Wall clock time and date at job start Tue Mar 31 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47646 * 2 1 4 4 N 1.46495 * 109.47384 * 175.95385 * 3 2 1 5 5 C 1.46501 * 119.99824 * 275.06597 * 4 3 2 6 6 C 1.52993 * 117.50187 * 9.71522 * 5 4 3 7 7 C 1.53001 * 117.49830 * 301.09007 * 5 4 3 8 8 S 1.65606 * 120.00229 * 95.06324 * 4 3 2 9 9 O 1.42098 * 106.39926 * 200.17873 * 8 4 3 10 10 O 1.42101 * 106.39996 * 333.09856 * 8 4 3 11 11 N 1.65599 * 107.21774 * 86.63790 * 8 4 3 12 12 C 1.46501 * 119.99848 * 275.11816 * 11 8 4 13 13 C 1.50701 * 109.47076 * 94.72228 * 12 11 8 14 14 H 1.07995 * 120.00188 * 4.90866 * 13 12 11 15 15 C 1.37876 * 119.99448 * 184.90920 * 13 12 11 16 16 N 1.31509 * 120.00573 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 119.99503 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47164 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47032 * 119.99950 * 17 15 13 20 20 H 1.48495 * 109.46799 * 239.99749 * 17 15 13 21 21 C 1.46496 * 119.99907 * 95.11242 * 11 8 4 22 22 C 1.53002 * 109.46796 * 95.00218 * 21 11 8 23 23 O 1.42899 * 109.47354 * 65.00264 * 22 21 11 24 24 C 1.42893 * 114.00318 * 180.02562 * 23 22 21 25 25 H 1.09004 * 109.46810 * 300.00129 * 1 2 3 26 26 H 1.09000 * 109.47295 * 59.99567 * 1 2 3 27 27 H 1.08997 * 109.47442 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46810 * 239.99871 * 2 1 3 29 29 H 1.09000 * 109.47295 * 120.00433 * 2 1 3 30 30 H 1.09005 * 109.47299 * 295.95490 * 3 2 1 31 31 H 1.09001 * 109.47098 * 55.95220 * 3 2 1 32 32 H 1.09004 * 115.54830 * 155.42680 * 5 4 3 33 33 H 1.09004 * 117.49796 * 0.02562 * 6 5 4 34 34 H 1.09004 * 117.50382 * 145.01684 * 6 5 4 35 35 H 1.08996 * 117.49893 * 214.97473 * 7 5 4 36 36 H 1.08994 * 117.49668 * 359.97438 * 7 5 4 37 37 H 1.09004 * 109.46758 * 214.71809 * 12 11 8 38 38 H 1.08999 * 109.47429 * 334.71953 * 12 11 8 39 39 H 0.96997 * 120.00388 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.47214 * 214.99919 * 21 11 8 41 41 H 1.08996 * 109.47585 * 335.00417 * 21 11 8 42 42 H 1.09005 * 109.47108 * 184.99919 * 22 21 11 43 43 H 1.08997 * 109.47411 * 304.99866 * 22 21 11 44 44 H 1.09000 * 109.47308 * 179.97438 * 24 23 22 45 45 H 1.08999 * 109.47225 * 299.99741 * 24 23 22 46 46 H 1.08999 * 109.47646 * 59.99263 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5018 1.4435 0.0975 5 6 4.1485 1.3618 1.4095 6 6 3.2613 1.0496 2.6162 7 6 3.8256 2.4590 2.4258 8 16 4.4232 1.5371 -1.2754 9 8 5.7120 1.0498 -0.9277 10 8 3.6394 0.9828 -2.3232 11 7 4.6109 3.1434 -1.6313 12 6 3.5841 3.8474 -2.4036 13 6 2.6274 4.5313 -1.4611 14 1 2.8140 4.5165 -0.3975 15 6 1.5140 5.1758 -1.9569 16 7 1.2870 5.1942 -3.2522 17 14 0.3277 6.0229 -0.7886 18 1 0.8060 5.8588 0.6076 19 1 0.2548 7.4687 -1.1196 20 1 -1.0203 5.4153 -0.9254 21 6 5.8036 3.8605 -1.1738 22 6 6.8534 3.8664 -2.2869 23 8 6.3639 4.6180 -3.3993 24 6 7.2727 4.6858 -4.5000 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.7372 1.9350 -0.9240 31 1 1.6188 1.9768 0.8515 32 1 5.1606 0.9570 1.4103 33 1 2.1965 0.9046 2.4339 34 1 3.6895 0.4391 3.4112 35 1 4.6251 2.7756 3.0956 36 1 3.1325 3.2418 2.1180 37 1 4.0577 4.5916 -3.0439 38 1 3.0386 3.1324 -3.0195 39 1 0.5039 5.6479 -3.6009 40 1 5.5361 4.8866 -0.9212 41 1 6.2107 3.3639 -0.2931 42 1 7.7724 4.3213 -1.9172 43 1 7.0557 2.8425 -2.6010 44 1 6.8273 5.2726 -5.3033 45 1 8.2006 5.1574 -4.1765 46 1 7.4833 3.6788 -4.8599 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336880786.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:20 Heat of formation + Delta-G solvation = -118.593826 kcal Electronic energy + Delta-G solvation = -27823.752082 eV Core-core repulsion = 24068.563215 eV Total energy + Delta-G solvation = -3755.188867 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.35972 -39.07919 -38.36738 -36.94804 -36.86618 -35.45997 -34.51708 -32.68658 -31.03020 -28.46253 -27.04672 -26.98214 -24.58608 -23.48608 -23.17777 -22.75777 -22.01770 -19.78567 -18.96571 -18.62549 -18.31340 -17.48429 -17.20317 -17.01314 -16.46884 -16.11549 -15.85731 -15.66867 -15.39591 -15.07169 -14.58209 -14.45783 -14.25412 -13.84384 -13.55299 -13.43340 -13.29222 -13.21045 -13.19544 -12.94284 -12.81672 -12.71254 -12.57963 -12.54662 -12.52166 -12.22599 -12.16583 -11.99874 -11.85277 -11.74649 -11.60492 -11.57278 -11.16488 -10.58819 -10.48538 -9.78288 -9.54357 -8.09599 -6.22084 -0.31274 1.42708 1.44514 1.55252 1.94375 2.45020 2.52943 2.96834 2.99267 3.22454 3.35784 3.82909 3.97929 4.01142 4.09215 4.13565 4.17838 4.22229 4.30623 4.39780 4.46075 4.47067 4.54066 4.57948 4.72771 4.80398 4.83559 4.86835 4.90304 4.99782 5.06616 5.09878 5.18341 5.24881 5.35532 5.38417 5.46327 5.50672 5.59289 5.76643 5.83875 6.04185 6.20386 6.38046 6.90691 7.46563 8.98735 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009234 B = 0.007611 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.469043 B = 3677.905194 C = 5314.445822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.126 3.874 4 N -0.969 5.969 5 C 0.054 3.946 6 C -0.161 4.161 7 C -0.190 4.190 8 S 2.793 3.207 9 O -1.002 7.002 10 O -1.015 7.015 11 N -0.989 5.989 12 C 0.267 3.733 13 C -0.528 4.528 14 H 0.071 0.929 15 C 0.011 3.989 16 N -0.929 5.929 17 Si 0.953 3.047 18 H -0.256 1.256 19 H -0.286 1.286 20 H -0.282 1.282 21 C 0.128 3.872 22 C 0.041 3.959 23 O -0.408 6.408 24 C 0.024 3.976 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.142 0.858 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.029 0.971 38 H 0.007 0.993 39 H 0.262 0.738 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.038 0.962 44 H 0.085 0.915 45 H 0.062 0.938 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.927 -5.774 11.280 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.001 3.999 4 N -0.806 5.806 5 C -0.052 4.052 6 C -0.200 4.200 7 C -0.229 4.229 8 S 2.804 3.196 9 O -0.986 6.986 10 O -1.000 7.000 11 N -0.829 5.829 12 C 0.143 3.857 13 C -0.567 4.567 14 H 0.089 0.911 15 C -0.188 4.188 16 N -0.569 5.569 17 Si 0.778 3.222 18 H -0.180 1.180 19 H -0.212 1.212 20 H -0.208 1.208 21 C 0.002 3.998 22 C -0.037 4.037 23 O -0.328 6.328 24 C -0.072 4.072 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.159 0.841 33 H 0.120 0.880 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.101 0.899 37 H 0.047 0.953 38 H 0.025 0.975 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.107 0.893 43 H 0.056 0.944 44 H 0.104 0.896 45 H 0.080 0.920 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.998 -6.353 10.606 14.207 hybrid contribution -0.727 0.884 -0.216 1.164 sum 6.272 -5.469 10.391 13.312 Atomic orbital electron populations 1.21688 0.94058 1.02652 1.02056 1.22008 0.97258 0.96311 1.02443 1.21309 0.78175 0.97477 1.02948 1.57323 1.15649 1.87671 1.19930 1.21735 0.98281 1.06000 0.79222 1.23417 1.00036 0.98612 0.97909 1.23419 1.04537 0.92644 1.02339 1.01376 0.72182 0.73283 0.72791 1.93477 1.40312 1.80039 1.84820 1.93524 1.72288 1.77961 1.56179 1.57588 1.29016 1.28865 1.67449 1.18707 0.84604 0.91774 0.90566 1.21812 1.07151 1.33511 0.94225 0.91111 1.25763 0.99567 0.97131 0.96297 1.70099 1.28789 1.44410 1.13616 0.85585 0.78780 0.77953 0.79854 1.17968 1.21192 1.20788 1.21359 0.83626 0.99455 0.95397 1.23186 0.97691 0.94968 0.87839 1.88047 1.44285 1.73755 1.26688 1.22891 0.93949 1.00997 0.89354 0.91180 0.94079 0.90879 0.93646 0.89491 0.92267 0.89395 0.84081 0.88036 0.85611 0.86189 0.89886 0.95311 0.97534 0.92878 0.89702 0.87350 0.89330 0.94367 0.89649 0.91958 0.94185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.91 71.98 0.71 -3.01 16 2 C -0.14 -4.14 5.97 30.59 0.18 -3.96 16 3 C 0.13 4.35 4.60 86.38 0.40 4.74 16 4 N -0.97 -33.08 3.18 -493.40 -1.57 -34.65 16 5 C 0.05 1.41 6.40 44.99 0.29 1.70 16 6 C -0.16 -3.15 9.22 30.59 0.28 -2.87 16 7 C -0.19 -4.26 10.09 30.59 0.31 -3.95 16 8 S 2.79 115.56 6.01 -56.49 -0.34 115.22 16 9 O -1.00 -40.02 15.65 -128.00 -2.00 -42.02 16 10 O -1.02 -50.35 15.86 -128.00 -2.03 -52.38 16 11 N -0.99 -42.27 2.81 -519.85 -1.46 -43.74 16 12 C 0.27 13.99 5.28 85.63 0.45 14.44 16 13 C -0.53 -27.64 8.93 25.60 0.23 -27.41 16 14 H 0.07 3.50 7.81 -2.91 -0.02 3.48 16 15 C 0.01 0.62 5.46 84.66 0.46 1.08 16 16 N -0.93 -54.88 13.29 21.45 0.28 -54.60 16 17 Si 0.95 42.18 29.54 68.60 2.03 44.21 16 18 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 C 0.13 4.44 5.81 86.38 0.50 4.94 16 22 C 0.04 1.34 6.28 71.98 0.45 1.79 16 23 O -0.41 -15.40 9.02 -148.98 -1.34 -16.74 16 24 C 0.02 0.68 11.01 113.37 1.25 1.93 16 25 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.04 1.54 8.10 -2.38 -0.02 1.52 16 29 H 0.09 2.10 6.94 -2.39 -0.02 2.09 16 30 H 0.06 2.55 7.24 -2.38 -0.02 2.53 16 31 H 0.09 2.69 6.54 -2.39 -0.02 2.67 16 32 H 0.14 3.50 7.33 -2.38 -0.02 3.48 16 33 H 0.10 2.02 5.77 -2.38 -0.01 2.01 16 34 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.08 2.23 7.99 -2.39 -0.02 2.21 16 37 H 0.03 1.64 6.61 -2.39 -0.02 1.62 16 38 H 0.01 0.40 6.99 -2.39 -0.02 0.38 16 39 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 40 H 0.08 3.00 8.11 -2.39 -0.02 2.98 16 41 H 0.11 3.11 7.47 -2.39 -0.02 3.09 16 42 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 43 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -70.60 382.27 0.03 -70.57 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.94 Total: 24.68 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 5.52 Total: -10.56 kcal Atomic # 7 Polarization: -130.23 SS G_CDS: -2.75 Total: -132.98 kcal Atomic # 8 Polarization: -105.78 SS G_CDS: -5.38 Total: -111.15 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 115.56 SS G_CDS: -0.34 Total: 115.22 kcal Total: -70.60 0.03 -70.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336880786.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.020 kcal (2) G-P(sol) polarization free energy of solvation -70.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds