 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 361.32 15.07 5.44 5.44 Total: -1.00 -34.40 361.32 -7.24 -41.63 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.43 Total: 1.50 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -1.58 Total: 5.94 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.27 Total: -57.43 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.27 Total: -14.96 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.13 Total: 17.87 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.40 -7.24 -41.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753655559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.466 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds