Wall clock time and date at job start Tue Mar 31 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 O 1.42898 * 109.47319 * 65.00075 * 3 2 1 6 6 C 1.53002 * 109.46817 * 184.99998 * 3 2 1 7 7 N 1.46906 * 109.46937 * 180.02562 * 6 3 2 8 8 C 1.46908 * 110.99347 * 294.30102 * 7 6 3 9 9 C 1.53239 * 109.33501 * 172.74897 * 8 7 6 10 10 N 1.47084 * 108.52508 * 53.82686 * 9 8 7 11 11 S 1.65596 * 120.87957 * 128.83631 * 10 9 8 12 12 O 1.42100 * 104.28185 * 26.05094 * 11 10 9 13 13 O 1.42105 * 104.27711 * 153.91028 * 11 10 9 14 14 C 1.81407 * 104.44910 * 269.97759 * 11 10 9 15 15 C 1.52994 * 109.46898 * 180.02562 * 14 11 10 16 16 C 1.50706 * 109.46896 * 180.02562 * 15 14 11 17 17 H 1.08001 * 119.99801 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99839 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00024 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99654 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47121 * 90.00085 * 20 18 16 22 22 H 1.48507 * 109.46863 * 209.99724 * 20 18 16 23 23 H 1.48497 * 109.47233 * 329.99794 * 20 18 16 24 24 C 1.47081 * 118.23602 * 308.81479 * 10 9 8 25 25 C 1.46893 * 111.00002 * 170.00309 * 7 6 3 26 26 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 27 27 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 28 28 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 31 31 H 0.96698 * 113.99898 * 59.99520 * 5 3 2 32 32 H 1.09002 * 109.47075 * 299.99262 * 6 3 2 33 33 H 1.08996 * 109.47407 * 60.00219 * 6 3 2 34 34 H 1.08997 * 109.49330 * 292.70095 * 8 7 6 35 35 H 1.08997 * 109.49584 * 52.79032 * 8 7 6 36 36 H 1.09002 * 109.62582 * 294.11730 * 9 8 7 37 37 H 1.08996 * 109.78862 * 173.63536 * 9 8 7 38 38 H 1.09000 * 109.46815 * 300.00212 * 14 11 10 39 39 H 1.09004 * 109.46758 * 60.00146 * 14 11 10 40 40 H 1.09000 * 109.47426 * 299.99673 * 15 14 11 41 41 H 1.09004 * 109.47431 * 60.00393 * 15 14 11 42 42 H 0.96998 * 119.99942 * 179.97438 * 19 18 16 43 43 H 1.08990 * 109.62936 * 291.47466 * 24 10 9 44 44 H 1.08995 * 109.78591 * 170.98584 * 24 10 9 45 45 H 1.09008 * 109.48945 * 307.20682 * 25 7 6 46 46 H 1.08995 * 109.49644 * 67.28770 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6621 2.0814 1.2210 6 6 3.5649 1.4442 -0.1257 7 7 4.0547 2.8292 -0.1251 8 6 3.5973 3.5497 -1.3209 9 6 3.9729 5.0301 -1.1958 10 7 5.4158 5.1250 -0.9263 11 16 6.3874 6.1096 -1.8366 12 8 5.5114 7.1207 -2.3158 13 8 7.4708 6.4276 -0.9737 14 6 6.9491 5.0548 -3.2014 15 6 7.8665 5.8600 -4.1239 16 6 8.3327 4.9839 -5.2581 17 1 8.0075 3.9555 -5.3149 18 6 9.1752 5.4949 -6.2225 19 7 9.5715 6.7469 -6.1530 20 14 9.7535 4.4087 -7.6279 21 1 8.7985 4.5139 -8.7602 22 1 11.0997 4.8503 -8.0731 23 1 9.8222 2.9985 -7.1677 24 6 5.9725 4.3225 0.1734 25 6 5.5182 2.8699 -0.0056 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.0142 1.6542 2.0138 32 1 3.9995 0.9052 0.7162 33 1 3.8533 0.9569 -1.0571 34 1 4.0745 3.1269 -2.2050 35 1 2.5152 3.4554 -1.4107 36 1 3.4165 5.4808 -0.3740 37 1 3.7390 5.5499 -2.1249 38 1 7.4961 4.2018 -2.7999 39 1 6.0864 4.7004 -3.7655 40 1 7.3199 6.7132 -4.5254 41 1 8.7293 6.2140 -3.5596 42 1 10.1645 7.1062 -6.8313 43 1 5.6083 4.7052 1.1267 44 1 7.0611 4.3711 0.1511 45 1 5.8291 2.2825 0.8584 46 1 5.9685 2.4565 -0.9080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182408278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:45 Heat of formation + Delta-G solvation = -154.839829 kcal Electronic energy + Delta-G solvation = -26054.173422 eV Core-core repulsion = 22297.412811 eV Total energy + Delta-G solvation = -3756.760612 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.25842 -38.40153 -38.25159 -37.04327 -35.92425 -35.31177 -33.56488 -33.15153 -32.15368 -29.83059 -27.63183 -26.73367 -24.86297 -23.79964 -23.39347 -22.07020 -21.41924 -19.83445 -19.14548 -18.38350 -17.38491 -17.14888 -17.10588 -16.87445 -16.55678 -16.16714 -15.91457 -15.76827 -15.61190 -15.17965 -15.09740 -14.53941 -14.43277 -14.21089 -13.76958 -13.53741 -13.48998 -13.23086 -12.99533 -12.95483 -12.89924 -12.81846 -12.80568 -12.71950 -12.28784 -12.24939 -12.20809 -12.15685 -11.91780 -11.78826 -11.68691 -11.44754 -11.15501 -10.69726 -10.66963 -10.03547 -9.18305 -8.28029 -6.42551 -0.74446 1.39106 1.41117 1.52156 1.69819 2.36159 2.80939 2.85248 3.05186 3.13411 3.58830 3.71362 3.77981 3.99130 4.00679 4.11755 4.17406 4.18156 4.24497 4.29629 4.35097 4.45586 4.52151 4.67339 4.70432 4.74056 4.76025 4.80215 4.91644 4.93768 4.99235 5.08731 5.12346 5.14861 5.24039 5.24312 5.36622 5.44072 5.59475 5.65673 6.03623 6.07483 6.12890 6.70883 7.04595 7.27764 8.84292 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.003133 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.734232 B = 8935.592822 C =10066.435697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.150 4.150 3 C 0.113 3.887 4 H 0.086 0.914 5 O -0.565 6.565 6 C 0.024 3.976 7 N -0.532 5.532 8 C 0.041 3.959 9 C 0.123 3.877 10 N -0.998 5.998 11 S 2.613 3.387 12 O -0.994 6.994 13 O -0.992 6.992 14 C -0.585 4.585 15 C 0.022 3.978 16 C -0.539 4.539 17 H 0.075 0.925 18 C -0.004 4.004 19 N -0.934 5.934 20 Si 0.975 3.025 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.257 1.257 24 C 0.121 3.879 25 C 0.043 3.957 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.382 0.618 32 H 0.094 0.906 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.005 0.995 41 H 0.006 0.994 42 H 0.268 0.732 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.109 0.891 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.857 -16.939 14.723 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.189 4.189 3 C 0.053 3.947 4 H 0.104 0.896 5 O -0.371 6.371 6 C -0.104 4.104 7 N -0.256 5.256 8 C -0.089 4.089 9 C -0.002 4.002 10 N -0.838 5.838 11 S 2.712 3.288 12 O -0.984 6.984 13 O -0.982 6.982 14 C -0.717 4.717 15 C -0.017 4.017 16 C -0.578 4.578 17 H 0.093 0.907 18 C -0.202 4.202 19 N -0.574 5.574 20 Si 0.798 3.202 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.181 1.181 24 C -0.004 4.004 25 C -0.087 4.087 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.231 0.769 32 H 0.112 0.888 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.023 0.977 41 H 0.024 0.976 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.109 0.891 45 H 0.127 0.873 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -16.077 -15.238 14.876 26.683 hybrid contribution 1.215 -1.203 -1.567 2.319 sum -14.862 -16.441 13.309 25.852 Atomic orbital electron populations 1.21686 0.95394 1.01672 1.01842 1.22169 0.96834 0.96362 1.03487 1.21926 0.91962 0.92905 0.87863 0.89597 1.86583 1.76636 1.57901 1.15968 1.22921 0.96696 0.88587 1.02190 1.61812 1.10208 1.14619 1.38979 1.22531 1.01723 0.93270 0.91337 1.21612 0.78836 0.97083 1.02672 1.57693 1.18075 1.62619 1.45363 1.04754 0.73125 0.75470 0.75491 1.93488 1.65561 1.56487 1.82851 1.93488 1.56692 1.83370 1.64682 1.30378 1.10622 1.14604 1.16056 1.18809 0.93312 0.95062 0.94520 1.21496 1.29318 0.98335 1.08667 0.90724 1.26132 0.96125 0.96629 1.01360 1.70101 1.35098 1.15766 1.36401 0.85303 0.77565 0.78989 0.78339 1.19561 1.20778 1.18116 1.21670 0.98719 0.90383 0.89669 1.22536 0.87736 0.96028 1.02355 0.92748 0.93308 0.92192 0.90718 0.90442 0.76912 0.88818 0.93762 0.94208 0.88253 0.90092 0.89276 0.84369 0.84476 0.97653 0.97570 0.92339 0.89839 0.89060 0.87307 0.94320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.81 71.98 0.71 -0.84 16 2 C -0.15 -1.33 5.61 30.59 0.17 -1.16 16 3 C 0.11 1.34 2.84 30.59 0.09 1.43 16 4 H 0.09 1.21 6.40 -2.39 -0.02 1.20 16 5 O -0.56 -8.19 12.74 -148.98 -1.90 -10.09 16 6 C 0.02 0.28 4.62 86.30 0.40 0.68 16 7 N -0.53 -8.84 4.50 -895.22 -4.03 -12.87 16 8 C 0.04 0.76 5.46 86.38 0.47 1.23 16 9 C 0.12 2.87 6.47 86.35 0.56 3.43 16 10 N -1.00 -26.96 3.26 -512.16 -1.67 -28.63 16 11 S 2.61 96.45 5.42 -56.49 -0.31 96.15 16 12 O -0.99 -42.57 16.79 -127.65 -2.14 -44.72 16 13 O -0.99 -42.09 16.79 -127.65 -2.14 -44.24 16 14 C -0.58 -22.38 6.12 71.98 0.44 -21.94 16 15 C 0.02 1.15 4.98 29.85 0.15 1.30 16 16 C -0.54 -29.96 9.11 25.60 0.23 -29.73 16 17 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 18 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 19 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 20 Si 0.97 43.15 29.54 68.60 2.03 45.17 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 24 C 0.12 2.65 6.46 86.35 0.56 3.21 16 25 C 0.04 0.72 5.62 86.39 0.49 1.20 16 26 H 0.05 0.65 7.82 -2.39 -0.02 0.63 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.38 3.13 9.05 -74.06 -0.67 2.46 16 32 H 0.09 0.83 7.97 -2.39 -0.02 0.81 16 33 H 0.04 0.54 8.12 -2.39 -0.02 0.52 16 34 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 1.61 6.16 -2.39 -0.01 1.59 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.09 2.15 7.19 -2.39 -0.02 2.13 16 38 H 0.14 4.64 8.14 -2.39 -0.02 4.62 16 39 H 0.14 4.64 8.14 -2.39 -0.02 4.62 16 40 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 44 H 0.09 2.06 7.20 -2.39 -0.02 2.04 16 45 H 0.11 1.31 7.99 -2.38 -0.02 1.29 16 46 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -76.57 377.86 -4.87 -81.44 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.28 Total: 15.50 kcal Atomic # 6 Polarization: -45.65 SS G_CDS: 4.72 Total: -40.93 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -5.41 Total: -98.28 kcal Atomic # 8 Polarization: -92.86 SS G_CDS: -6.18 Total: -99.04 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 96.45 SS G_CDS: -0.31 Total: 96.15 kcal Total: -76.57 -4.87 -81.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182408278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.401 kcal (2) G-P(sol) polarization free energy of solvation -76.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds