Wall clock time and date at job start Tue Mar 31 2020 05:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47532 * 2 1 4 4 C 1.38230 * 120.42000 * 264.98018 * 3 2 1 5 5 N 1.31856 * 120.76177 * 180.02562 * 4 3 2 6 6 C 1.31878 * 121.72589 * 359.97252 * 5 4 3 7 7 C 1.38184 * 120.76899 * 359.74439 * 6 5 4 8 8 C 1.38623 * 120.41718 * 84.99820 * 3 2 1 9 9 C 1.50696 * 120.79425 * 359.95669 * 8 3 2 10 10 H 1.09007 * 109.47167 * 325.00528 * 9 8 3 11 11 C 1.53001 * 109.46996 * 84.99857 * 9 8 3 12 12 N 1.46499 * 109.47447 * 205.00169 * 9 8 3 13 13 C 1.34784 * 119.99971 * 154.99886 * 12 9 8 14 14 O 1.21583 * 119.99855 * 359.72712 * 13 12 9 15 15 N 1.34771 * 119.99547 * 179.97438 * 13 12 9 16 16 C 1.46506 * 119.99515 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.46931 * 180.02562 * 16 15 13 18 18 O 1.21290 * 120.00342 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00033 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99940 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00464 * 0.02562 * 20 19 17 22 22 C 1.38959 * 120.00019 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99542 * 359.97438 * 22 20 19 24 24 Si 1.86790 * 120.00049 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47358 * 60.00015 * 24 22 20 26 26 H 1.48506 * 109.47142 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47328 * 299.99832 * 24 22 20 28 28 H 1.08997 * 109.46946 * 60.00018 * 1 2 3 29 29 H 1.08997 * 109.47675 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47276 * 299.99990 * 1 2 3 31 31 H 1.09002 * 109.47276 * 240.00010 * 2 1 3 32 32 H 1.09005 * 109.47234 * 119.99954 * 2 1 3 33 33 H 1.08002 * 119.61482 * 0.02562 * 4 3 2 34 34 H 1.08005 * 119.61806 * 179.97438 * 6 5 4 35 35 H 1.07999 * 120.42071 * 180.26751 * 7 6 5 36 36 H 1.09000 * 109.47576 * 299.99781 * 11 9 8 37 37 H 1.08995 * 109.46954 * 60.00572 * 11 9 8 38 38 H 1.09005 * 109.47307 * 180.02562 * 11 9 8 39 39 H 0.96999 * 119.99984 * 334.99734 * 12 9 8 40 40 H 0.96999 * 120.00409 * 0.02562 * 15 13 12 41 41 H 1.08996 * 109.47564 * 300.00635 * 16 15 13 42 42 H 1.09000 * 109.46872 * 60.00432 * 16 15 13 43 43 H 0.96996 * 119.99850 * 359.97438 * 19 17 16 44 44 H 0.97002 * 119.99687 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3641 2.0459 -1.1874 5 7 2.8048 3.2886 -1.1952 6 6 2.9460 3.9813 -0.0819 7 6 2.6288 3.4244 1.1423 8 6 2.1681 2.1172 1.1909 9 6 1.8167 1.4717 2.5065 10 1 0.9655 0.8049 2.3681 11 6 3.0152 0.6695 3.0172 12 7 1.4713 2.5084 3.4823 13 6 0.6664 2.2135 4.5224 14 8 0.2230 1.0885 4.6480 15 7 0.3492 3.1672 5.4204 16 6 -0.5262 2.8468 6.5506 17 6 -0.7229 4.0773 7.3981 18 8 -0.1845 5.1192 7.0888 19 7 -1.4963 4.0197 8.5004 20 6 -1.6749 5.1390 9.2717 21 1 -1.1962 6.0670 8.9958 22 6 -2.4727 5.0799 10.4079 23 7 -3.0563 3.9512 10.7427 24 14 -2.7165 6.6051 11.4583 25 1 -3.3381 7.6763 10.6389 26 1 -3.6033 6.2802 12.6044 27 1 -1.4015 7.0711 11.9672 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2610 1.5101 -2.1195 34 1 3.3104 4.9970 -0.1279 35 1 2.7425 3.9982 2.0501 36 1 3.2722 -0.1019 2.2912 37 1 3.8663 1.3362 3.1555 38 1 2.7609 0.2022 3.9686 39 1 1.8220 3.4070 3.3799 40 1 0.6998 4.0657 5.3179 41 1 -1.4915 2.5050 6.1772 42 1 -0.0701 2.0602 7.1518 43 1 -1.9266 3.1864 8.7480 44 1 -3.6130 3.9097 11.5361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345593993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:25 Heat of formation + Delta-G solvation = -40.980604 kcal Electronic energy + Delta-G solvation = -26136.097228 eV Core-core repulsion = 22281.122722 eV Total energy + Delta-G solvation = -3854.974505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.04650 -39.79823 -38.27245 -36.43115 -34.80595 -34.42658 -33.68361 -32.06695 -31.38492 -30.43975 -29.74775 -27.42110 -25.16734 -24.45340 -24.38415 -22.23910 -21.32838 -20.53116 -19.60907 -18.68035 -18.07008 -17.36226 -16.68910 -15.85048 -15.64039 -15.51708 -15.50867 -14.76023 -14.69299 -14.54392 -14.21938 -14.13753 -13.98871 -13.95484 -13.63319 -13.36605 -13.03743 -12.89680 -12.50362 -12.23572 -12.20178 -11.96577 -11.68911 -11.64147 -11.48487 -11.16853 -11.11538 -10.51997 -10.33198 -10.11065 -9.88583 -9.74316 -9.64040 -9.33221 -9.19631 -8.68779 -8.64632 -8.11557 -6.52703 -3.94805 0.78469 0.88191 2.69035 3.12562 3.20621 3.24441 3.31616 3.45935 3.73398 4.06336 4.08313 4.15305 4.33515 4.38349 4.48559 4.62319 4.87390 4.93276 4.94707 4.98209 5.05780 5.12277 5.15932 5.30108 5.35836 5.48439 5.52122 5.60506 5.63633 5.76479 5.88361 5.93649 5.94448 5.97741 6.04214 6.06068 6.36647 6.43460 6.70015 6.99537 7.44519 7.65785 7.90660 8.15156 8.43606 8.71647 9.03157 9.37888 9.85752 10.64097 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024821 B = 0.002215 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.821833 B =12636.184781 C =13218.581574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 C -0.123 4.123 4 C 0.103 3.897 5 N -0.485 5.485 6 C 0.098 3.902 7 C -0.165 4.165 8 C -0.042 4.042 9 C 0.199 3.801 10 H 0.107 0.893 11 C -0.160 4.160 12 N -0.746 5.746 13 C 0.707 3.293 14 O -0.595 6.595 15 N -0.723 5.723 16 C 0.129 3.871 17 C 0.428 3.572 18 O -0.598 6.598 19 N -0.548 5.548 20 C -0.306 4.306 21 H 0.105 0.895 22 C 0.026 3.974 23 N -0.894 5.894 24 Si 0.934 3.066 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.134 0.866 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.395 0.605 40 H 0.407 0.593 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.396 0.604 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.394 -7.431 -20.267 23.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.125 4.125 3 C -0.125 4.125 4 C -0.054 4.054 5 N -0.193 5.193 6 C -0.058 4.058 7 C -0.186 4.186 8 C -0.051 4.051 9 C 0.094 3.906 10 H 0.125 0.875 11 C -0.219 4.219 12 N -0.404 5.404 13 C 0.407 3.593 14 O -0.474 6.474 15 N -0.380 5.380 16 C 0.000 4.000 17 C 0.214 3.786 18 O -0.485 6.485 19 N -0.183 5.183 20 C -0.435 4.435 21 H 0.123 0.877 22 C -0.177 4.177 23 N -0.535 5.535 24 Si 0.761 3.239 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.198 1.198 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.172 0.828 34 H 0.174 0.826 35 H 0.152 0.848 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.231 0.769 40 H 0.244 0.756 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.230 0.770 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.389 -7.411 -20.926 24.510 hybrid contribution -0.307 0.783 1.513 1.731 sum 10.081 -6.628 -19.413 22.856 Atomic orbital electron populations 1.21776 0.94128 1.02358 1.02495 1.20586 0.96689 0.91604 1.03603 1.20715 1.00579 0.98025 0.93228 1.22667 0.94635 0.90854 0.97232 1.67684 1.12704 1.07677 1.31234 1.22734 0.95822 0.99772 0.87516 1.21922 1.01212 0.95538 0.99882 1.20280 0.95913 0.94099 0.94792 1.19622 0.98956 0.88861 0.83206 0.87540 1.22206 0.97178 1.00032 1.02440 1.45210 1.53900 1.13985 1.27305 1.15800 0.79187 0.84697 0.79642 1.90903 1.58690 1.20620 1.77165 1.44768 1.53052 1.13631 1.26560 1.20794 0.94768 0.97072 0.87344 1.19753 0.85076 0.89505 0.84311 1.90489 1.53366 1.31751 1.72912 1.41780 1.41867 1.13256 1.21418 1.19675 1.28273 0.91043 1.04523 0.87745 1.25329 0.96176 0.98482 0.97720 1.69607 1.31462 1.25609 1.26773 0.85870 0.78449 0.80770 0.78860 1.19773 1.20844 1.19778 0.92486 0.91811 0.92153 0.90432 0.90204 0.82751 0.82572 0.84829 0.91442 0.92197 0.90838 0.76881 0.75607 0.89984 0.89955 0.77006 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.75 37.15 0.36 -0.74 16 2 C -0.09 -0.58 5.41 -27.88 -0.15 -0.74 16 3 C -0.12 -1.03 5.15 -104.48 -0.54 -1.57 16 4 C 0.10 0.89 10.84 -17.54 -0.19 0.70 16 5 N -0.48 -4.92 10.36 -13.25 -0.14 -5.06 16 6 C 0.10 0.86 11.18 -17.55 -0.20 0.67 16 7 C -0.17 -1.41 9.31 -39.44 -0.37 -1.78 16 8 C -0.04 -0.39 5.09 -104.32 -0.53 -0.92 16 9 C 0.20 2.04 2.14 -69.08 -0.15 1.89 16 10 H 0.11 1.23 5.26 -51.93 -0.27 0.96 16 11 C -0.16 -1.49 9.32 37.16 0.35 -1.15 16 12 N -0.75 -8.64 5.01 -59.81 -0.30 -8.94 16 13 C 0.71 10.99 8.53 -86.92 -0.74 10.25 16 14 O -0.60 -11.00 16.00 5.29 0.08 -10.92 16 15 N -0.72 -11.81 5.53 -66.41 -0.37 -12.18 16 16 C 0.13 2.35 6.15 -5.19 -0.03 2.31 16 17 C 0.43 9.69 7.85 -10.99 -0.09 9.61 16 18 O -0.60 -15.10 15.24 5.55 0.08 -15.01 16 19 N -0.55 -13.48 5.29 -10.96 -0.06 -13.54 16 20 C -0.31 -8.25 9.68 -14.93 -0.14 -8.39 16 21 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 22 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 23 N -0.89 -23.75 13.05 55.50 0.72 -23.02 16 24 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.55 6.87 -51.93 -0.36 0.20 16 31 H 0.08 0.39 8.06 -51.93 -0.42 -0.03 16 32 H 0.08 0.53 5.82 -51.93 -0.30 0.23 16 33 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.16 1.01 8.06 -52.48 -0.42 0.58 16 35 H 0.13 0.91 6.18 -52.49 -0.32 0.59 16 36 H 0.07 0.51 6.87 -51.93 -0.36 0.16 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.40 3.76 6.30 -40.82 -0.26 3.50 16 40 H 0.41 6.45 7.45 -40.82 -0.30 6.15 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.40 9.37 7.90 -40.82 -0.32 9.04 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -32.34 368.42 -7.76 -40.10 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -5.81 Total: 16.88 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -2.51 Total: 10.73 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -0.14 Total: -62.73 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: 0.17 Total: -25.93 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.34 -7.76 -40.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345593993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.877 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds