Wall clock time and date at job start Tue Mar 31 2020 05:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46703 * 2 1 4 4 H 1.09001 * 109.47178 * 54.99882 * 3 2 1 5 5 O 1.42898 * 109.47091 * 294.99186 * 3 2 1 6 6 C 1.53003 * 109.46628 * 174.99802 * 3 2 1 7 7 N 1.46898 * 109.46854 * 182.64804 * 6 3 2 8 8 C 1.46894 * 111.00176 * 200.07035 * 7 6 3 9 9 C 1.53238 * 109.34539 * 172.74843 * 8 7 6 10 10 N 1.47086 * 108.51738 * 53.83020 * 9 8 7 11 11 S 1.65600 * 120.87746 * 128.84271 * 10 9 8 12 12 O 1.42102 * 104.27801 * 26.04817 * 11 10 9 13 13 O 1.42100 * 104.27405 * 153.90765 * 11 10 9 14 14 C 1.81402 * 104.44752 * 269.97552 * 11 10 9 15 15 C 1.53000 * 109.46868 * 180.02562 * 14 11 10 16 16 C 1.50708 * 109.46574 * 180.02562 * 15 14 11 17 17 H 1.07993 * 120.00046 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99521 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99902 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 119.99724 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47240 * 90.00163 * 20 18 16 22 22 H 1.48503 * 109.47100 * 209.99686 * 20 18 16 23 23 H 1.48497 * 109.47346 * 329.99769 * 20 18 16 24 24 C 1.47083 * 118.23914 * 308.81587 * 10 9 8 25 25 C 1.46903 * 110.99664 * 75.77129 * 7 6 3 26 26 H 1.09007 * 109.47182 * 60.00505 * 1 2 3 27 27 H 1.08998 * 109.47151 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47817 * 300.00568 * 1 2 3 29 29 H 1.08999 * 109.47219 * 239.99742 * 2 1 3 30 30 H 1.08995 * 109.46924 * 119.99809 * 2 1 3 31 31 H 0.96697 * 114.00348 * 300.01134 * 5 3 2 32 32 H 1.09005 * 109.47221 * 62.65313 * 6 3 2 33 33 H 1.08997 * 109.47200 * 302.65150 * 6 3 2 34 34 H 1.09003 * 109.49913 * 292.71204 * 8 7 6 35 35 H 1.09003 * 109.49176 * 52.78574 * 8 7 6 36 36 H 1.09007 * 109.62737 * 294.12710 * 9 8 7 37 37 H 1.08998 * 109.63453 * 173.54215 * 9 8 7 38 38 H 1.09005 * 109.47080 * 300.00110 * 14 11 10 39 39 H 1.08997 * 109.47223 * 59.99963 * 14 11 10 40 40 H 1.09005 * 109.46913 * 299.99665 * 15 14 11 41 41 H 1.09001 * 109.47405 * 60.00126 * 15 14 11 42 42 H 0.97005 * 119.99605 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.62905 * 291.48105 * 24 10 9 44 44 H 1.08994 * 109.78631 * 170.98752 * 24 10 9 45 45 H 1.08997 * 109.49253 * 307.20938 * 25 7 6 46 46 H 1.08998 * 109.49478 * 67.29943 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 8 1.6620 2.0814 -1.2211 6 6 3.5648 1.4444 0.1258 7 7 4.0491 2.8298 0.1896 8 6 5.4728 2.9065 -0.1640 9 6 5.8929 4.3769 -0.2622 10 7 5.5262 5.0523 0.9919 11 16 6.6360 5.9533 1.8279 12 8 7.5625 6.3759 0.8368 13 8 5.8522 6.8953 2.5473 14 6 7.4139 4.7725 2.9643 15 6 8.4711 5.4931 3.8034 16 6 9.1177 4.5120 4.7470 17 1 8.8056 3.4781 4.7484 18 6 10.1079 4.9344 5.6086 19 7 10.4883 6.1933 5.6065 20 14 10.9089 3.7185 6.7787 21 1 12.0890 3.1022 6.1208 22 1 11.3426 4.4279 8.0092 23 1 9.9321 2.6588 7.1366 24 6 4.1476 4.9067 1.4835 25 6 3.7964 3.4153 1.5129 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8898 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0141 1.6542 -2.0139 32 1 4.0014 0.9464 -0.7400 33 1 3.8551 0.9158 1.0337 34 1 6.0657 2.4094 0.6038 35 1 5.6361 2.4167 -1.1240 36 1 5.3765 4.8502 -1.0975 37 1 6.9708 4.4408 -0.4109 38 1 6.6556 4.3481 3.6223 39 1 7.8861 3.9743 2.3917 40 1 9.2295 5.9179 3.1456 41 1 7.9985 6.2911 4.3761 42 1 11.1847 6.4906 6.2129 43 1 3.4636 5.4308 0.8160 44 1 4.0685 5.3214 2.4883 45 1 2.7438 3.2946 1.7691 46 1 4.4126 2.9113 2.2574 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182408253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:42 Heat of formation + Delta-G solvation = -155.685100 kcal Electronic energy + Delta-G solvation = -26015.447072 eV Core-core repulsion = 22258.649806 eV Total energy + Delta-G solvation = -3756.797265 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.22228 -38.40793 -38.25168 -37.04308 -35.92296 -35.32092 -33.56179 -33.14973 -32.14807 -29.84222 -27.63099 -26.70701 -24.83848 -23.79446 -23.39355 -22.06806 -21.44737 -19.83169 -19.14327 -18.38063 -17.39228 -17.14870 -17.10662 -16.87169 -16.55583 -16.09604 -15.90913 -15.76451 -15.61530 -15.22451 -15.10590 -14.52545 -14.38379 -14.21414 -13.76894 -13.54723 -13.51190 -13.23085 -12.99115 -12.95390 -12.91109 -12.82477 -12.81320 -12.66933 -12.28181 -12.25020 -12.17612 -12.12419 -11.91591 -11.78790 -11.68775 -11.50867 -11.16309 -10.72083 -10.66851 -10.02730 -9.16934 -8.27999 -6.42479 -0.74390 1.39136 1.41120 1.52200 1.69881 2.36200 2.80968 2.85283 3.05212 3.13495 3.58972 3.72922 3.79462 3.99444 4.00712 4.12718 4.17607 4.19228 4.25707 4.29116 4.35118 4.46569 4.51549 4.68297 4.70593 4.73721 4.76462 4.79919 4.91621 4.93608 4.99246 5.08645 5.12541 5.15183 5.24092 5.24409 5.37092 5.44402 5.59520 5.65734 6.03646 6.08020 6.13739 6.70964 7.05708 7.27804 8.84292 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016166 B = 0.003078 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.601074 B = 9094.141559 C =10189.900487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.151 4.151 3 C 0.116 3.884 4 H 0.085 0.915 5 O -0.566 6.566 6 C 0.024 3.976 7 N -0.533 5.533 8 C 0.044 3.956 9 C 0.121 3.879 10 N -0.998 5.998 11 S 2.613 3.387 12 O -0.992 6.992 13 O -0.994 6.994 14 C -0.584 4.584 15 C 0.022 3.978 16 C -0.539 4.539 17 H 0.075 0.925 18 C -0.004 4.004 19 N -0.934 5.934 20 Si 0.975 3.025 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.257 1.257 24 C 0.122 3.878 25 C 0.042 3.958 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.382 0.618 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.039 0.961 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.006 0.994 41 H 0.005 0.995 42 H 0.268 0.732 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.966 -15.651 -13.526 27.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.189 4.189 3 C 0.057 3.943 4 H 0.103 0.897 5 O -0.372 6.372 6 C -0.104 4.104 7 N -0.258 5.258 8 C -0.086 4.086 9 C -0.004 4.004 10 N -0.838 5.838 11 S 2.712 3.288 12 O -0.983 6.983 13 O -0.984 6.984 14 C -0.716 4.716 15 C -0.017 4.017 16 C -0.578 4.578 17 H 0.093 0.907 18 C -0.203 4.203 19 N -0.574 5.574 20 Si 0.798 3.202 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.181 1.181 24 C -0.003 4.003 25 C -0.088 4.088 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.230 0.770 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.127 0.873 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.024 0.976 41 H 0.024 0.976 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.108 0.892 45 H 0.117 0.883 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -18.284 -13.895 -13.539 26.659 hybrid contribution 1.510 -1.364 1.277 2.403 sum -16.774 -15.259 -12.262 25.779 Atomic orbital electron populations 1.21682 0.95413 1.01647 1.01833 1.22174 0.96826 0.96432 1.03464 1.21882 0.92033 0.92682 0.87730 0.89749 1.86589 1.76686 1.57936 1.15995 1.22930 0.96761 0.88326 1.02410 1.61784 1.16860 1.19071 1.28065 1.22545 0.88062 0.95615 1.02351 1.21682 1.01033 0.92506 0.85207 1.57692 1.22086 1.69103 1.34872 1.04753 0.73492 0.75974 0.74618 1.93488 1.65362 1.80981 1.58425 1.93488 1.69240 1.60196 1.75462 1.30377 1.10878 1.15964 1.14424 1.18811 0.92478 0.95804 0.94618 1.21495 1.20216 0.96181 1.19898 0.90714 1.26135 0.97427 0.97357 0.99352 1.70107 1.30775 1.17309 1.39172 0.85300 0.78812 0.78459 0.77611 1.19531 1.20807 1.18133 1.21614 0.81180 0.97005 1.00483 1.22540 1.02314 0.94004 0.89931 0.92795 0.92209 0.93287 0.90505 0.90694 0.77005 0.88998 0.93425 0.94277 0.87345 0.89893 0.89087 0.84463 0.84348 0.97598 0.97636 0.92348 0.90116 0.89205 0.88257 0.94094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.81 71.98 0.71 -0.83 16 2 C -0.15 -1.33 5.61 30.60 0.17 -1.16 16 3 C 0.12 1.39 3.04 30.60 0.09 1.48 16 4 H 0.08 1.21 6.75 -2.39 -0.02 1.19 16 5 O -0.57 -8.29 12.79 -148.98 -1.90 -10.20 16 6 C 0.02 0.28 4.65 86.30 0.40 0.68 16 7 N -0.53 -8.84 4.47 -895.25 -4.00 -12.84 16 8 C 0.04 0.73 5.59 86.38 0.48 1.21 16 9 C 0.12 2.66 6.47 86.35 0.56 3.21 16 10 N -1.00 -26.86 3.26 -512.14 -1.67 -28.53 16 11 S 2.61 96.20 5.42 -56.49 -0.31 95.90 16 12 O -0.99 -42.08 16.79 -127.65 -2.14 -44.22 16 13 O -0.99 -42.46 16.79 -127.65 -2.14 -44.60 16 14 C -0.58 -22.29 6.12 71.98 0.44 -21.85 16 15 C 0.02 1.15 4.98 29.85 0.15 1.30 16 16 C -0.54 -29.89 9.11 25.60 0.23 -29.66 16 17 H 0.07 3.82 7.74 -2.91 -0.02 3.79 16 18 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 19 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 20 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 24 C 0.12 2.82 6.46 86.35 0.56 3.38 16 25 C 0.04 0.76 5.45 86.38 0.47 1.23 16 26 H 0.05 0.64 7.82 -2.38 -0.02 0.62 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.38 3.09 9.05 -74.06 -0.67 2.42 16 32 H 0.09 0.82 7.77 -2.38 -0.02 0.80 16 33 H 0.05 0.56 8.00 -2.39 -0.02 0.55 16 34 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.11 1.31 7.90 -2.39 -0.02 1.29 16 36 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.09 2.06 7.19 -2.39 -0.02 2.04 16 38 H 0.14 4.62 8.14 -2.39 -0.02 4.60 16 39 H 0.14 4.62 8.14 -2.39 -0.02 4.60 16 40 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 41 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 43 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.09 2.14 7.20 -2.39 -0.02 2.12 16 45 H 0.10 1.52 6.65 -2.39 -0.02 1.51 16 46 H 0.04 0.75 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -76.73 378.48 -4.85 -81.58 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.28 Total: 15.31 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 4.73 Total: -40.79 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -5.39 Total: -98.10 kcal Atomic # 8 Polarization: -92.83 SS G_CDS: -6.19 Total: -99.02 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 96.20 SS G_CDS: -0.31 Total: 95.90 kcal Total: -76.73 -4.85 -81.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182408253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.106 kcal (2) G-P(sol) polarization free energy of solvation -76.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds