Wall clock time and date at job start Tue Mar 31 2020 05:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46896 * 2 1 4 4 H 1.09003 * 109.51421 * 304.90007 * 3 2 1 5 5 C 1.53289 * 109.51191 * 184.74725 * 3 2 1 6 6 N 1.47152 * 108.38495 * 187.77617 * 5 3 2 7 7 S 1.65601 * 120.98421 * 230.55740 * 6 5 3 8 8 O 1.42099 * 106.40097 * 28.98586 * 7 6 5 9 9 O 1.42092 * 106.40708 * 161.90908 * 7 6 5 10 10 N 1.65600 * 107.21797 * 275.45208 * 7 6 5 11 11 C 1.46501 * 120.00534 * 95.18349 * 10 7 6 12 12 C 1.53001 * 109.46622 * 94.99941 * 11 10 7 13 13 C 1.46500 * 119.99837 * 275.18666 * 10 7 6 14 14 C 1.50703 * 109.47015 * 95.27331 * 13 10 7 15 15 H 1.07994 * 120.00161 * 5.10590 * 14 13 10 16 16 C 1.37878 * 119.99919 * 185.10177 * 14 13 10 17 17 N 1.31521 * 120.00125 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 120.00243 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.46988 * 89.99796 * 18 16 14 20 20 H 1.48495 * 109.47266 * 209.99883 * 18 16 14 21 21 H 1.48503 * 109.46984 * 330.00271 * 18 16 14 22 22 C 1.47261 * 118.05958 * 50.53225 * 6 5 3 23 23 C 1.53294 * 108.32869 * 309.49211 * 22 6 5 24 24 H 1.08996 * 109.51797 * 172.23698 * 23 22 6 25 25 C 1.53002 * 109.51346 * 292.33745 * 23 22 6 26 26 O 1.42961 * 109.26178 * 52.28274 * 23 22 6 27 27 H 1.09002 * 109.46886 * 60.00012 * 1 2 3 28 28 H 1.09004 * 109.46776 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47212 * 299.99911 * 1 2 3 30 30 H 1.09001 * 109.47403 * 240.00581 * 2 1 3 31 31 H 1.08994 * 109.47638 * 119.99649 * 2 1 3 32 32 H 1.09006 * 109.68159 * 307.49487 * 5 3 2 33 33 H 1.08997 * 109.68889 * 68.01321 * 5 3 2 34 34 H 1.08998 * 109.47527 * 215.00224 * 11 10 7 35 35 H 1.08998 * 109.46545 * 335.00268 * 11 10 7 36 36 H 1.09003 * 109.46788 * 179.97438 * 12 11 10 37 37 H 1.08998 * 109.47401 * 300.00361 * 12 11 10 38 38 H 1.08998 * 109.47393 * 60.00846 * 12 11 10 39 39 H 1.08997 * 109.47767 * 215.27573 * 13 10 7 40 40 H 1.09005 * 109.47526 * 335.27925 * 13 10 7 41 41 H 0.96998 * 119.99917 * 179.97438 * 17 16 14 42 42 H 1.09005 * 109.74568 * 189.76960 * 22 6 5 43 43 H 1.09000 * 109.67738 * 69.17986 * 22 6 5 44 44 H 1.09001 * 109.47193 * 173.68135 * 25 23 22 45 45 H 1.09008 * 109.47118 * 53.68201 * 25 23 22 46 46 H 1.09004 * 109.47267 * 293.68816 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6071 1.9818 -0.8426 5 6 3.5682 1.4454 -0.1196 6 7 4.0461 2.8241 0.0708 7 16 5.0884 3.5219 -1.0104 8 8 4.8267 2.9157 -2.2686 9 8 5.0133 4.9241 -0.7926 10 7 6.6204 3.0633 -0.5802 11 6 7.2465 1.9057 -1.2237 12 6 8.1102 2.3785 -2.3948 13 6 7.3497 3.8153 0.4440 14 6 7.1676 3.1473 1.7826 15 1 6.6383 2.2084 1.8500 16 6 7.6768 3.7349 2.9212 17 7 7.5183 3.1517 4.0894 18 14 8.5918 5.3593 2.8048 19 1 7.6304 6.4809 2.9556 20 1 9.6104 5.4321 3.8829 21 1 9.2620 5.4563 1.4831 22 6 3.5699 3.5656 1.2506 23 6 2.0416 3.4585 1.3028 24 1 1.6787 3.8814 2.2395 25 6 1.4350 4.2264 0.1266 26 8 1.6622 2.0826 1.2213 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8899 32 1 3.9975 0.7991 0.6461 33 1 3.8599 1.0882 -1.1072 34 1 7.8708 1.3813 -0.5003 35 1 6.4726 1.2320 -1.5917 36 1 8.5764 1.5172 -2.8733 37 1 7.4859 2.9029 -3.1182 38 1 8.8840 3.0521 -2.0268 39 1 8.4097 3.8395 0.1913 40 1 6.9639 4.8337 0.4908 41 1 7.8769 3.5650 4.8903 42 1 3.8620 4.6127 1.1700 43 1 3.9993 3.1327 2.1541 44 1 0.3585 4.0578 0.0990 45 1 1.8815 3.8769 -0.8045 46 1 1.6331 5.2915 0.2470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337060424.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:39 Heat of formation + Delta-G solvation = -124.800913 kcal Electronic energy + Delta-G solvation = -27998.128558 eV Core-core repulsion = 24242.670532 eV Total energy + Delta-G solvation = -3755.458026 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.60072 -36.87949 -36.19288 -35.36679 -34.63821 -34.18040 -32.67355 -31.03299 -30.27389 -28.31881 -27.17998 -25.65915 -23.77096 -22.93550 -21.89740 -21.49865 -19.75488 -18.39018 -17.44003 -16.99737 -16.83347 -16.59298 -15.83447 -15.40348 -14.90484 -14.45906 -14.31527 -14.20193 -13.85114 -13.71933 -13.47567 -13.40761 -12.77855 -12.58204 -12.25422 -12.14853 -12.10875 -12.05707 -11.95204 -11.81614 -11.77165 -11.54145 -11.27531 -11.17190 -11.08825 -11.03346 -11.01903 -10.89545 -10.55479 -10.46546 -10.21770 -10.03708 -9.88631 -9.61876 -8.68002 -8.46095 -8.12067 -6.18750 -4.19270 1.12416 3.22892 3.28927 3.33557 3.34856 3.84346 3.96056 4.32221 4.63407 4.91232 4.91523 5.02942 5.12109 5.13672 5.20023 5.27662 5.31868 5.35293 5.42686 5.52342 5.64071 5.68494 5.70603 5.78635 5.87065 5.90479 5.93235 5.96482 6.01953 6.11674 6.19730 6.20317 6.29098 6.43653 6.43904 6.49716 6.54003 6.76575 6.85095 7.08548 7.36924 7.38858 7.52031 8.38668 8.85968 9.42050 10.93349 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013546 B = 0.005696 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.551065 B = 4914.354888 C = 5704.804027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.079 3.921 4 H 0.064 0.936 5 C 0.095 3.905 6 N -0.999 5.999 7 S 2.785 3.215 8 O -0.995 6.995 9 O -0.981 6.981 10 N -0.987 5.987 11 C 0.128 3.872 12 C -0.170 4.170 13 C 0.216 3.784 14 C -0.539 4.539 15 H 0.081 0.919 16 C 0.078 3.922 17 N -0.891 5.891 18 Si 0.866 3.134 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.265 1.265 22 C 0.096 3.904 23 C 0.079 3.921 24 H 0.112 0.888 25 C -0.184 4.184 26 O -0.368 6.368 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.035 0.965 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.062 0.938 45 H 0.055 0.945 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.589 -3.768 -8.354 13.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.019 3.981 4 H 0.081 0.919 5 C -0.032 4.032 6 N -0.838 5.838 7 S 2.796 3.204 8 O -0.979 6.979 9 O -0.965 6.965 10 N -0.827 5.827 11 C 0.001 3.999 12 C -0.229 4.229 13 C 0.093 3.907 14 C -0.578 4.578 15 H 0.099 0.901 16 C -0.126 4.126 17 N -0.529 5.529 18 Si 0.693 3.307 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.189 1.189 22 C -0.029 4.029 23 C 0.019 3.981 24 H 0.129 0.871 25 C -0.242 4.242 26 O -0.287 6.287 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.118 0.882 43 H 0.108 0.892 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.845 -3.263 -8.744 13.566 hybrid contribution 0.947 0.758 0.336 1.259 sum -8.898 -2.505 -8.407 12.496 Atomic orbital electron populations 1.21687 0.95251 1.01291 1.02205 1.21520 0.96699 0.94192 1.02985 1.22426 0.93364 0.94100 0.88183 0.91858 1.22019 0.95046 0.83325 1.02764 1.58081 1.62184 1.23080 1.40454 1.01738 0.72600 0.73324 0.72776 1.93529 1.85179 1.78911 1.40280 1.93542 1.86536 1.30114 1.86316 1.57589 1.31693 1.41128 1.52290 1.21032 0.97080 0.87482 0.94276 1.22212 1.00500 1.01672 0.98533 1.19546 0.93010 0.91601 0.86584 1.21426 1.37615 1.09372 0.89401 0.90079 1.24845 0.95399 0.97149 0.95202 1.69893 1.45480 1.39218 0.98331 0.86994 0.80475 0.84844 0.78379 1.19700 1.21022 1.18914 1.22107 0.93657 0.97989 0.89191 1.22540 0.94055 0.82110 0.99346 0.87071 1.22413 1.01129 1.01319 0.99323 1.87962 1.79482 1.23437 1.37776 0.93105 0.92897 0.91901 0.90515 0.90733 0.90481 0.89105 0.89885 0.91517 0.92016 0.92803 0.92221 0.94703 0.94272 0.92490 0.88166 0.89219 0.91862 0.92599 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.81 37.16 0.36 -1.08 16 2 C -0.12 -1.25 5.65 -26.73 -0.15 -1.41 16 3 C 0.08 1.05 2.39 -26.58 -0.06 0.99 16 4 H 0.06 0.84 6.40 -51.93 -0.33 0.51 16 5 C 0.09 1.41 5.98 -3.54 -0.02 1.39 16 6 N -1.00 -17.42 2.82 -112.98 -0.32 -17.74 16 7 S 2.79 54.61 6.12 -107.50 -0.66 53.95 16 8 O -0.99 -19.62 15.71 -57.17 -0.90 -20.52 16 9 O -0.98 -21.59 15.31 -57.17 -0.88 -22.47 16 10 N -0.99 -19.73 2.83 -115.66 -0.33 -20.05 16 11 C 0.13 2.16 6.09 -4.04 -0.02 2.13 16 12 C -0.17 -2.55 10.24 37.16 0.38 -2.17 16 13 C 0.22 4.95 4.51 -5.19 -0.02 4.93 16 14 C -0.54 -13.92 9.94 -34.44 -0.34 -14.27 16 15 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 16 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 17 N -0.89 -25.52 13.96 55.43 0.77 -24.75 16 18 Si 0.87 20.48 27.37 -169.99 -4.65 15.83 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.26 -6.02 6.69 56.52 0.38 -5.64 16 22 C 0.10 1.66 6.11 -3.47 -0.02 1.64 16 23 C 0.08 1.12 3.93 -26.58 -0.10 1.02 16 24 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 25 C -0.18 -2.42 8.66 37.16 0.32 -2.10 16 26 O -0.37 -5.39 9.76 -35.23 -0.34 -5.74 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.67 7.82 -51.93 -0.41 0.27 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.26 7.08 -51.93 -0.37 0.89 16 34 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 35 H 0.07 1.02 7.46 -51.93 -0.39 0.63 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.79 7.52 -51.93 -0.39 0.40 16 40 H 0.04 0.94 6.13 -51.93 -0.32 0.62 16 41 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.10 1.80 6.84 -51.93 -0.36 1.44 16 43 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.80 6.32 -51.92 -0.33 0.47 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -30.65 371.30 -9.45 -40.09 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.96 Total: 2.72 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 0.22 Total: -6.92 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.13 Total: -62.54 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -2.12 Total: -48.73 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.65 Total: 15.83 kcal Atomic # 16 Polarization: 54.61 SS G_CDS: -0.66 Total: 53.95 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.65 -9.45 -40.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337060424.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.706 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds