Wall clock time and date at job start Tue Mar 31 2020 05:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47532 * 2 1 4 4 C 1.38230 * 120.42000 * 264.98018 * 3 2 1 5 5 N 1.31856 * 120.76177 * 180.02562 * 4 3 2 6 6 C 1.31878 * 121.72589 * 359.97252 * 5 4 3 7 7 C 1.38184 * 120.76899 * 359.74439 * 6 5 4 8 8 C 1.38623 * 120.41718 * 84.99820 * 3 2 1 9 9 C 1.50696 * 120.79425 * 359.95669 * 8 3 2 10 10 H 1.09007 * 109.47167 * 325.00528 * 9 8 3 11 11 C 1.53001 * 109.46996 * 84.99857 * 9 8 3 12 12 N 1.46499 * 109.47447 * 205.00169 * 9 8 3 13 13 C 1.34784 * 119.99971 * 154.99886 * 12 9 8 14 14 O 1.21583 * 119.99855 * 359.72712 * 13 12 9 15 15 N 1.34771 * 119.99547 * 179.97438 * 13 12 9 16 16 C 1.46506 * 119.99515 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.46931 * 180.02562 * 16 15 13 18 18 O 1.21290 * 120.00342 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00033 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99940 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00464 * 0.02562 * 20 19 17 22 22 C 1.38959 * 120.00019 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99542 * 359.97438 * 22 20 19 24 24 Si 1.86790 * 120.00049 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47358 * 60.00015 * 24 22 20 26 26 H 1.48506 * 109.47142 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47328 * 299.99832 * 24 22 20 28 28 H 1.08997 * 109.46946 * 60.00018 * 1 2 3 29 29 H 1.08997 * 109.47675 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47276 * 299.99990 * 1 2 3 31 31 H 1.09002 * 109.47276 * 240.00010 * 2 1 3 32 32 H 1.09005 * 109.47234 * 119.99954 * 2 1 3 33 33 H 1.08002 * 119.61482 * 0.02562 * 4 3 2 34 34 H 1.08005 * 119.61806 * 179.97438 * 6 5 4 35 35 H 1.07999 * 120.42071 * 180.26751 * 7 6 5 36 36 H 1.09000 * 109.47576 * 299.99781 * 11 9 8 37 37 H 1.08995 * 109.46954 * 60.00572 * 11 9 8 38 38 H 1.09005 * 109.47307 * 180.02562 * 11 9 8 39 39 H 0.96999 * 119.99984 * 334.99734 * 12 9 8 40 40 H 0.96999 * 120.00409 * 0.02562 * 15 13 12 41 41 H 1.08996 * 109.47564 * 300.00635 * 16 15 13 42 42 H 1.09000 * 109.46872 * 60.00432 * 16 15 13 43 43 H 0.96996 * 119.99850 * 359.97438 * 19 17 16 44 44 H 0.97002 * 119.99687 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3641 2.0459 -1.1874 5 7 2.8048 3.2886 -1.1952 6 6 2.9460 3.9813 -0.0819 7 6 2.6288 3.4244 1.1423 8 6 2.1681 2.1172 1.1909 9 6 1.8167 1.4717 2.5065 10 1 0.9655 0.8049 2.3681 11 6 3.0152 0.6695 3.0172 12 7 1.4713 2.5084 3.4823 13 6 0.6664 2.2135 4.5224 14 8 0.2230 1.0885 4.6480 15 7 0.3492 3.1672 5.4204 16 6 -0.5262 2.8468 6.5506 17 6 -0.7229 4.0773 7.3981 18 8 -0.1845 5.1192 7.0888 19 7 -1.4963 4.0197 8.5004 20 6 -1.6749 5.1390 9.2717 21 1 -1.1962 6.0670 8.9958 22 6 -2.4727 5.0799 10.4079 23 7 -3.0563 3.9512 10.7427 24 14 -2.7165 6.6051 11.4583 25 1 -3.3381 7.6763 10.6389 26 1 -3.6033 6.2802 12.6044 27 1 -1.4015 7.0711 11.9672 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2610 1.5101 -2.1195 34 1 3.3104 4.9970 -0.1279 35 1 2.7425 3.9982 2.0501 36 1 3.2722 -0.1019 2.2912 37 1 3.8663 1.3362 3.1555 38 1 2.7609 0.2022 3.9686 39 1 1.8220 3.4070 3.3799 40 1 0.6998 4.0657 5.3179 41 1 -1.4915 2.5050 6.1772 42 1 -0.0701 2.0602 7.1518 43 1 -1.9266 3.1864 8.7480 44 1 -3.6130 3.9097 11.5361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345593993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:24 Heat of formation + Delta-G solvation = -64.247216 kcal Electronic energy + Delta-G solvation = -26137.106144 eV Core-core repulsion = 22281.122722 eV Total energy + Delta-G solvation = -3855.983421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.83966 -40.99197 -40.01635 -37.36214 -36.21520 -35.50336 -35.26620 -33.39090 -32.88712 -31.23730 -30.43726 -28.95816 -26.47796 -25.68304 -25.07685 -23.09490 -22.05921 -21.62022 -21.34381 -20.14063 -19.76152 -18.25132 -17.66303 -17.25498 -16.87890 -16.77559 -16.46562 -16.28053 -15.91814 -15.74775 -15.48141 -15.24054 -15.08695 -14.85284 -14.58756 -14.26350 -14.05576 -13.93684 -13.53801 -13.49893 -13.47663 -13.17623 -12.90710 -12.89408 -12.46654 -12.39979 -12.13721 -12.11593 -11.78601 -11.55783 -11.44186 -10.68028 -10.55464 -10.44510 -10.35880 -10.10321 -9.94808 -9.83163 -8.50574 -6.00731 0.14865 0.19323 1.38363 1.42335 1.50734 1.56987 1.90330 2.08769 2.28649 2.79346 3.01807 3.16735 3.27607 3.35440 3.55947 3.77358 3.89315 3.97689 4.18331 4.22396 4.24517 4.33917 4.43649 4.46450 4.47044 4.50015 4.63826 4.71891 4.79585 4.92599 4.93833 5.04718 5.08938 5.19785 5.29408 5.32877 5.38371 5.39244 5.52061 5.73883 5.88055 5.93146 6.48503 6.96629 7.00924 7.03838 7.42263 7.50015 7.94976 8.66094 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024821 B = 0.002215 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.821833 B =12636.184781 C =13218.581574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.123 4.123 4 C 0.096 3.904 5 N -0.507 5.507 6 C 0.089 3.911 7 C -0.169 4.169 8 C -0.052 4.052 9 C 0.201 3.799 10 H 0.093 0.907 11 C -0.155 4.155 12 N -0.731 5.731 13 C 0.708 3.292 14 O -0.625 6.625 15 N -0.724 5.724 16 C 0.142 3.858 17 C 0.434 3.566 18 O -0.624 6.624 19 N -0.559 5.559 20 C -0.337 4.337 21 H 0.086 0.914 22 C -0.011 4.011 23 N -0.916 5.916 24 Si 0.996 3.004 25 H -0.270 1.270 26 H -0.272 1.272 27 H -0.270 1.270 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.036 0.964 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.176 0.824 34 H 0.176 0.824 35 H 0.148 0.852 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.407 0.593 40 H 0.410 0.590 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.399 0.601 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.985 -7.491 -21.111 24.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C -0.125 4.125 4 C -0.060 4.060 5 N -0.216 5.216 6 C -0.067 4.067 7 C -0.189 4.189 8 C -0.061 4.061 9 C 0.096 3.904 10 H 0.111 0.889 11 C -0.213 4.213 12 N -0.389 5.389 13 C 0.408 3.592 14 O -0.506 6.506 15 N -0.381 5.381 16 C 0.014 3.986 17 C 0.221 3.779 18 O -0.512 6.512 19 N -0.195 5.195 20 C -0.467 4.467 21 H 0.104 0.896 22 C -0.212 4.212 23 N -0.556 5.556 24 Si 0.820 3.180 25 H -0.195 1.195 26 H -0.197 1.197 27 H -0.195 1.195 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.193 0.807 34 H 0.193 0.807 35 H 0.165 0.835 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.245 0.755 40 H 0.247 0.753 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.233 0.767 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.005 -7.472 -21.806 25.543 hybrid contribution -0.454 0.775 1.675 1.901 sum 10.551 -6.698 -20.131 23.695 Atomic orbital electron populations 1.21751 0.94689 1.02675 1.01437 1.20625 0.96064 0.90856 1.04713 1.20877 1.00073 0.98707 0.92864 1.23042 0.94166 0.90643 0.98171 1.67711 1.13440 1.08481 1.31979 1.23085 0.95686 1.00626 0.87291 1.22093 1.00887 0.95409 1.00510 1.20247 0.96802 0.94610 0.94394 1.19656 0.98868 0.88420 0.83454 0.88869 1.22156 0.96851 1.00424 1.01898 1.45126 1.52543 1.15016 1.26199 1.15856 0.79367 0.83956 0.80039 1.90885 1.59964 1.21743 1.77966 1.44682 1.53050 1.13983 1.26385 1.20588 0.95862 0.94769 0.87426 1.20420 0.83404 0.90389 0.83732 1.90466 1.53973 1.33329 1.73438 1.41831 1.42696 1.12911 1.22045 1.19695 1.29659 0.91316 1.05985 0.89557 1.26128 0.95360 1.01370 0.98298 1.69675 1.31621 1.27052 1.27245 0.84935 0.78492 0.77264 0.77348 1.19504 1.19675 1.19465 0.92213 0.90848 0.94455 0.88205 0.90207 0.80675 0.80705 0.83453 0.89583 0.91490 0.92796 0.75528 0.75258 0.89053 0.88894 0.76687 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.75 71.98 0.70 -1.33 16 2 C -0.08 -0.99 5.41 29.85 0.16 -0.83 16 3 C -0.12 -1.87 5.15 -19.77 -0.10 -1.97 16 4 C 0.10 1.51 10.84 84.69 0.92 2.42 16 5 N -0.51 -9.57 10.36 -195.84 -2.03 -11.60 16 6 C 0.09 1.44 11.18 84.67 0.95 2.39 16 7 C -0.17 -2.63 9.31 22.36 0.21 -2.42 16 8 C -0.05 -0.88 5.09 -19.67 -0.10 -0.98 16 9 C 0.20 3.93 2.14 44.24 0.09 4.03 16 10 H 0.09 2.13 5.26 -2.38 -0.01 2.12 16 11 C -0.15 -2.71 9.32 71.98 0.67 -2.04 16 12 N -0.73 -16.23 5.01 -461.41 -2.31 -18.54 16 13 C 0.71 21.55 8.53 179.05 1.53 23.08 16 14 O -0.62 -22.88 16.00 -3.98 -0.06 -22.94 16 15 N -0.72 -23.15 5.53 -482.29 -2.67 -25.82 16 16 C 0.14 5.12 6.15 85.63 0.53 5.64 16 17 C 0.43 19.71 7.85 87.66 0.69 20.40 16 18 O -0.62 -31.67 15.24 -3.06 -0.05 -31.72 16 19 N -0.56 -27.82 5.29 -306.98 -1.62 -29.44 16 20 C -0.34 -18.42 9.68 84.04 0.81 -17.61 16 21 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 22 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 23 N -0.92 -48.42 13.05 21.67 0.28 -48.14 16 24 Si 1.00 41.46 29.55 68.60 2.03 43.49 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.04 0.68 6.87 -2.39 -0.02 0.66 16 31 H 0.10 0.73 8.06 -2.39 -0.02 0.72 16 32 H 0.08 0.94 5.82 -2.38 -0.01 0.93 16 33 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.15 1.75 6.18 -2.91 -0.02 1.74 16 36 H 0.09 1.17 6.87 -2.39 -0.02 1.16 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.41 7.19 6.30 -92.71 -0.58 6.60 16 40 H 0.41 12.73 7.45 -92.71 -0.69 12.04 16 41 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 44 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -68.75 368.42 0.16 -68.59 By element: Atomic # 1 Polarization: 46.38 SS G_CDS: -0.94 Total: 45.44 kcal Atomic # 6 Polarization: 23.16 SS G_CDS: 7.52 Total: 30.68 kcal Atomic # 7 Polarization: -125.19 SS G_CDS: -8.35 Total: -133.54 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -0.11 Total: -54.66 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -68.75 0.16 -68.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345593993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.343 kcal (2) G-P(sol) polarization free energy of solvation -68.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds