Wall clock time and date at job start Tue Mar 31 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 O 1.42898 * 109.47319 * 65.00075 * 3 2 1 6 6 C 1.53002 * 109.46817 * 184.99998 * 3 2 1 7 7 N 1.46906 * 109.46937 * 180.02562 * 6 3 2 8 8 C 1.46908 * 110.99347 * 294.30102 * 7 6 3 9 9 C 1.53239 * 109.33501 * 172.74897 * 8 7 6 10 10 N 1.47084 * 108.52508 * 53.82686 * 9 8 7 11 11 S 1.65596 * 120.87957 * 128.83631 * 10 9 8 12 12 O 1.42100 * 104.28185 * 26.05094 * 11 10 9 13 13 O 1.42105 * 104.27711 * 153.91028 * 11 10 9 14 14 C 1.81407 * 104.44910 * 269.97759 * 11 10 9 15 15 C 1.52994 * 109.46898 * 180.02562 * 14 11 10 16 16 C 1.50706 * 109.46896 * 180.02562 * 15 14 11 17 17 H 1.08001 * 119.99801 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99839 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00024 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99654 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47121 * 90.00085 * 20 18 16 22 22 H 1.48507 * 109.46863 * 209.99724 * 20 18 16 23 23 H 1.48497 * 109.47233 * 329.99794 * 20 18 16 24 24 C 1.47081 * 118.23602 * 308.81479 * 10 9 8 25 25 C 1.46893 * 111.00002 * 170.00309 * 7 6 3 26 26 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 27 27 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 28 28 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 31 31 H 0.96698 * 113.99898 * 59.99520 * 5 3 2 32 32 H 1.09002 * 109.47075 * 299.99262 * 6 3 2 33 33 H 1.08996 * 109.47407 * 60.00219 * 6 3 2 34 34 H 1.08997 * 109.49330 * 292.70095 * 8 7 6 35 35 H 1.08997 * 109.49584 * 52.79032 * 8 7 6 36 36 H 1.09002 * 109.62582 * 294.11730 * 9 8 7 37 37 H 1.08996 * 109.78862 * 173.63536 * 9 8 7 38 38 H 1.09000 * 109.46815 * 300.00212 * 14 11 10 39 39 H 1.09004 * 109.46758 * 60.00146 * 14 11 10 40 40 H 1.09000 * 109.47426 * 299.99673 * 15 14 11 41 41 H 1.09004 * 109.47431 * 60.00393 * 15 14 11 42 42 H 0.96998 * 119.99942 * 179.97438 * 19 18 16 43 43 H 1.08990 * 109.62936 * 291.47466 * 24 10 9 44 44 H 1.08995 * 109.78591 * 170.98584 * 24 10 9 45 45 H 1.09008 * 109.48945 * 307.20682 * 25 7 6 46 46 H 1.08995 * 109.49644 * 67.28770 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6621 2.0814 1.2210 6 6 3.5649 1.4442 -0.1257 7 7 4.0547 2.8292 -0.1251 8 6 3.5973 3.5497 -1.3209 9 6 3.9729 5.0301 -1.1958 10 7 5.4158 5.1250 -0.9263 11 16 6.3874 6.1096 -1.8366 12 8 5.5114 7.1207 -2.3158 13 8 7.4708 6.4276 -0.9737 14 6 6.9491 5.0548 -3.2014 15 6 7.8665 5.8600 -4.1239 16 6 8.3327 4.9839 -5.2581 17 1 8.0075 3.9555 -5.3149 18 6 9.1752 5.4949 -6.2225 19 7 9.5715 6.7469 -6.1530 20 14 9.7535 4.4087 -7.6279 21 1 8.7985 4.5139 -8.7602 22 1 11.0997 4.8503 -8.0731 23 1 9.8222 2.9985 -7.1677 24 6 5.9725 4.3225 0.1734 25 6 5.5182 2.8699 -0.0056 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.0142 1.6542 2.0138 32 1 3.9995 0.9052 0.7162 33 1 3.8533 0.9569 -1.0571 34 1 4.0745 3.1269 -2.2050 35 1 2.5152 3.4554 -1.4107 36 1 3.4165 5.4808 -0.3740 37 1 3.7390 5.5499 -2.1249 38 1 7.4961 4.2018 -2.7999 39 1 6.0864 4.7004 -3.7655 40 1 7.3199 6.7132 -4.5254 41 1 8.7293 6.2140 -3.5596 42 1 10.1645 7.1062 -6.8313 43 1 5.6083 4.7052 1.1267 44 1 7.0611 4.3711 0.1511 45 1 5.8291 2.2825 0.8584 46 1 5.9685 2.4565 -0.9080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182408278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:46 Heat of formation + Delta-G solvation = -126.274168 kcal Electronic energy + Delta-G solvation = -26052.934722 eV Core-core repulsion = 22297.412811 eV Total energy + Delta-G solvation = -3755.521912 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.50838 -37.70873 -36.65472 -35.44787 -34.43036 -33.90121 -33.06135 -31.27097 -31.17344 -29.13880 -25.98699 -25.58622 -23.99039 -22.96261 -21.77286 -21.48319 -20.40313 -18.52475 -17.64466 -16.69582 -16.50904 -16.30769 -15.91865 -15.51101 -15.48048 -15.10992 -14.93833 -14.57349 -14.52505 -14.28510 -13.76619 -13.55573 -13.40040 -12.62438 -12.52985 -12.47265 -12.40238 -12.06539 -12.00335 -11.77322 -11.69170 -11.57779 -11.46903 -11.34276 -11.25670 -11.10377 -10.98288 -10.89538 -10.76370 -10.42928 -10.39800 -10.15410 -9.77520 -9.36139 -8.86661 -8.52427 -8.41626 -6.14350 -4.20093 0.75340 3.00419 3.23861 3.30108 3.32622 3.51180 4.21964 4.29328 4.31506 4.37955 4.54031 4.56756 4.67808 4.69326 4.85342 4.96447 5.02230 5.13919 5.20431 5.20730 5.27249 5.30511 5.36601 5.37440 5.46563 5.51647 5.55368 5.59362 5.62823 5.70612 5.84419 5.87433 5.89117 6.01495 6.09086 6.46963 6.65142 6.81163 6.83007 7.28252 7.34528 7.46322 7.78298 8.15660 8.83159 9.44643 10.96687 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.003133 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.734232 B = 8935.592822 C =10066.435697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.156 4.156 3 C 0.109 3.891 4 H 0.098 0.902 5 O -0.546 6.546 6 C 0.021 3.979 7 N -0.525 5.525 8 C 0.037 3.963 9 C 0.130 3.870 10 N -1.008 6.008 11 S 2.591 3.409 12 O -0.963 6.963 13 O -0.963 6.963 14 C -0.589 4.589 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.129 3.871 25 C 0.039 3.961 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.370 0.630 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.040 0.960 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.265 0.735 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.081 -13.976 14.305 25.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C 0.050 3.950 4 H 0.116 0.884 5 O -0.350 6.350 6 C -0.107 4.107 7 N -0.249 5.249 8 C -0.092 4.092 9 C 0.004 3.996 10 N -0.845 5.845 11 S 2.690 3.310 12 O -0.953 6.953 13 O -0.954 6.954 14 C -0.723 4.723 15 C -0.011 4.011 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C 0.003 3.997 25 C -0.090 4.090 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.217 0.783 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.102 0.898 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.297 -12.255 14.450 24.352 hybrid contribution 1.048 -2.131 -1.548 2.835 sum -14.249 -14.386 12.902 24.009 Atomic orbital electron populations 1.21687 0.94937 1.01406 1.02516 1.22228 0.97328 0.97245 1.02676 1.21976 0.92223 0.92308 0.88515 0.88445 1.86614 1.76215 1.57107 1.15070 1.22878 0.96584 0.89862 1.01399 1.61811 1.10362 1.13227 1.39504 1.22580 1.00898 0.94819 0.90912 1.21406 0.80292 0.95270 1.02658 1.58055 1.17811 1.62838 1.45781 1.05713 0.73654 0.75673 0.75979 1.93535 1.64915 1.54721 1.82173 1.93534 1.55090 1.82638 1.64124 1.30505 1.10875 1.14590 1.16285 1.18957 0.93275 0.95077 0.93744 1.20993 1.29391 0.97482 1.08122 0.92162 1.25070 0.95982 0.95209 0.98219 1.69952 1.34152 1.13590 1.35096 0.86473 0.78189 0.80514 0.82118 1.20450 1.20961 1.19813 1.21400 0.98696 0.89169 0.90392 1.22541 0.87572 0.97608 1.01306 0.91980 0.92716 0.92921 0.91198 0.91641 0.78338 0.90455 0.93966 0.94155 0.89539 0.90497 0.88854 0.86524 0.86512 0.94870 0.94867 0.92497 0.90599 0.88831 0.89803 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.81 37.16 0.36 -0.53 16 2 C -0.16 -0.89 5.61 -26.73 -0.15 -1.04 16 3 C 0.11 0.78 2.84 -26.73 -0.08 0.70 16 4 H 0.10 0.78 6.40 -51.93 -0.33 0.45 16 5 O -0.55 -4.54 12.74 -35.23 -0.45 -4.99 16 6 C 0.02 0.16 4.62 -3.82 -0.02 0.14 16 7 N -0.52 -5.08 4.50 -234.31 -1.05 -6.13 16 8 C 0.04 0.38 5.46 -3.70 -0.02 0.36 16 9 C 0.13 1.59 6.47 -3.60 -0.02 1.57 16 10 N -1.01 -14.13 3.26 -113.23 -0.37 -14.50 16 11 S 2.59 47.40 5.42 -107.50 -0.58 46.82 16 12 O -0.96 -20.20 16.79 -57.54 -0.97 -21.16 16 13 O -0.96 -20.11 16.79 -57.54 -0.97 -21.08 16 14 C -0.59 -11.34 6.12 37.15 0.23 -11.11 16 15 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 16 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 20 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 C 0.13 1.54 6.46 -3.60 -0.02 1.51 16 25 C 0.04 0.38 5.62 -3.70 -0.02 0.36 16 26 H 0.06 0.41 7.82 -51.93 -0.41 0.00 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.37 1.96 9.05 45.56 0.41 2.38 16 32 H 0.08 0.49 7.97 -51.93 -0.41 0.08 16 33 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.79 6.16 -51.93 -0.32 0.47 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.15 7.19 -51.93 -0.37 0.78 16 38 H 0.12 2.03 8.14 -51.92 -0.42 1.60 16 39 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 1.11 7.20 -51.93 -0.37 0.74 16 45 H 0.08 0.66 7.99 -51.92 -0.41 0.25 16 46 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -35.17 377.86 -10.52 -45.69 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -7.26 Total: -0.10 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -0.29 Total: -20.61 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.69 Total: -46.41 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -2.38 Total: -47.24 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 47.40 SS G_CDS: -0.58 Total: 46.82 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.17 -10.52 -45.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182408278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.582 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds