Wall clock time and date at job start Tue Mar 31 2020 05:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47387 * 2 1 4 4 C 1.52997 * 109.46958 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.55821 * 54.87465 * 4 3 2 6 6 C 1.53300 * 109.51089 * 175.00054 * 4 3 2 7 7 N 1.47148 * 108.41473 * 172.24371 * 6 4 3 8 8 S 1.65602 * 120.98114 * 129.42466 * 7 6 4 9 9 O 1.42101 * 106.39991 * 203.53711 * 8 7 6 10 10 O 1.42100 * 106.40485 * 336.45743 * 8 7 6 11 11 N 1.65602 * 107.21886 * 90.00171 * 8 7 6 12 12 C 1.46504 * 119.99444 * 270.00106 * 11 8 7 13 13 C 1.46495 * 120.00499 * 89.99512 * 11 8 7 14 14 H 1.09004 * 109.46986 * 0.02562 * 13 11 8 15 15 C 1.52999 * 109.46948 * 120.00180 * 13 11 8 16 16 C 1.50696 * 109.47637 * 240.00282 * 13 11 8 17 17 H 1.08006 * 119.99924 * 0.02562 * 16 13 11 18 18 C 1.37878 * 120.00208 * 179.97438 * 16 13 11 19 19 N 1.31509 * 119.99937 * 0.02562 * 18 16 13 20 20 Si 1.86805 * 119.99855 * 179.97438 * 18 16 13 21 21 H 1.48497 * 109.47064 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46690 * 120.00426 * 20 18 16 23 23 H 1.48500 * 109.46822 * 239.99963 * 20 18 16 24 24 C 1.47156 * 118.03649 * 309.44697 * 7 6 4 25 25 C 1.53286 * 108.38530 * 50.53434 * 24 7 6 26 26 O 1.42961 * 109.22305 * 307.70098 * 25 24 7 27 27 H 1.09000 * 109.46651 * 300.00099 * 1 2 3 28 28 H 1.08998 * 109.46896 * 60.00011 * 1 2 3 29 29 H 1.08999 * 109.47302 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46706 * 239.99828 * 2 1 3 31 31 H 1.08996 * 109.47166 * 120.00457 * 2 1 3 32 32 H 1.09000 * 109.46853 * 60.00019 * 3 2 1 33 33 H 1.08998 * 109.46633 * 300.00135 * 3 2 1 34 34 H 1.09002 * 109.68260 * 52.49979 * 6 4 3 35 35 H 1.08999 * 109.68056 * 291.98411 * 6 4 3 36 36 H 1.08999 * 109.47565 * 90.00126 * 12 11 8 37 37 H 1.09000 * 109.46772 * 209.99501 * 12 11 8 38 38 H 1.08997 * 109.47024 * 329.99412 * 12 11 8 39 39 H 1.08991 * 109.47505 * 60.00489 * 15 13 11 40 40 H 1.09005 * 109.46962 * 180.02562 * 15 13 11 41 41 H 1.09008 * 109.47112 * 299.99715 * 15 13 11 42 42 H 0.97004 * 120.00377 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.67987 * 170.26585 * 24 7 6 44 44 H 1.09005 * 109.67921 * 290.80906 * 24 7 6 45 45 H 1.09003 * 109.51258 * 67.62584 * 25 24 7 46 46 H 1.09002 * 109.51282 * 187.72484 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9345 0.8515 -0.8409 6 6 4.0821 2.8818 -0.1266 7 7 5.5413 2.8743 0.0626 8 16 6.5455 3.6200 -1.0228 9 8 7.8140 2.9931 -0.8920 10 8 5.8329 3.6838 -2.2505 11 7 6.7421 5.1838 -0.5144 12 6 5.8233 6.2260 -0.9792 13 6 7.8346 5.5250 0.3999 14 1 8.4075 4.6272 0.6325 15 6 8.7503 6.5565 -0.2620 16 6 7.2650 6.1010 1.6706 17 1 6.1959 6.2025 1.7857 18 6 8.1084 6.4976 2.6866 19 7 9.4102 6.3736 2.5466 20 14 7.4022 7.2124 4.2614 21 1 5.9205 7.2455 4.1690 22 1 7.8072 6.3676 5.4135 23 1 7.9177 8.5917 4.4536 24 6 6.0821 2.1842 1.2445 25 6 5.4733 0.7787 1.3042 26 8 4.0495 0.8785 1.2234 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.6162 3.5053 0.6365 35 1 3.8422 3.2716 -1.1158 36 1 4.9809 6.3008 -0.2915 37 1 6.3470 7.1812 -1.0174 38 1 5.4587 5.9715 -1.9743 39 1 8.1778 7.4543 -0.4949 40 1 9.5635 6.8101 0.4182 41 1 9.1625 6.1398 -1.1811 42 1 10.0037 6.6530 3.2612 43 1 7.1666 2.1115 1.1629 44 1 5.8175 2.7375 2.1456 45 1 5.8447 0.1852 0.4687 46 1 5.7528 0.3004 2.2430 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407977471.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:35 Heat of formation + Delta-G solvation = -127.989673 kcal Electronic energy + Delta-G solvation = -27296.165227 eV Core-core repulsion = 23540.568925 eV Total energy + Delta-G solvation = -3755.596301 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.36612 -36.83756 -36.17305 -35.34888 -35.24834 -34.45222 -32.62914 -31.40527 -29.10187 -27.95667 -25.90128 -25.48234 -25.16552 -23.25566 -21.43147 -20.88645 -20.69238 -18.43853 -17.39421 -16.89411 -16.70660 -16.43227 -15.74274 -15.17120 -15.02651 -14.87906 -14.65472 -14.32521 -14.04299 -13.55928 -13.28426 -13.18463 -12.93749 -12.82758 -12.25337 -12.14833 -12.02272 -11.86187 -11.80083 -11.55532 -11.41053 -11.24717 -11.20544 -11.19101 -11.05830 -11.04100 -10.85864 -10.77210 -10.47916 -10.33403 -10.28074 -10.08341 -9.99701 -9.30710 -8.59499 -8.51836 -7.97316 -6.12501 -4.20959 1.13107 3.21541 3.29652 3.31440 3.36447 3.75008 4.00681 4.33094 4.50676 4.82793 4.89202 4.91265 4.97102 5.08834 5.17843 5.18708 5.31229 5.40574 5.45437 5.54598 5.58653 5.62860 5.68244 5.71344 5.77059 5.88365 5.98078 6.09272 6.14160 6.18547 6.23266 6.26557 6.34391 6.57779 6.70484 6.80583 6.87542 7.06727 7.21165 7.45654 7.60330 7.74385 8.01006 8.22996 8.82976 9.45869 10.92482 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014889 B = 0.004499 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.082143 B = 6221.661501 C = 7007.257909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.111 4.111 4 C 0.081 3.919 5 H 0.061 0.939 6 C 0.092 3.908 7 N -1.008 6.008 8 S 2.780 3.220 9 O -0.978 6.978 10 O -0.997 6.997 11 N -0.989 5.989 12 C 0.100 3.900 13 C 0.268 3.732 14 H 0.057 0.943 15 C -0.146 4.146 16 C -0.524 4.524 17 H 0.062 0.938 18 C 0.064 3.936 19 N -0.887 5.887 20 Si 0.896 3.104 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.088 3.912 25 C 0.053 3.947 26 O -0.375 6.375 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.033 0.967 40 H 0.094 0.906 41 H 0.012 0.988 42 H 0.263 0.737 43 H 0.103 0.897 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.475 -8.819 -3.875 15.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.149 4.149 4 C 0.021 3.979 5 H 0.079 0.921 6 C -0.034 4.034 7 N -0.847 5.847 8 S 2.791 3.209 9 O -0.962 6.962 10 O -0.981 6.981 11 N -0.832 5.832 12 C -0.047 4.047 13 C 0.165 3.835 14 H 0.075 0.925 15 C -0.206 4.206 16 C -0.563 4.563 17 H 0.081 0.919 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.724 3.276 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.210 1.210 24 C -0.038 4.038 25 C -0.025 4.025 26 O -0.294 6.294 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.112 0.888 41 H 0.031 0.969 42 H 0.073 0.927 43 H 0.121 0.879 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.015 -9.230 -4.414 15.780 hybrid contribution -0.219 0.859 1.156 1.457 sum -12.234 -8.371 -3.257 15.177 Atomic orbital electron populations 1.21778 0.95995 1.01442 1.01730 1.21468 0.95470 0.96495 1.02477 1.21618 0.92235 0.97966 1.03120 1.22460 0.94622 0.93232 0.87548 0.92102 1.22039 0.80425 0.97768 1.03151 1.58330 1.16359 1.69708 1.40281 1.01881 0.72766 0.73251 0.72987 1.93569 1.40252 1.75620 1.86740 1.93508 1.74908 1.87381 1.42271 1.57729 1.40340 1.23074 1.62014 1.21252 0.92877 0.93085 0.97450 1.18730 0.82423 0.96205 0.86167 0.92497 1.22072 1.01403 0.98668 0.98427 1.21412 0.93497 1.42105 0.99298 0.91944 1.24923 0.94797 0.95566 0.98541 1.69886 1.02111 1.47399 1.33165 0.86485 0.79192 0.78798 0.83166 1.19839 1.20947 1.20991 1.22063 0.99918 0.93009 0.88770 1.22924 0.81075 0.96041 1.02490 1.87917 1.20987 1.82677 1.37800 0.92716 0.92864 0.92929 0.92275 0.91178 0.90724 0.90320 0.90729 0.88571 0.93897 0.90593 0.92151 0.94794 0.88802 0.96864 0.92684 0.87928 0.90091 0.92998 0.87797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.12 5.83 -26.73 -0.16 -1.27 16 3 C -0.11 -1.11 4.93 -26.73 -0.13 -1.24 16 4 C 0.08 1.01 2.78 -26.58 -0.07 0.94 16 5 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 6 C 0.09 1.30 6.00 -3.53 -0.02 1.28 16 7 N -1.01 -16.87 3.40 -113.06 -0.38 -17.25 16 8 S 2.78 54.93 6.16 -107.50 -0.66 54.27 16 9 O -0.98 -22.03 15.32 -57.17 -0.88 -22.91 16 10 O -1.00 -20.08 15.36 -57.17 -0.88 -20.96 16 11 N -0.99 -20.54 3.12 -115.86 -0.36 -20.90 16 12 C 0.10 1.78 9.90 59.85 0.59 2.37 16 13 C 0.27 6.47 2.62 -69.09 -0.18 6.29 16 14 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 15 C -0.15 -3.46 8.95 37.16 0.33 -3.13 16 16 C -0.52 -13.31 8.37 -34.44 -0.29 -13.60 16 17 H 0.06 1.57 7.65 -52.48 -0.40 1.17 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -24.07 11.32 55.43 0.63 -23.44 16 20 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.09 1.39 6.71 -3.54 -0.02 1.37 16 25 C 0.05 0.69 6.99 37.31 0.26 0.95 16 26 O -0.38 -5.09 9.94 -35.23 -0.35 -5.44 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.07 0.71 7.84 -51.93 -0.41 0.30 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.10 1.30 6.95 -51.93 -0.36 0.93 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.35 6.43 -51.93 -0.33 1.01 16 38 H 0.06 0.98 7.02 -51.93 -0.36 0.61 16 39 H 0.03 0.75 6.66 -51.93 -0.35 0.40 16 40 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 41 H 0.01 0.28 8.14 -51.92 -0.42 -0.14 16 42 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 43 H 0.10 1.72 6.94 -51.93 -0.36 1.36 16 44 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -30.25 370.39 -9.62 -39.87 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.88 Total: 1.21 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 0.58 Total: -5.28 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.12 Total: -61.59 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -2.10 Total: -49.31 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 54.93 SS G_CDS: -0.66 Total: 54.27 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.25 -9.62 -39.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407977471.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.117 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds