Wall clock time and date at job start Tue Mar 31 2020 05:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46842 * 2 1 4 4 C 1.53000 * 109.46976 * 120.00066 * 2 1 3 5 5 O 1.42893 * 109.47488 * 65.00088 * 4 2 1 6 6 C 1.42901 * 114.00257 * 179.97438 * 5 4 2 7 7 H 1.09002 * 110.88609 * 29.29857 * 6 5 4 8 8 C 1.55154 * 111.00560 * 265.41778 * 6 5 4 9 9 C 1.54325 * 102.94404 * 277.39156 * 8 6 5 10 10 N 1.47018 * 107.26892 * 337.80495 * 9 8 6 11 11 S 1.65604 * 125.64636 * 178.99011 * 10 9 8 12 12 O 1.42108 * 106.39868 * 203.51663 * 11 10 9 13 13 O 1.42091 * 106.40195 * 336.43092 * 11 10 9 14 14 N 1.65599 * 107.22091 * 89.97717 * 11 10 9 15 15 C 1.46502 * 120.00054 * 89.99462 * 14 11 10 16 16 C 1.46500 * 119.99875 * 270.00277 * 14 11 10 17 17 C 1.50695 * 109.47234 * 94.99396 * 16 14 11 18 18 H 1.07992 * 120.00291 * 0.02562 * 17 16 14 19 19 C 1.37887 * 119.99573 * 180.02562 * 17 16 14 20 20 N 1.31512 * 120.00036 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99715 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46988 * 59.99708 * 21 19 17 23 23 H 1.48498 * 109.46777 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46899 * 300.00027 * 21 19 17 25 25 C 1.47423 * 108.70681 * 358.94202 * 10 9 8 26 26 H 1.09002 * 109.46979 * 300.00013 * 1 2 3 27 27 H 1.08997 * 109.47329 * 60.00118 * 1 2 3 28 28 H 1.08998 * 109.46917 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46979 * 239.99987 * 2 1 3 30 30 H 1.09003 * 109.46425 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47062 * 300.00045 * 3 2 1 32 32 H 1.08993 * 109.47202 * 60.00054 * 3 2 1 33 33 H 1.08996 * 109.46906 * 304.99670 * 4 2 1 34 34 H 1.09007 * 109.46720 * 185.00402 * 4 2 1 35 35 H 1.09011 * 110.72022 * 35.75399 * 8 6 5 36 36 H 1.09000 * 110.72279 * 159.02027 * 8 6 5 37 37 H 1.08992 * 109.88412 * 97.22414 * 9 8 6 38 38 H 1.08999 * 109.87974 * 218.39079 * 9 8 6 39 39 H 1.08999 * 109.46955 * 90.00575 * 15 14 11 40 40 H 1.08994 * 109.46807 * 210.00028 * 15 14 11 41 41 H 1.08999 * 109.47536 * 330.00297 * 15 14 11 42 42 H 1.08996 * 109.46856 * 215.00431 * 16 14 11 43 43 H 1.09004 * 109.46866 * 334.99331 * 16 14 11 44 44 H 0.97003 * 119.99392 * 179.97438 * 20 19 17 45 45 H 1.08998 * 110.36740 * 265.29591 * 25 10 9 46 46 H 1.08994 * 110.37022 * 142.96739 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6620 -2.0981 1.1921 6 6 2.0924 -2.8663 2.3176 7 1 2.1599 -2.2439 3.2099 8 6 3.4443 -3.5698 2.0266 9 6 3.0161 -4.8356 1.2544 10 7 1.6102 -5.0993 1.5940 11 16 0.6895 -6.3396 0.9971 12 8 -0.6653 -5.9279 1.1183 13 8 1.2790 -6.7180 -0.2391 14 7 0.8800 -7.6279 2.0199 15 6 -0.0226 -7.7967 3.1615 16 6 1.9512 -8.5988 1.7833 17 6 3.1571 -8.2270 2.6071 18 1 3.1283 -7.3550 3.2435 19 6 4.2973 -9.0003 2.5482 20 7 4.3321 -10.0624 1.7735 21 14 5.7918 -8.5398 3.5698 22 1 5.4282 -8.5459 5.0096 23 1 6.8781 -9.5233 3.3289 24 1 6.2574 -7.1839 3.1826 25 6 1.1562 -4.0775 2.5549 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6054 -0.2617 2.1369 34 1 3.1264 -0.6443 1.2952 35 1 4.0825 -2.9383 1.4083 36 1 3.9480 -3.8367 2.9556 37 1 3.1130 -4.6661 0.1821 38 1 3.6351 -5.6807 1.5557 39 1 -0.8813 -8.3965 2.8601 40 1 0.5058 -8.2998 3.9711 41 1 -0.3639 -6.8193 3.5025 42 1 1.6092 -9.5938 2.0682 43 1 2.2180 -8.5951 0.7265 44 1 5.1344 -10.6061 1.7318 45 1 1.2614 -4.4438 3.5761 46 1 0.1209 -3.8018 2.3546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151004726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:57 Heat of formation + Delta-G solvation = -129.310316 kcal Electronic energy + Delta-G solvation = -26865.059436 eV Core-core repulsion = 23109.405868 eV Total energy + Delta-G solvation = -3755.653569 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.18611 -36.96301 -36.57847 -35.43860 -35.13378 -34.65818 -32.48321 -30.03129 -28.61670 -27.75480 -27.32859 -26.00004 -25.05384 -22.47216 -22.03200 -20.97895 -20.38732 -18.41032 -17.31449 -17.18132 -16.70953 -16.31020 -15.94357 -15.44957 -15.02887 -14.54152 -14.47146 -14.20250 -13.72987 -13.56199 -13.24912 -13.09367 -12.92042 -12.78349 -12.39967 -12.33911 -12.23877 -12.16371 -11.67190 -11.63918 -11.45935 -11.38983 -11.17626 -11.15681 -11.11061 -11.06212 -11.00307 -10.79618 -10.75755 -10.60842 -10.49844 -10.09404 -9.78681 -9.57899 -8.53876 -8.47379 -8.01712 -6.11423 -4.18169 1.29727 3.23779 3.29743 3.30504 3.50459 3.57811 4.21404 4.35019 4.53586 4.62334 4.67637 4.78973 4.95707 5.03310 5.17012 5.22497 5.26056 5.29618 5.39549 5.48547 5.50595 5.59751 5.65202 5.67277 5.74847 5.78637 5.79525 5.88160 5.95398 6.09075 6.11195 6.18946 6.21917 6.27559 6.42328 6.52520 6.60753 6.83696 7.23999 7.35483 7.45335 7.66399 7.85698 8.15576 8.86414 9.47266 10.96600 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015493 B = 0.004220 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.842817 B = 6633.405873 C = 7752.540674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.145 4.145 4 C 0.065 3.935 5 O -0.367 6.367 6 C 0.078 3.922 7 H 0.078 0.922 8 C -0.149 4.149 9 C 0.126 3.874 10 N -1.010 6.010 11 S 2.803 3.197 12 O -0.997 6.997 13 O -0.974 6.974 14 N -0.998 5.998 15 C 0.107 3.893 16 C 0.244 3.756 17 C -0.540 4.540 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.124 3.876 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.037 0.963 43 H 0.051 0.949 44 H 0.265 0.735 45 H 0.076 0.924 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.865 18.515 2.500 19.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.012 4.012 5 O -0.286 6.286 6 C 0.019 3.981 7 H 0.096 0.904 8 C -0.188 4.188 9 C 0.001 3.999 10 N -0.849 5.849 11 S 2.812 3.188 12 O -0.981 6.981 13 O -0.958 6.958 14 N -0.840 5.840 15 C -0.040 4.040 16 C 0.122 3.878 17 C -0.579 4.579 18 H 0.081 0.919 19 C -0.139 4.139 20 N -0.527 5.527 21 Si 0.722 3.278 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.002 4.002 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.095 0.905 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.446 18.192 1.455 18.784 hybrid contribution 1.428 0.188 1.242 1.902 sum -3.018 18.380 2.697 18.820 Atomic orbital electron populations 1.21793 0.94539 1.02741 1.01182 1.21105 0.96848 0.95448 0.98145 1.21781 1.01001 0.95372 1.02076 1.22614 0.98387 0.82345 0.97865 1.87980 1.77769 1.19618 1.43194 1.23246 0.94071 0.92056 0.88764 0.90424 1.23135 0.97040 0.97100 1.01498 1.21624 0.81341 0.97752 0.99200 1.58992 1.23501 1.43218 1.59199 1.01245 0.72206 0.71769 0.73573 1.93525 1.34153 1.82847 1.87573 1.93564 1.78758 1.82274 1.41206 1.57740 1.42753 1.41198 1.42282 1.21202 0.92549 1.00594 0.89615 1.19213 0.83041 0.87446 0.98138 1.21515 0.97788 1.11965 1.26620 0.91937 1.24970 0.98649 0.94879 0.95430 1.69927 1.29036 1.15774 1.37977 0.86633 0.82269 0.78375 0.80556 1.20274 1.21207 1.20058 1.22013 0.98879 0.86396 0.92907 0.93019 0.92918 0.91552 0.90268 0.92582 0.92110 0.92628 0.93483 0.93466 0.90259 0.89835 0.91718 0.89677 0.93771 0.90877 0.93021 0.94469 0.93125 0.92515 0.90549 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.09 37.16 0.34 -1.05 16 2 C -0.10 -0.91 3.16 -90.62 -0.29 -1.19 16 3 C -0.14 -1.03 9.19 37.16 0.34 -0.69 16 4 C 0.06 0.64 5.18 37.16 0.19 0.84 16 5 O -0.37 -4.84 9.69 -35.23 -0.34 -5.18 16 6 C 0.08 0.96 3.52 -24.58 -0.09 0.87 16 7 H 0.08 0.73 7.86 -51.93 -0.41 0.32 16 8 C -0.15 -1.93 6.69 -24.90 -0.17 -2.09 16 9 C 0.13 2.17 6.99 -3.07 -0.02 2.15 16 10 N -1.01 -18.16 3.76 -111.43 -0.42 -18.58 16 11 S 2.80 59.33 6.31 -107.50 -0.68 58.65 16 12 O -1.00 -21.53 16.54 -57.17 -0.95 -22.48 16 13 O -0.97 -23.90 16.27 -57.17 -0.93 -24.83 16 14 N -1.00 -21.33 3.23 -123.06 -0.40 -21.72 16 15 C 0.11 1.89 10.31 59.85 0.62 2.51 16 16 C 0.24 6.15 5.41 -5.20 -0.03 6.12 16 17 C -0.54 -14.02 8.93 -34.44 -0.31 -14.33 16 18 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 21 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 C 0.12 1.78 6.84 -2.53 -0.02 1.76 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.77 7.82 -51.93 -0.41 0.36 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.41 8.11 -51.93 -0.42 -0.01 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.64 7.68 -51.93 -0.40 1.24 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 41 H 0.05 0.79 7.79 -51.93 -0.40 0.39 16 42 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 43 H 0.05 1.41 6.92 -51.93 -0.36 1.05 16 44 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.08 1.23 7.78 -51.93 -0.40 0.82 16 LS Contribution 384.66 15.07 5.80 5.80 Total: -1.00 -32.29 384.66 -9.98 -42.28 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -8.26 Total: -1.13 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 0.48 Total: -3.49 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: -0.08 Total: -64.94 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -2.22 Total: -52.49 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 59.33 SS G_CDS: -0.68 Total: 58.65 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.29 -9.98 -42.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151004726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.035 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds