Wall clock time and date at job start Tue Mar 31 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46703 * 2 1 4 4 H 1.09001 * 109.47178 * 54.99882 * 3 2 1 5 5 O 1.42898 * 109.47091 * 294.99186 * 3 2 1 6 6 C 1.53003 * 109.46628 * 174.99802 * 3 2 1 7 7 N 1.46898 * 109.46854 * 182.64804 * 6 3 2 8 8 C 1.46894 * 111.00176 * 200.07035 * 7 6 3 9 9 C 1.53238 * 109.34539 * 172.74843 * 8 7 6 10 10 N 1.47086 * 108.51738 * 53.83020 * 9 8 7 11 11 S 1.65600 * 120.87746 * 128.84271 * 10 9 8 12 12 O 1.42102 * 104.27801 * 26.04817 * 11 10 9 13 13 O 1.42100 * 104.27405 * 153.90765 * 11 10 9 14 14 C 1.81402 * 104.44752 * 269.97552 * 11 10 9 15 15 C 1.53000 * 109.46868 * 180.02562 * 14 11 10 16 16 C 1.50708 * 109.46574 * 180.02562 * 15 14 11 17 17 H 1.07993 * 120.00046 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99521 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99902 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 119.99724 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47240 * 90.00163 * 20 18 16 22 22 H 1.48503 * 109.47100 * 209.99686 * 20 18 16 23 23 H 1.48497 * 109.47346 * 329.99769 * 20 18 16 24 24 C 1.47083 * 118.23914 * 308.81587 * 10 9 8 25 25 C 1.46903 * 110.99664 * 75.77129 * 7 6 3 26 26 H 1.09007 * 109.47182 * 60.00505 * 1 2 3 27 27 H 1.08998 * 109.47151 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47817 * 300.00568 * 1 2 3 29 29 H 1.08999 * 109.47219 * 239.99742 * 2 1 3 30 30 H 1.08995 * 109.46924 * 119.99809 * 2 1 3 31 31 H 0.96697 * 114.00348 * 300.01134 * 5 3 2 32 32 H 1.09005 * 109.47221 * 62.65313 * 6 3 2 33 33 H 1.08997 * 109.47200 * 302.65150 * 6 3 2 34 34 H 1.09003 * 109.49913 * 292.71204 * 8 7 6 35 35 H 1.09003 * 109.49176 * 52.78574 * 8 7 6 36 36 H 1.09007 * 109.62737 * 294.12710 * 9 8 7 37 37 H 1.08998 * 109.63453 * 173.54215 * 9 8 7 38 38 H 1.09005 * 109.47080 * 300.00110 * 14 11 10 39 39 H 1.08997 * 109.47223 * 59.99963 * 14 11 10 40 40 H 1.09005 * 109.46913 * 299.99665 * 15 14 11 41 41 H 1.09001 * 109.47405 * 60.00126 * 15 14 11 42 42 H 0.97005 * 119.99605 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.62905 * 291.48105 * 24 10 9 44 44 H 1.08994 * 109.78631 * 170.98752 * 24 10 9 45 45 H 1.08997 * 109.49253 * 307.20938 * 25 7 6 46 46 H 1.08998 * 109.49478 * 67.29943 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 8 1.6620 2.0814 -1.2211 6 6 3.5648 1.4444 0.1258 7 7 4.0491 2.8298 0.1896 8 6 5.4728 2.9065 -0.1640 9 6 5.8929 4.3769 -0.2622 10 7 5.5262 5.0523 0.9919 11 16 6.6360 5.9533 1.8279 12 8 7.5625 6.3759 0.8368 13 8 5.8522 6.8953 2.5473 14 6 7.4139 4.7725 2.9643 15 6 8.4711 5.4931 3.8034 16 6 9.1177 4.5120 4.7470 17 1 8.8056 3.4781 4.7484 18 6 10.1079 4.9344 5.6086 19 7 10.4883 6.1933 5.6065 20 14 10.9089 3.7185 6.7787 21 1 12.0890 3.1022 6.1208 22 1 11.3426 4.4279 8.0092 23 1 9.9321 2.6588 7.1366 24 6 4.1476 4.9067 1.4835 25 6 3.7964 3.4153 1.5129 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8898 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0141 1.6542 -2.0139 32 1 4.0014 0.9464 -0.7400 33 1 3.8551 0.9158 1.0337 34 1 6.0657 2.4094 0.6038 35 1 5.6361 2.4167 -1.1240 36 1 5.3765 4.8502 -1.0975 37 1 6.9708 4.4408 -0.4109 38 1 6.6556 4.3481 3.6223 39 1 7.8861 3.9743 2.3917 40 1 9.2295 5.9179 3.1456 41 1 7.9985 6.2911 4.3761 42 1 11.1847 6.4906 6.2129 43 1 3.4636 5.4308 0.8160 44 1 4.0685 5.3214 2.4883 45 1 2.7438 3.2946 1.7691 46 1 4.4126 2.9113 2.2574 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182408253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:43 Heat of formation + Delta-G solvation = -127.090869 kcal Electronic energy + Delta-G solvation = -26014.207133 eV Core-core repulsion = 22258.649806 eV Total energy + Delta-G solvation = -3755.557326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.47210 -37.72349 -36.65851 -35.45162 -34.44125 -33.90323 -33.05713 -31.27186 -31.17501 -29.15555 -25.96483 -25.58481 -23.96990 -22.96214 -21.76027 -21.51888 -20.42008 -18.52580 -17.64441 -16.69846 -16.52624 -16.29764 -15.90883 -15.51645 -15.43235 -15.11319 -14.95045 -14.57657 -14.52985 -14.32640 -13.70084 -13.56568 -13.40275 -12.62000 -12.55152 -12.51937 -12.40865 -12.02471 -11.99260 -11.77577 -11.67213 -11.57954 -11.44758 -11.34152 -11.25373 -11.10618 -10.98506 -10.93358 -10.79788 -10.43471 -10.40108 -10.17722 -9.77712 -9.36206 -8.86559 -8.52594 -8.41434 -6.14577 -4.20315 0.74966 2.99954 3.23632 3.29942 3.32472 3.50646 4.22153 4.29065 4.33899 4.37672 4.53970 4.56372 4.69829 4.70275 4.83222 4.95976 5.02593 5.13976 5.20342 5.20485 5.27665 5.28878 5.36921 5.37823 5.45605 5.50960 5.55160 5.58995 5.62045 5.70104 5.84075 5.87546 5.89501 6.00739 6.08693 6.46632 6.64640 6.81079 6.82693 7.27984 7.34247 7.47234 7.78074 8.15388 8.82929 9.44402 10.96433 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016166 B = 0.003078 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.601074 B = 9094.141559 C =10189.900487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.157 4.157 3 C 0.113 3.887 4 H 0.097 0.903 5 O -0.546 6.546 6 C 0.021 3.979 7 N -0.525 5.525 8 C 0.040 3.960 9 C 0.129 3.871 10 N -1.008 6.008 11 S 2.591 3.409 12 O -0.963 6.963 13 O -0.963 6.963 14 C -0.589 4.589 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.129 3.871 25 C 0.038 3.962 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.369 0.631 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.265 0.735 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.139 -12.701 -13.028 24.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C 0.053 3.947 4 H 0.115 0.885 5 O -0.350 6.350 6 C -0.108 4.108 7 N -0.250 5.250 8 C -0.090 4.090 9 C 0.003 3.997 10 N -0.845 5.845 11 S 2.690 3.310 12 O -0.954 6.954 13 O -0.953 6.953 14 C -0.723 4.723 15 C -0.011 4.011 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C 0.003 3.997 25 C -0.091 4.091 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.215 0.785 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.112 0.888 45 H 0.102 0.898 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.453 -10.925 -13.032 24.368 hybrid contribution 1.343 -2.299 1.221 2.929 sum -16.110 -13.224 -11.810 23.956 Atomic orbital electron populations 1.21684 0.94955 1.01379 1.02508 1.22234 0.97320 0.97325 1.02648 1.21933 0.92267 0.92101 0.88416 0.88527 1.86623 1.76246 1.57112 1.15062 1.22892 0.96701 0.89597 1.01561 1.61786 1.17016 1.17565 1.28598 1.22551 0.87961 0.97413 1.01030 1.21418 1.00886 0.90987 0.86372 1.58055 1.22336 1.69345 1.34743 1.05712 0.73763 0.76267 0.75271 1.93534 1.63887 1.80204 1.57747 1.93535 1.68624 1.58641 1.74547 1.30506 1.11888 1.15607 1.14256 1.18959 0.91502 0.96053 0.94540 1.20992 1.20084 0.95243 1.19663 0.92162 1.25072 0.96676 0.95422 0.97325 1.69958 1.29905 1.14956 1.37963 0.86470 0.79608 0.80892 0.80309 1.20466 1.20958 1.19809 1.21402 0.82547 0.95103 1.00616 1.22579 1.01414 0.95734 0.89382 0.91998 0.92945 0.92718 0.91681 0.91208 0.78479 0.90588 0.93724 0.94137 0.89794 0.90549 0.88841 0.86512 0.86522 0.94875 0.94859 0.92499 0.90510 0.88831 0.89752 0.94073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.81 37.16 0.36 -0.53 16 2 C -0.16 -0.89 5.61 -26.73 -0.15 -1.04 16 3 C 0.11 0.81 3.04 -26.73 -0.08 0.72 16 4 H 0.10 0.78 6.75 -51.93 -0.35 0.43 16 5 O -0.55 -4.59 12.79 -35.23 -0.45 -5.04 16 6 C 0.02 0.16 4.65 -3.82 -0.02 0.14 16 7 N -0.53 -5.07 4.47 -234.32 -1.05 -6.12 16 8 C 0.04 0.39 5.59 -3.70 -0.02 0.37 16 9 C 0.13 1.53 6.47 -3.60 -0.02 1.51 16 10 N -1.01 -14.08 3.26 -113.23 -0.37 -14.45 16 11 S 2.59 47.29 5.42 -107.50 -0.58 46.71 16 12 O -0.96 -20.08 16.79 -57.54 -0.97 -21.05 16 13 O -0.96 -20.15 16.79 -57.54 -0.97 -21.12 16 14 C -0.59 -11.31 6.12 37.16 0.23 -11.09 16 15 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 16 C -0.52 -14.38 9.11 -34.43 -0.31 -14.69 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 20 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 C 0.13 1.57 6.46 -3.60 -0.02 1.55 16 25 C 0.04 0.39 5.45 -3.70 -0.02 0.37 16 26 H 0.06 0.41 7.82 -51.92 -0.41 0.00 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.37 1.94 9.05 45.56 0.41 2.36 16 32 H 0.08 0.48 7.77 -51.93 -0.40 0.08 16 33 H 0.04 0.34 8.00 -51.93 -0.42 -0.08 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.66 7.90 -51.93 -0.41 0.25 16 36 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.09 1.11 7.19 -51.93 -0.37 0.74 16 38 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 39 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 1.14 7.20 -51.93 -0.37 0.77 16 45 H 0.08 0.74 6.65 -51.93 -0.35 0.39 16 46 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -35.22 378.48 -10.54 -45.76 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.28 Total: -0.21 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -0.29 Total: -20.57 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: -0.68 Total: -46.32 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -2.38 Total: -47.21 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 47.29 SS G_CDS: -0.58 Total: 46.71 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.22 -10.54 -45.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182408253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.331 kcal (2) G-P(sol) polarization free energy of solvation -35.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds