Wall clock time and date at job start Tue Mar 31 2020 05:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46842 * 2 1 4 4 C 1.53000 * 109.46976 * 120.00066 * 2 1 3 5 5 O 1.42893 * 109.47488 * 65.00088 * 4 2 1 6 6 C 1.42901 * 114.00257 * 179.97438 * 5 4 2 7 7 H 1.09002 * 110.88609 * 29.29857 * 6 5 4 8 8 C 1.55154 * 111.00560 * 265.41778 * 6 5 4 9 9 C 1.54325 * 102.94404 * 277.39156 * 8 6 5 10 10 N 1.47018 * 107.26892 * 337.80495 * 9 8 6 11 11 S 1.65604 * 125.64636 * 178.99011 * 10 9 8 12 12 O 1.42108 * 106.39868 * 203.51663 * 11 10 9 13 13 O 1.42091 * 106.40195 * 336.43092 * 11 10 9 14 14 N 1.65599 * 107.22091 * 89.97717 * 11 10 9 15 15 C 1.46502 * 120.00054 * 89.99462 * 14 11 10 16 16 C 1.46500 * 119.99875 * 270.00277 * 14 11 10 17 17 C 1.50695 * 109.47234 * 94.99396 * 16 14 11 18 18 H 1.07992 * 120.00291 * 0.02562 * 17 16 14 19 19 C 1.37887 * 119.99573 * 180.02562 * 17 16 14 20 20 N 1.31512 * 120.00036 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99715 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46988 * 59.99708 * 21 19 17 23 23 H 1.48498 * 109.46777 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46899 * 300.00027 * 21 19 17 25 25 C 1.47423 * 108.70681 * 358.94202 * 10 9 8 26 26 H 1.09002 * 109.46979 * 300.00013 * 1 2 3 27 27 H 1.08997 * 109.47329 * 60.00118 * 1 2 3 28 28 H 1.08998 * 109.46917 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46979 * 239.99987 * 2 1 3 30 30 H 1.09003 * 109.46425 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47062 * 300.00045 * 3 2 1 32 32 H 1.08993 * 109.47202 * 60.00054 * 3 2 1 33 33 H 1.08996 * 109.46906 * 304.99670 * 4 2 1 34 34 H 1.09007 * 109.46720 * 185.00402 * 4 2 1 35 35 H 1.09011 * 110.72022 * 35.75399 * 8 6 5 36 36 H 1.09000 * 110.72279 * 159.02027 * 8 6 5 37 37 H 1.08992 * 109.88412 * 97.22414 * 9 8 6 38 38 H 1.08999 * 109.87974 * 218.39079 * 9 8 6 39 39 H 1.08999 * 109.46955 * 90.00575 * 15 14 11 40 40 H 1.08994 * 109.46807 * 210.00028 * 15 14 11 41 41 H 1.08999 * 109.47536 * 330.00297 * 15 14 11 42 42 H 1.08996 * 109.46856 * 215.00431 * 16 14 11 43 43 H 1.09004 * 109.46866 * 334.99331 * 16 14 11 44 44 H 0.97003 * 119.99392 * 179.97438 * 20 19 17 45 45 H 1.08998 * 110.36740 * 265.29591 * 25 10 9 46 46 H 1.08994 * 110.37022 * 142.96739 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6620 -2.0981 1.1921 6 6 2.0924 -2.8663 2.3176 7 1 2.1599 -2.2439 3.2099 8 6 3.4443 -3.5698 2.0266 9 6 3.0161 -4.8356 1.2544 10 7 1.6102 -5.0993 1.5940 11 16 0.6895 -6.3396 0.9971 12 8 -0.6653 -5.9279 1.1183 13 8 1.2790 -6.7180 -0.2391 14 7 0.8800 -7.6279 2.0199 15 6 -0.0226 -7.7967 3.1615 16 6 1.9512 -8.5988 1.7833 17 6 3.1571 -8.2270 2.6071 18 1 3.1283 -7.3550 3.2435 19 6 4.2973 -9.0003 2.5482 20 7 4.3321 -10.0624 1.7735 21 14 5.7918 -8.5398 3.5698 22 1 5.4282 -8.5459 5.0096 23 1 6.8781 -9.5233 3.3289 24 1 6.2574 -7.1839 3.1826 25 6 1.1562 -4.0775 2.5549 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6054 -0.2617 2.1369 34 1 3.1264 -0.6443 1.2952 35 1 4.0825 -2.9383 1.4083 36 1 3.9480 -3.8367 2.9556 37 1 3.1130 -4.6661 0.1821 38 1 3.6351 -5.6807 1.5557 39 1 -0.8813 -8.3965 2.8601 40 1 0.5058 -8.2998 3.9711 41 1 -0.3639 -6.8193 3.5025 42 1 1.6092 -9.5938 2.0682 43 1 2.2180 -8.5951 0.7265 44 1 5.1344 -10.6061 1.7318 45 1 1.2614 -4.4438 3.5761 46 1 0.1209 -3.8018 2.3546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151004726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:56 Heat of formation + Delta-G solvation = -151.788110 kcal Electronic energy + Delta-G solvation = -26866.034147 eV Core-core repulsion = 23109.405868 eV Total energy + Delta-G solvation = -3756.628279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.19657 -38.36044 -37.94163 -37.22078 -36.93166 -35.51718 -34.47971 -31.21723 -29.83944 -29.56353 -27.98915 -26.79113 -26.74310 -24.26010 -23.44804 -22.00909 -21.10707 -19.98026 -18.94540 -18.66182 -18.24536 -17.97259 -17.11438 -16.71609 -16.46125 -15.97269 -15.65539 -15.32281 -15.04716 -14.94292 -14.54711 -14.40608 -14.10562 -13.96537 -13.86715 -13.66266 -13.42870 -13.37891 -13.19628 -13.01524 -12.98644 -12.91530 -12.63473 -12.55483 -12.45398 -12.35462 -12.30572 -11.96375 -11.93107 -11.78704 -11.74094 -11.68364 -11.40406 -10.57137 -10.47531 -9.92123 -9.75772 -8.15870 -6.30535 -0.37155 1.44935 1.47316 1.54971 1.98438 2.43877 2.55143 2.70279 3.15399 3.22315 3.58946 3.78563 3.97657 4.03615 4.08394 4.15005 4.23950 4.37403 4.50123 4.58910 4.64465 4.68272 4.69727 4.74666 4.78110 4.83004 4.83405 4.92208 4.97438 5.02406 5.03749 5.08967 5.15987 5.20381 5.24888 5.26038 5.41710 5.43783 5.46270 5.53481 5.74912 5.93931 6.09883 6.41367 6.81124 7.39582 8.92484 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015493 B = 0.004220 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.842817 B = 6633.405873 C = 7752.540674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 C -0.139 4.139 4 C 0.060 3.940 5 O -0.395 6.395 6 C 0.085 3.915 7 H 0.119 0.881 8 C -0.138 4.138 9 C 0.120 3.880 10 N -1.012 6.012 11 S 2.813 3.187 12 O -1.003 7.003 13 O -1.017 7.017 14 N -1.003 6.003 15 C 0.099 3.901 16 C 0.258 3.742 17 C -0.540 4.540 18 H 0.075 0.925 19 C 0.008 3.992 20 N -0.932 5.932 21 Si 0.963 3.037 22 H -0.264 1.264 23 H -0.290 1.290 24 H -0.261 1.261 25 C 0.112 3.888 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.020 0.980 43 H 0.014 0.986 44 H 0.265 0.735 45 H 0.101 0.899 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.141 21.414 5.010 22.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.196 4.196 4 C -0.016 4.016 5 O -0.314 6.314 6 C 0.026 3.974 7 H 0.136 0.864 8 C -0.177 4.177 9 C -0.006 4.006 10 N -0.853 5.853 11 S 2.823 3.177 12 O -0.987 6.987 13 O -1.002 7.002 14 N -0.845 5.845 15 C -0.047 4.047 16 C 0.134 3.866 17 C -0.579 4.579 18 H 0.093 0.907 19 C -0.191 4.191 20 N -0.571 5.571 21 Si 0.787 3.213 22 H -0.189 1.189 23 H -0.216 1.216 24 H -0.185 1.185 25 C -0.013 4.013 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.038 0.962 43 H 0.032 0.968 44 H 0.074 0.926 45 H 0.119 0.881 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.762 21.112 3.981 21.811 hybrid contribution 1.111 -0.676 0.415 1.365 sum -2.651 20.436 4.395 21.071 Atomic orbital electron populations 1.21773 0.94967 1.01237 1.02125 1.21146 0.96530 0.96748 0.97433 1.21734 1.01356 0.93720 1.02822 1.22810 0.99281 0.80878 0.98649 1.87968 1.78163 1.21325 1.43979 1.23291 0.92365 0.91718 0.90056 0.86353 1.23135 0.97894 0.94879 1.01768 1.21697 0.80552 0.99181 0.99130 1.58723 1.23695 1.42930 1.59933 1.00660 0.72045 0.72044 0.72947 1.93505 1.34665 1.82946 1.87593 1.93502 1.79480 1.83246 1.43931 1.57636 1.42492 1.40835 1.43502 1.21463 0.92227 1.02512 0.88483 1.18779 0.84269 0.87604 0.95942 1.21777 0.97876 1.12036 1.26237 0.90661 1.25899 1.01951 0.94693 0.96582 1.70081 1.29955 1.17191 1.39895 0.85532 0.78065 0.78452 0.79230 1.18913 1.21616 1.18503 1.22413 0.99319 0.86485 0.93082 0.91821 0.92281 0.94187 0.92088 0.91970 0.91736 0.91536 0.91676 0.92265 0.88777 0.88058 0.93332 0.92231 0.92704 0.90477 0.90346 0.96202 0.96837 0.92588 0.88117 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.09 71.98 0.65 -1.93 16 2 C -0.10 -1.70 3.16 -10.79 -0.03 -1.74 16 3 C -0.14 -1.63 9.19 71.98 0.66 -0.97 16 4 C 0.06 1.02 5.18 71.98 0.37 1.39 16 5 O -0.39 -9.60 9.69 -148.98 -1.44 -11.04 16 6 C 0.08 1.80 3.52 31.99 0.11 1.91 16 7 H 0.12 1.60 7.86 -2.39 -0.02 1.58 16 8 C -0.14 -3.17 6.69 31.78 0.21 -2.96 16 9 C 0.12 4.08 6.99 86.73 0.61 4.69 16 10 N -1.01 -35.84 3.76 -506.45 -1.90 -37.74 16 11 S 2.81 121.18 6.31 -56.49 -0.36 120.82 16 12 O -1.00 -43.26 16.54 -128.00 -2.12 -45.37 16 13 O -1.02 -52.40 16.27 -128.00 -2.08 -54.48 16 14 N -1.00 -43.35 3.23 -543.24 -1.75 -45.11 16 15 C 0.10 3.37 10.31 127.77 1.32 4.69 16 16 C 0.26 13.46 5.41 85.63 0.46 13.93 16 17 C -0.54 -28.23 8.93 25.60 0.23 -28.00 16 18 H 0.08 3.66 7.81 -2.91 -0.02 3.64 16 19 C 0.01 0.43 5.46 84.66 0.46 0.89 16 20 N -0.93 -54.49 13.29 21.45 0.28 -54.20 16 21 Si 0.96 41.19 29.54 68.60 2.03 43.22 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 24 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 25 C 0.11 2.93 6.84 86.86 0.59 3.52 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.04 0.92 7.82 -2.39 -0.02 0.90 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.88 8.11 -2.39 -0.02 0.86 16 34 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 2.31 7.68 -2.39 -0.02 2.29 16 39 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 2.57 8.07 -2.39 -0.02 2.55 16 41 H 0.08 2.25 7.79 -2.39 -0.02 2.23 16 42 H 0.02 1.09 8.11 -2.39 -0.02 1.07 16 43 H 0.01 0.80 6.92 -2.38 -0.02 0.79 16 44 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 45 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.08 2.19 7.78 -2.39 -0.02 2.17 16 Total: -1.00 -71.93 384.66 -0.76 -72.70 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.93 Total: 15.79 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 5.65 Total: -4.58 kcal Atomic # 7 Polarization: -133.68 SS G_CDS: -3.37 Total: -137.05 kcal Atomic # 8 Polarization: -105.25 SS G_CDS: -5.64 Total: -110.90 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: 121.18 SS G_CDS: -0.36 Total: 120.82 kcal Total: -71.93 -0.76 -72.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151004726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.093 kcal (2) G-P(sol) polarization free energy of solvation -71.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds