Wall clock time and date at job start Tue Mar 31 2020 05:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46896 * 2 1 4 4 H 1.09003 * 109.51421 * 304.90007 * 3 2 1 5 5 C 1.53289 * 109.51191 * 184.74725 * 3 2 1 6 6 N 1.47152 * 108.38495 * 187.77617 * 5 3 2 7 7 S 1.65601 * 120.98421 * 230.55740 * 6 5 3 8 8 O 1.42099 * 106.40097 * 28.98586 * 7 6 5 9 9 O 1.42092 * 106.40708 * 161.90908 * 7 6 5 10 10 N 1.65600 * 107.21797 * 275.45208 * 7 6 5 11 11 C 1.46501 * 120.00534 * 95.18349 * 10 7 6 12 12 C 1.53001 * 109.46622 * 94.99941 * 11 10 7 13 13 C 1.46500 * 119.99837 * 275.18666 * 10 7 6 14 14 C 1.50703 * 109.47015 * 95.27331 * 13 10 7 15 15 H 1.07994 * 120.00161 * 5.10590 * 14 13 10 16 16 C 1.37878 * 119.99919 * 185.10177 * 14 13 10 17 17 N 1.31521 * 120.00125 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 120.00243 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.46988 * 89.99796 * 18 16 14 20 20 H 1.48495 * 109.47266 * 209.99883 * 18 16 14 21 21 H 1.48503 * 109.46984 * 330.00271 * 18 16 14 22 22 C 1.47261 * 118.05958 * 50.53225 * 6 5 3 23 23 C 1.53294 * 108.32869 * 309.49211 * 22 6 5 24 24 H 1.08996 * 109.51797 * 172.23698 * 23 22 6 25 25 C 1.53002 * 109.51346 * 292.33745 * 23 22 6 26 26 O 1.42961 * 109.26178 * 52.28274 * 23 22 6 27 27 H 1.09002 * 109.46886 * 60.00012 * 1 2 3 28 28 H 1.09004 * 109.46776 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47212 * 299.99911 * 1 2 3 30 30 H 1.09001 * 109.47403 * 240.00581 * 2 1 3 31 31 H 1.08994 * 109.47638 * 119.99649 * 2 1 3 32 32 H 1.09006 * 109.68159 * 307.49487 * 5 3 2 33 33 H 1.08997 * 109.68889 * 68.01321 * 5 3 2 34 34 H 1.08998 * 109.47527 * 215.00224 * 11 10 7 35 35 H 1.08998 * 109.46545 * 335.00268 * 11 10 7 36 36 H 1.09003 * 109.46788 * 179.97438 * 12 11 10 37 37 H 1.08998 * 109.47401 * 300.00361 * 12 11 10 38 38 H 1.08998 * 109.47393 * 60.00846 * 12 11 10 39 39 H 1.08997 * 109.47767 * 215.27573 * 13 10 7 40 40 H 1.09005 * 109.47526 * 335.27925 * 13 10 7 41 41 H 0.96998 * 119.99917 * 179.97438 * 17 16 14 42 42 H 1.09005 * 109.74568 * 189.76960 * 22 6 5 43 43 H 1.09000 * 109.67738 * 69.17986 * 22 6 5 44 44 H 1.09001 * 109.47193 * 173.68135 * 25 23 22 45 45 H 1.09008 * 109.47118 * 53.68201 * 25 23 22 46 46 H 1.09004 * 109.47267 * 293.68816 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6071 1.9818 -0.8426 5 6 3.5682 1.4454 -0.1196 6 7 4.0461 2.8241 0.0708 7 16 5.0884 3.5219 -1.0104 8 8 4.8267 2.9157 -2.2686 9 8 5.0133 4.9241 -0.7926 10 7 6.6204 3.0633 -0.5802 11 6 7.2465 1.9057 -1.2237 12 6 8.1102 2.3785 -2.3948 13 6 7.3497 3.8153 0.4440 14 6 7.1676 3.1473 1.7826 15 1 6.6383 2.2084 1.8500 16 6 7.6768 3.7349 2.9212 17 7 7.5183 3.1517 4.0894 18 14 8.5918 5.3593 2.8048 19 1 7.6304 6.4809 2.9556 20 1 9.6104 5.4321 3.8829 21 1 9.2620 5.4563 1.4831 22 6 3.5699 3.5656 1.2506 23 6 2.0416 3.4585 1.3028 24 1 1.6787 3.8814 2.2395 25 6 1.4350 4.2264 0.1266 26 8 1.6622 2.0826 1.2213 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8899 32 1 3.9975 0.7991 0.6461 33 1 3.8599 1.0882 -1.1072 34 1 7.8708 1.3813 -0.5003 35 1 6.4726 1.2320 -1.5917 36 1 8.5764 1.5172 -2.8733 37 1 7.4859 2.9029 -3.1182 38 1 8.8840 3.0521 -2.0268 39 1 8.4097 3.8395 0.1913 40 1 6.9639 4.8337 0.4908 41 1 7.8769 3.5650 4.8903 42 1 3.8620 4.6127 1.1700 43 1 3.9993 3.1327 2.1541 44 1 0.3585 4.0578 0.0990 45 1 1.8815 3.8769 -0.8045 46 1 1.6331 5.2915 0.2470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337060424.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:38 Heat of formation + Delta-G solvation = -145.412376 kcal Electronic energy + Delta-G solvation = -27999.022338 eV Core-core repulsion = 24242.670532 eV Total energy + Delta-G solvation = -3756.351807 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.77835 -38.48728 -37.79225 -36.99245 -35.89041 -35.24311 -34.66628 -32.09394 -31.84530 -29.43579 -28.95665 -26.90816 -24.90581 -24.59355 -23.24118 -22.78301 -20.93776 -19.85365 -19.11004 -18.74107 -18.51597 -17.81428 -17.29354 -16.62985 -16.41816 -16.02220 -15.67208 -15.54950 -15.29441 -14.83296 -14.61243 -14.60246 -14.46532 -14.18311 -13.78287 -13.59417 -13.53188 -13.33634 -13.26848 -13.18615 -13.03809 -12.85326 -12.80037 -12.66015 -12.64534 -12.24369 -12.16524 -12.13790 -12.02916 -11.80895 -11.74878 -11.63361 -11.22443 -11.10013 -10.76390 -9.91141 -9.65807 -8.28065 -6.31866 -0.42303 1.35476 1.39317 1.46345 1.81162 2.33925 2.42235 2.76088 3.06473 3.22034 3.66138 3.72467 3.89235 3.94264 4.06615 4.08547 4.22482 4.26342 4.35576 4.37253 4.40944 4.47875 4.63072 4.64454 4.73061 4.76261 4.87458 4.88986 4.91526 4.95312 4.97175 4.99747 5.13547 5.15862 5.20008 5.31227 5.33433 5.38112 5.46096 5.48969 5.49713 5.82800 6.25131 6.31876 6.73429 7.32316 8.86840 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013546 B = 0.005696 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.551065 B = 4914.354888 C = 5704.804027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C 0.078 3.922 4 H 0.068 0.932 5 C 0.089 3.911 6 N -0.999 5.999 7 S 2.792 3.208 8 O -0.995 6.995 9 O -1.007 7.007 10 N -0.993 5.993 11 C 0.117 3.883 12 C -0.167 4.167 13 C 0.224 3.776 14 C -0.529 4.529 15 H 0.052 0.948 16 C 0.027 3.973 17 N -0.934 5.934 18 Si 0.918 3.082 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.247 1.247 22 C 0.096 3.904 23 C 0.082 3.918 24 H 0.129 0.871 25 C -0.180 4.180 26 O -0.375 6.375 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.032 0.968 41 H 0.266 0.734 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.042 0.958 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.098 -3.945 -9.837 14.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C 0.019 3.981 4 H 0.086 0.914 5 C -0.037 4.037 6 N -0.839 5.839 7 S 2.803 3.197 8 O -0.979 6.979 9 O -0.991 6.991 10 N -0.833 5.833 11 C -0.008 4.008 12 C -0.226 4.226 13 C 0.099 3.901 14 C -0.568 4.568 15 H 0.070 0.930 16 C -0.172 4.172 17 N -0.574 5.574 18 Si 0.742 3.258 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.171 1.171 22 C -0.030 4.030 23 C 0.023 3.977 24 H 0.147 0.853 25 C -0.238 4.238 26 O -0.294 6.294 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.061 0.939 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.348 -3.457 -10.262 14.978 hybrid contribution 1.063 0.704 0.782 1.496 sum -9.285 -2.753 -9.480 13.553 Atomic orbital electron populations 1.21658 0.94231 1.02283 1.01908 1.21570 0.97541 0.92376 1.03707 1.22581 0.91995 0.95693 0.87876 0.91374 1.22261 0.96447 0.81775 1.03211 1.57963 1.61706 1.24172 1.40060 1.01435 0.72563 0.72810 0.72937 1.93520 1.85170 1.78757 1.40439 1.93501 1.86878 1.32000 1.86745 1.57600 1.32069 1.41878 1.51757 1.21306 0.97852 0.86828 0.94798 1.22195 0.99975 1.02834 0.97569 1.19289 0.93751 0.91172 0.85851 1.21536 1.36229 1.08177 0.90901 0.92989 1.25557 0.96453 1.00323 0.94881 1.70013 1.47214 1.41026 0.99122 0.86148 0.79501 0.80888 0.79224 1.19552 1.20610 1.17076 1.22083 0.96005 0.96974 0.87924 1.22579 0.91676 0.82529 1.00942 0.85315 1.22385 1.02205 1.01294 0.97879 1.87966 1.79265 1.23557 1.38620 0.92488 0.91301 0.93084 0.88596 0.91239 0.91113 0.87884 0.90276 0.89885 0.88901 0.93349 0.92628 0.93800 0.95051 0.92449 0.89311 0.91949 0.89753 0.93859 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.81 71.98 0.71 -1.79 16 2 C -0.11 -2.25 5.65 30.60 0.17 -2.08 16 3 C 0.08 1.98 2.39 30.69 0.07 2.05 16 4 H 0.07 1.69 6.40 -2.39 -0.02 1.67 16 5 C 0.09 2.59 5.98 86.35 0.52 3.11 16 6 N -1.00 -34.94 2.82 -511.36 -1.44 -36.39 16 7 S 2.79 108.55 6.12 -56.49 -0.35 108.21 16 8 O -0.99 -38.01 15.71 -128.00 -2.01 -40.02 16 9 O -1.01 -44.38 15.31 -128.00 -1.96 -46.34 16 10 N -0.99 -39.30 2.83 -519.84 -1.47 -40.77 16 11 C 0.12 3.83 6.09 86.38 0.53 4.35 16 12 C -0.17 -4.66 10.24 71.98 0.74 -3.92 16 13 C 0.22 10.21 4.51 85.63 0.39 10.60 16 14 C -0.53 -27.78 9.94 25.60 0.25 -27.52 16 15 H 0.05 2.98 8.06 -2.91 -0.02 2.96 16 16 C 0.03 1.49 5.47 84.65 0.46 1.96 16 17 N -0.93 -54.65 13.96 21.45 0.30 -54.36 16 18 Si 0.92 41.91 27.37 68.60 1.88 43.79 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.25 -10.51 6.69 99.48 0.67 -9.84 16 22 C 0.10 3.39 6.11 86.33 0.53 3.91 16 23 C 0.08 2.29 3.93 30.69 0.12 2.41 16 24 H 0.13 3.11 8.14 -2.39 -0.02 3.10 16 25 C -0.18 -4.50 8.66 71.98 0.62 -3.87 16 26 O -0.38 -10.67 9.76 -148.98 -1.45 -12.13 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.05 1.01 7.82 -2.39 -0.02 0.99 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.10 2.73 7.08 -2.39 -0.02 2.71 16 34 H 0.08 2.63 8.11 -2.39 -0.02 2.61 16 35 H 0.08 2.41 7.46 -2.39 -0.02 2.39 16 36 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 39 H 0.04 1.93 7.52 -2.39 -0.02 1.91 16 40 H 0.03 1.49 6.13 -2.38 -0.01 1.48 16 41 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 42 H 0.09 3.29 6.84 -2.38 -0.02 3.28 16 43 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.04 1.18 6.32 -2.38 -0.02 1.17 16 46 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -65.45 371.30 -0.50 -65.94 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.90 Total: 22.84 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 5.11 Total: -10.79 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -2.61 Total: -131.51 kcal Atomic # 8 Polarization: -93.06 SS G_CDS: -5.43 Total: -98.48 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.88 Total: 43.79 kcal Atomic # 16 Polarization: 108.55 SS G_CDS: -0.35 Total: 108.21 kcal Total: -65.45 -0.50 -65.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337060424.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.468 kcal (2) G-P(sol) polarization free energy of solvation -65.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds