Wall clock time and date at job start Tue Mar 31 2020 05:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47387 * 2 1 4 4 C 1.52997 * 109.46958 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.55821 * 54.87465 * 4 3 2 6 6 C 1.53300 * 109.51089 * 175.00054 * 4 3 2 7 7 N 1.47148 * 108.41473 * 172.24371 * 6 4 3 8 8 S 1.65602 * 120.98114 * 129.42466 * 7 6 4 9 9 O 1.42101 * 106.39991 * 203.53711 * 8 7 6 10 10 O 1.42100 * 106.40485 * 336.45743 * 8 7 6 11 11 N 1.65602 * 107.21886 * 90.00171 * 8 7 6 12 12 C 1.46504 * 119.99444 * 270.00106 * 11 8 7 13 13 C 1.46495 * 120.00499 * 89.99512 * 11 8 7 14 14 H 1.09004 * 109.46986 * 0.02562 * 13 11 8 15 15 C 1.52999 * 109.46948 * 120.00180 * 13 11 8 16 16 C 1.50696 * 109.47637 * 240.00282 * 13 11 8 17 17 H 1.08006 * 119.99924 * 0.02562 * 16 13 11 18 18 C 1.37878 * 120.00208 * 179.97438 * 16 13 11 19 19 N 1.31509 * 119.99937 * 0.02562 * 18 16 13 20 20 Si 1.86805 * 119.99855 * 179.97438 * 18 16 13 21 21 H 1.48497 * 109.47064 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46690 * 120.00426 * 20 18 16 23 23 H 1.48500 * 109.46822 * 239.99963 * 20 18 16 24 24 C 1.47156 * 118.03649 * 309.44697 * 7 6 4 25 25 C 1.53286 * 108.38530 * 50.53434 * 24 7 6 26 26 O 1.42961 * 109.22305 * 307.70098 * 25 24 7 27 27 H 1.09000 * 109.46651 * 300.00099 * 1 2 3 28 28 H 1.08998 * 109.46896 * 60.00011 * 1 2 3 29 29 H 1.08999 * 109.47302 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46706 * 239.99828 * 2 1 3 31 31 H 1.08996 * 109.47166 * 120.00457 * 2 1 3 32 32 H 1.09000 * 109.46853 * 60.00019 * 3 2 1 33 33 H 1.08998 * 109.46633 * 300.00135 * 3 2 1 34 34 H 1.09002 * 109.68260 * 52.49979 * 6 4 3 35 35 H 1.08999 * 109.68056 * 291.98411 * 6 4 3 36 36 H 1.08999 * 109.47565 * 90.00126 * 12 11 8 37 37 H 1.09000 * 109.46772 * 209.99501 * 12 11 8 38 38 H 1.08997 * 109.47024 * 329.99412 * 12 11 8 39 39 H 1.08991 * 109.47505 * 60.00489 * 15 13 11 40 40 H 1.09005 * 109.46962 * 180.02562 * 15 13 11 41 41 H 1.09008 * 109.47112 * 299.99715 * 15 13 11 42 42 H 0.97004 * 120.00377 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.67987 * 170.26585 * 24 7 6 44 44 H 1.09005 * 109.67921 * 290.80906 * 24 7 6 45 45 H 1.09003 * 109.51258 * 67.62584 * 25 24 7 46 46 H 1.09002 * 109.51282 * 187.72484 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9345 0.8515 -0.8409 6 6 4.0821 2.8818 -0.1266 7 7 5.5413 2.8743 0.0626 8 16 6.5455 3.6200 -1.0228 9 8 7.8140 2.9931 -0.8920 10 8 5.8329 3.6838 -2.2505 11 7 6.7421 5.1838 -0.5144 12 6 5.8233 6.2260 -0.9792 13 6 7.8346 5.5250 0.3999 14 1 8.4075 4.6272 0.6325 15 6 8.7503 6.5565 -0.2620 16 6 7.2650 6.1010 1.6706 17 1 6.1959 6.2025 1.7857 18 6 8.1084 6.4976 2.6866 19 7 9.4102 6.3736 2.5466 20 14 7.4022 7.2124 4.2614 21 1 5.9205 7.2455 4.1690 22 1 7.8072 6.3676 5.4135 23 1 7.9177 8.5917 4.4536 24 6 6.0821 2.1842 1.2445 25 6 5.4733 0.7787 1.3042 26 8 4.0495 0.8785 1.2234 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.6162 3.5053 0.6365 35 1 3.8422 3.2716 -1.1158 36 1 4.9809 6.3008 -0.2915 37 1 6.3470 7.1812 -1.0174 38 1 5.4587 5.9715 -1.9743 39 1 8.1778 7.4543 -0.4949 40 1 9.5635 6.8101 0.4182 41 1 9.1625 6.1398 -1.1811 42 1 10.0037 6.6530 3.2612 43 1 7.1666 2.1115 1.1629 44 1 5.8175 2.7375 2.1456 45 1 5.8447 0.1852 0.4687 46 1 5.7528 0.3004 2.2430 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407977471.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:34 Heat of formation + Delta-G solvation = -147.863939 kcal Electronic energy + Delta-G solvation = -27297.027039 eV Core-core repulsion = 23540.568925 eV Total energy + Delta-G solvation = -3756.458114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.44586 -38.48253 -37.91978 -36.98717 -36.20065 -35.55455 -34.52826 -32.36673 -30.93943 -28.98348 -27.36571 -27.04992 -26.71733 -24.29995 -22.62763 -22.26394 -21.83317 -19.90776 -18.90002 -18.51887 -18.34960 -17.72904 -17.22971 -16.68389 -16.23019 -15.98942 -15.83738 -15.43609 -15.32457 -15.21594 -14.73959 -14.64289 -14.04108 -13.89184 -13.70621 -13.50958 -13.49366 -13.32775 -13.23429 -12.97344 -12.95617 -12.79907 -12.73056 -12.64815 -12.37180 -12.26055 -12.16156 -12.08920 -11.90710 -11.88038 -11.49961 -11.32579 -11.21043 -11.14522 -10.51725 -9.89181 -9.62047 -8.10311 -6.25136 -0.42180 1.43107 1.46508 1.56077 1.86315 2.42656 2.47286 2.76292 3.18143 3.23367 3.66977 3.73625 3.94894 4.07108 4.11140 4.14752 4.25649 4.31247 4.38110 4.44942 4.62155 4.69828 4.70705 4.75820 4.80261 4.84355 4.92768 4.94107 4.97303 5.01421 5.08585 5.11323 5.14264 5.15363 5.31328 5.41435 5.41886 5.53588 5.60533 5.74109 5.84316 6.08170 6.18516 6.27891 6.84119 7.44923 8.94345 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014889 B = 0.004499 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.082143 B = 6221.661501 C = 7007.257909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.107 4.107 4 C 0.080 3.920 5 H 0.061 0.939 6 C 0.086 3.914 7 N -1.006 6.006 8 S 2.791 3.209 9 O -1.011 7.011 10 O -1.000 7.000 11 N -0.998 5.998 12 C 0.095 3.905 13 C 0.274 3.726 14 H 0.025 0.975 15 C -0.141 4.141 16 C -0.527 4.527 17 H 0.065 0.935 18 C 0.019 3.981 19 N -0.917 5.917 20 Si 0.957 3.043 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.084 3.916 25 C 0.058 3.942 26 O -0.380 6.380 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.019 0.981 42 H 0.264 0.736 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.056 0.944 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.763 -8.965 -3.665 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.145 4.145 4 C 0.020 3.980 5 H 0.078 0.922 6 C -0.039 4.039 7 N -0.847 5.847 8 S 2.803 3.197 9 O -0.995 6.995 10 O -0.984 6.984 11 N -0.839 5.839 12 C -0.051 4.051 13 C 0.170 3.830 14 H 0.043 0.957 15 C -0.200 4.200 16 C -0.566 4.566 17 H 0.083 0.917 18 C -0.181 4.181 19 N -0.556 5.556 20 Si 0.783 3.217 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.042 4.042 25 C -0.021 4.021 26 O -0.299 6.299 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.075 0.925 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.325 -9.366 -4.226 17.629 hybrid contribution 0.464 0.869 1.049 1.439 sum -13.861 -8.497 -3.176 16.565 Atomic orbital electron populations 1.21755 0.94809 1.02015 1.02122 1.21441 0.96477 0.95788 1.02025 1.21647 0.90189 0.98744 1.03953 1.22597 0.96238 0.91935 0.87214 0.92152 1.22320 0.78513 0.99263 1.03820 1.58118 1.17427 1.69132 1.40032 1.01387 0.72326 0.72891 0.73134 1.93522 1.42494 1.76226 1.87272 1.93493 1.74754 1.87422 1.42776 1.57661 1.40339 1.24327 1.61569 1.21440 0.92673 0.92290 0.98667 1.18395 0.83190 0.94728 0.86731 0.95740 1.21965 1.00852 0.99165 0.98060 1.21603 0.93538 1.41661 0.99809 0.91728 1.25646 0.95031 0.96012 1.01403 1.70012 1.03232 1.48332 1.34049 0.85525 0.78764 0.77861 0.79535 1.19061 1.20940 1.20885 1.22156 0.99259 0.94708 0.88029 1.22972 0.80849 0.94173 1.04061 1.87926 1.20960 1.82594 1.38379 0.92661 0.92129 0.92330 0.92095 0.92305 0.90659 0.88703 0.89992 0.87891 0.92560 0.90697 0.90406 0.93574 0.91041 0.96226 0.92702 0.89623 0.90599 0.92532 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 71.98 0.71 -1.26 16 2 C -0.12 -1.95 5.83 30.59 0.18 -1.77 16 3 C -0.11 -1.89 4.93 30.59 0.15 -1.73 16 4 C 0.08 1.84 2.78 30.69 0.09 1.92 16 5 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 6 C 0.09 2.27 6.00 86.36 0.52 2.79 16 7 N -1.01 -33.01 3.40 -511.62 -1.74 -34.75 16 8 S 2.79 109.82 6.16 -56.49 -0.35 109.47 16 9 O -1.01 -46.59 15.32 -128.00 -1.96 -48.55 16 10 O -1.00 -39.24 15.36 -128.00 -1.97 -41.20 16 11 N -1.00 -41.05 3.12 -520.46 -1.62 -42.68 16 12 C 0.09 3.23 9.90 127.77 1.27 4.50 16 13 C 0.27 13.39 2.62 44.24 0.12 13.51 16 14 H 0.02 1.36 6.91 -2.38 -0.02 1.35 16 15 C -0.14 -6.73 8.95 71.98 0.64 -6.09 16 16 C -0.53 -26.67 8.37 25.60 0.21 -26.46 16 17 H 0.06 3.18 7.65 -2.91 -0.02 3.16 16 18 C 0.02 0.98 5.30 84.66 0.45 1.43 16 19 N -0.92 -50.39 11.32 21.45 0.24 -50.15 16 20 Si 0.96 41.21 29.54 68.60 2.03 43.24 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 24 C 0.08 2.64 6.71 86.35 0.58 3.22 16 25 C 0.06 1.43 6.99 72.08 0.50 1.93 16 26 O -0.38 -9.63 9.94 -148.98 -1.48 -11.11 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.06 1.09 7.84 -2.39 -0.02 1.07 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 35 H 0.10 2.56 6.95 -2.39 -0.02 2.55 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 2.55 6.43 -2.39 -0.02 2.54 16 38 H 0.08 2.37 7.02 -2.39 -0.02 2.35 16 39 H 0.05 2.03 6.66 -2.39 -0.02 2.01 16 40 H 0.07 3.75 6.07 -2.38 -0.01 3.74 16 41 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 43 H 0.09 2.97 6.94 -2.39 -0.02 2.95 16 44 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 45 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -63.75 370.39 -0.49 -64.24 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.94 Total: 19.51 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 5.42 Total: -8.02 kcal Atomic # 7 Polarization: -124.46 SS G_CDS: -3.12 Total: -127.58 kcal Atomic # 8 Polarization: -95.46 SS G_CDS: -5.41 Total: -100.87 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: 109.82 SS G_CDS: -0.35 Total: 109.47 kcal Total: -63.75 -0.49 -64.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407977471.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.627 kcal (2) G-P(sol) polarization free energy of solvation -63.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds