Wall clock time and date at job start Tue Mar 31 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47646 * 2 1 4 4 N 1.46495 * 109.47384 * 175.95385 * 3 2 1 5 5 C 1.46501 * 119.99824 * 275.06597 * 4 3 2 6 6 C 1.52993 * 117.50187 * 9.71522 * 5 4 3 7 7 C 1.53001 * 117.49830 * 301.09007 * 5 4 3 8 8 S 1.65606 * 120.00229 * 95.06324 * 4 3 2 9 9 O 1.42098 * 106.39926 * 200.17873 * 8 4 3 10 10 O 1.42101 * 106.39996 * 333.09856 * 8 4 3 11 11 N 1.65599 * 107.21774 * 86.63790 * 8 4 3 12 12 C 1.46501 * 119.99848 * 275.11816 * 11 8 4 13 13 C 1.50701 * 109.47076 * 94.72228 * 12 11 8 14 14 H 1.07995 * 120.00188 * 4.90866 * 13 12 11 15 15 C 1.37876 * 119.99448 * 184.90920 * 13 12 11 16 16 N 1.31509 * 120.00573 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 119.99503 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47164 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47032 * 119.99950 * 17 15 13 20 20 H 1.48495 * 109.46799 * 239.99749 * 17 15 13 21 21 C 1.46496 * 119.99907 * 95.11242 * 11 8 4 22 22 C 1.53002 * 109.46796 * 95.00218 * 21 11 8 23 23 O 1.42899 * 109.47354 * 65.00264 * 22 21 11 24 24 C 1.42893 * 114.00318 * 180.02562 * 23 22 21 25 25 H 1.09004 * 109.46810 * 300.00129 * 1 2 3 26 26 H 1.09000 * 109.47295 * 59.99567 * 1 2 3 27 27 H 1.08997 * 109.47442 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46810 * 239.99871 * 2 1 3 29 29 H 1.09000 * 109.47295 * 120.00433 * 2 1 3 30 30 H 1.09005 * 109.47299 * 295.95490 * 3 2 1 31 31 H 1.09001 * 109.47098 * 55.95220 * 3 2 1 32 32 H 1.09004 * 115.54830 * 155.42680 * 5 4 3 33 33 H 1.09004 * 117.49796 * 0.02562 * 6 5 4 34 34 H 1.09004 * 117.50382 * 145.01684 * 6 5 4 35 35 H 1.08996 * 117.49893 * 214.97473 * 7 5 4 36 36 H 1.08994 * 117.49668 * 359.97438 * 7 5 4 37 37 H 1.09004 * 109.46758 * 214.71809 * 12 11 8 38 38 H 1.08999 * 109.47429 * 334.71953 * 12 11 8 39 39 H 0.96997 * 120.00388 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.47214 * 214.99919 * 21 11 8 41 41 H 1.08996 * 109.47585 * 335.00417 * 21 11 8 42 42 H 1.09005 * 109.47108 * 184.99919 * 22 21 11 43 43 H 1.08997 * 109.47411 * 304.99866 * 22 21 11 44 44 H 1.09000 * 109.47308 * 179.97438 * 24 23 22 45 45 H 1.08999 * 109.47225 * 299.99741 * 24 23 22 46 46 H 1.08999 * 109.47646 * 59.99263 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5018 1.4435 0.0975 5 6 4.1485 1.3618 1.4095 6 6 3.2613 1.0496 2.6162 7 6 3.8256 2.4590 2.4258 8 16 4.4232 1.5371 -1.2754 9 8 5.7120 1.0498 -0.9277 10 8 3.6394 0.9828 -2.3232 11 7 4.6109 3.1434 -1.6313 12 6 3.5841 3.8474 -2.4036 13 6 2.6274 4.5313 -1.4611 14 1 2.8140 4.5165 -0.3975 15 6 1.5140 5.1758 -1.9569 16 7 1.2870 5.1942 -3.2522 17 14 0.3277 6.0229 -0.7886 18 1 0.8060 5.8588 0.6076 19 1 0.2548 7.4687 -1.1196 20 1 -1.0203 5.4153 -0.9254 21 6 5.8036 3.8605 -1.1738 22 6 6.8534 3.8664 -2.2869 23 8 6.3639 4.6180 -3.3993 24 6 7.2727 4.6858 -4.5000 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.7372 1.9350 -0.9240 31 1 1.6188 1.9768 0.8515 32 1 5.1606 0.9570 1.4103 33 1 2.1965 0.9046 2.4339 34 1 3.6895 0.4391 3.4112 35 1 4.6251 2.7756 3.0956 36 1 3.1325 3.2418 2.1180 37 1 4.0577 4.5916 -3.0439 38 1 3.0386 3.1324 -3.0195 39 1 0.5039 5.6479 -3.6009 40 1 5.5361 4.8866 -0.9212 41 1 6.2107 3.3639 -0.2931 42 1 7.7724 4.3213 -1.9172 43 1 7.0557 2.8425 -2.6010 44 1 6.8273 5.2726 -5.3033 45 1 8.2006 5.1574 -4.1765 46 1 7.4833 3.6788 -4.8599 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336880786.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:21 Heat of formation + Delta-G solvation = -97.449438 kcal Electronic energy + Delta-G solvation = -27822.835192 eV Core-core repulsion = 24068.563215 eV Total energy + Delta-G solvation = -3754.271978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.18941 -37.70422 -36.69207 -35.29139 -35.16769 -34.26838 -32.54415 -31.44176 -29.44640 -26.73729 -25.80114 -25.60156 -22.78146 -22.32427 -21.88980 -21.52044 -20.71215 -18.34599 -17.46854 -16.93607 -16.45398 -15.95991 -15.84161 -15.58115 -14.90111 -14.69839 -14.47210 -14.35399 -14.13580 -13.48347 -13.34624 -13.03970 -12.62179 -12.23463 -12.02059 -11.96245 -11.87528 -11.72566 -11.60926 -11.50691 -11.40814 -11.29933 -11.21301 -11.07579 -11.04152 -10.86137 -10.63547 -10.58677 -10.41258 -10.29201 -10.11711 -9.97854 -9.67918 -9.26588 -8.45249 -8.36522 -7.93143 -6.03953 -4.09336 1.28129 3.25683 3.34284 3.35465 3.45596 3.99351 4.11962 4.20570 4.40515 4.79697 5.05940 5.09810 5.19431 5.25911 5.30879 5.38889 5.41163 5.45057 5.47394 5.60120 5.63776 5.70399 5.71507 5.75621 5.82475 5.93836 5.96292 6.02847 6.08707 6.15559 6.28452 6.35210 6.35837 6.41880 6.54094 6.67298 6.73935 7.04751 7.54079 7.57097 7.60631 7.80965 7.96074 8.26375 8.96603 9.55130 11.03711 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009234 B = 0.007611 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.469043 B = 3677.905194 C = 5314.445822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C 0.125 3.875 4 N -0.973 5.973 5 C 0.085 3.915 6 C -0.184 4.184 7 C -0.195 4.195 8 S 2.784 3.216 9 O -1.003 7.003 10 O -0.974 6.974 11 N -0.984 5.984 12 C 0.244 3.756 13 C -0.534 4.534 14 H 0.062 0.938 15 C 0.065 3.935 16 N -0.887 5.887 17 Si 0.887 3.113 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.136 3.864 22 C 0.044 3.956 23 O -0.369 6.369 24 C 0.031 3.969 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.135 0.865 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.262 0.738 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.083 0.917 45 H 0.034 0.966 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.417 -5.581 7.919 11.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C 0.000 4.000 4 N -0.807 5.807 5 C -0.023 4.023 6 C -0.223 4.223 7 C -0.234 4.234 8 S 2.794 3.206 9 O -0.988 6.988 10 O -0.958 6.958 11 N -0.824 5.824 12 C 0.123 3.877 13 C -0.573 4.573 14 H 0.080 0.920 15 C -0.138 4.138 16 N -0.525 5.525 17 Si 0.715 3.285 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C 0.009 3.991 22 C -0.035 4.035 23 O -0.287 6.287 24 C -0.066 4.066 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.152 0.848 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.102 0.898 45 H 0.052 0.948 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.445 -6.157 7.229 11.477 hybrid contribution -0.651 0.862 0.813 1.352 sum 5.795 -5.295 8.042 11.238 Atomic orbital electron populations 1.21686 0.95483 1.01302 1.02192 1.22042 0.96021 0.98008 1.02420 1.21335 0.78134 0.96081 1.04448 1.57604 1.15915 1.87832 1.19336 1.21410 0.97293 1.03396 0.80193 1.23286 1.00364 0.99292 0.99401 1.23400 1.04207 0.92797 1.03011 1.01848 0.72332 0.73669 0.72701 1.93491 1.40313 1.80181 1.84788 1.93579 1.71359 1.77120 1.53767 1.57695 1.28652 1.28761 1.67307 1.19288 0.84238 0.93383 0.90829 1.21614 1.07324 1.34467 0.93931 0.92021 1.24926 0.97677 0.96291 0.94907 1.69952 1.27996 1.43048 1.11517 0.86626 0.81138 0.79505 0.81227 1.19779 1.21078 1.20988 1.21060 0.84453 0.99688 0.93903 1.23106 0.96775 0.95118 0.88489 1.88101 1.42055 1.73366 1.25224 1.22703 0.93410 1.00284 0.90247 0.92944 0.92054 0.92942 0.91318 0.91988 0.88082 0.91031 0.84756 0.88068 0.88599 0.88578 0.87955 0.92820 0.93546 0.92804 0.89283 0.90101 0.93142 0.93545 0.89842 0.94789 0.94629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.15 -2.20 5.97 -26.73 -0.16 -2.36 16 3 C 0.13 2.17 4.60 -4.05 -0.02 2.15 16 4 N -0.97 -16.87 3.18 -107.30 -0.34 -17.21 16 5 C 0.08 1.22 6.40 -67.93 -0.43 0.78 16 6 C -0.18 -2.17 9.22 -26.73 -0.25 -2.42 16 7 C -0.19 -2.50 10.09 -26.73 -0.27 -2.77 16 8 S 2.78 56.52 6.01 -107.50 -0.65 55.88 16 9 O -1.00 -20.28 15.65 -57.17 -0.89 -21.17 16 10 O -0.97 -22.91 15.86 -57.17 -0.91 -23.82 16 11 N -0.98 -20.51 2.81 -115.66 -0.33 -20.84 16 12 C 0.24 6.10 5.28 -5.19 -0.03 6.07 16 13 C -0.53 -13.67 8.93 -34.44 -0.31 -13.98 16 14 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 17 Si 0.89 20.49 29.54 -169.99 -5.02 15.46 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.14 2.40 5.81 -4.04 -0.02 2.38 16 22 C 0.04 0.73 6.28 37.16 0.23 0.96 16 23 O -0.37 -6.86 9.02 -35.23 -0.32 -7.18 16 24 C 0.03 0.43 11.01 101.05 1.11 1.55 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 29 H 0.06 0.83 6.94 -51.93 -0.36 0.47 16 30 H 0.10 2.08 7.24 -51.93 -0.38 1.70 16 31 H 0.07 1.14 6.54 -51.93 -0.34 0.80 16 32 H 0.13 1.85 7.33 -51.93 -0.38 1.46 16 33 H 0.10 1.21 5.77 -51.93 -0.30 0.91 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.10 1.50 7.99 -51.93 -0.41 1.09 16 37 H 0.05 1.44 6.61 -51.93 -0.34 1.10 16 38 H 0.05 1.29 6.99 -51.93 -0.36 0.93 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.09 1.59 8.11 -51.93 -0.42 1.17 16 41 H 0.08 1.23 7.47 -51.93 -0.39 0.84 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 382.27 15.07 5.76 5.76 Total: -1.00 -31.26 382.27 -9.71 -40.97 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -7.88 Total: 4.29 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 0.13 Total: -7.62 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: 0.07 Total: -62.56 kcal Atomic # 8 Polarization: -50.05 SS G_CDS: -2.12 Total: -52.17 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 56.52 SS G_CDS: -0.65 Total: 55.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.26 -9.71 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336880786.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.484 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds