Wall clock time and date at job start Tue Mar 31 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46882 * 2 1 4 4 H 1.08996 * 109.51478 * 54.90226 * 3 2 1 5 5 C 1.53293 * 109.51054 * 175.00523 * 3 2 1 6 6 N 1.47149 * 108.39112 * 67.67403 * 5 3 2 7 7 S 1.65595 * 120.98138 * 230.51769 * 6 5 3 8 8 O 1.42102 * 106.40430 * 336.45164 * 7 6 5 9 9 O 1.42106 * 106.40003 * 203.53260 * 7 6 5 10 10 N 1.65601 * 107.22339 * 89.99611 * 7 6 5 11 11 C 1.46501 * 119.99800 * 269.99884 * 10 7 6 12 12 C 1.46493 * 120.00092 * 89.99385 * 10 7 6 13 13 C 1.50706 * 109.47128 * 95.00402 * 12 10 7 14 14 H 1.08005 * 119.99758 * 359.97438 * 13 12 10 15 15 C 1.37871 * 120.00102 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 C 1.47152 * 118.03575 * 50.78236 * 6 5 3 22 22 C 1.53716 * 108.16243 * 309.16283 * 21 6 5 23 23 H 1.09004 * 109.65819 * 292.57187 * 22 21 6 24 24 C 1.53000 * 109.48585 * 172.39306 * 22 21 6 25 25 C 1.52995 * 109.47189 * 175.36105 * 24 22 21 26 26 O 1.42964 * 109.55393 * 294.77325 * 3 2 1 27 27 H 1.09001 * 109.47075 * 300.00089 * 1 2 3 28 28 H 1.09004 * 109.47501 * 59.99679 * 1 2 3 29 29 H 1.09002 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46676 * 240.00773 * 2 1 3 31 31 H 1.08987 * 109.47449 * 120.00096 * 2 1 3 32 32 H 1.09001 * 109.68111 * 307.94727 * 5 3 2 33 33 H 1.09007 * 109.68443 * 187.39784 * 5 3 2 34 34 H 1.09002 * 109.47261 * 270.00037 * 11 10 7 35 35 H 1.09004 * 109.46860 * 29.99391 * 11 10 7 36 36 H 1.08999 * 109.46818 * 149.99558 * 11 10 7 37 37 H 1.09001 * 109.47786 * 335.00675 * 12 10 7 38 38 H 1.09006 * 109.47401 * 215.00260 * 12 10 7 39 39 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 40 40 H 1.08997 * 109.68027 * 68.93968 * 21 6 5 41 41 H 1.08997 * 109.68607 * 189.49689 * 21 6 5 42 42 H 1.08995 * 109.47465 * 295.36969 * 24 22 21 43 43 H 1.09008 * 109.46549 * 55.37013 * 24 22 21 44 44 H 1.09003 * 109.47783 * 300.01068 * 25 24 22 45 45 H 1.09006 * 109.47284 * 60.00612 * 25 24 22 46 46 H 1.09002 * 109.47398 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6044 1.9827 0.8405 5 6 3.5677 1.4455 0.1258 6 7 4.1362 0.8787 -1.1074 7 16 5.2630 -0.3333 -1.0481 8 8 5.8819 -0.2437 0.2279 9 8 5.9867 -0.2684 -2.2693 10 7 4.4394 -1.7699 -1.0685 11 6 4.0219 -2.3928 0.1900 12 6 4.1283 -2.4178 -2.3450 13 6 5.1923 -3.4365 -2.6638 14 1 6.0178 -3.5859 -1.9837 15 6 5.1117 -4.1776 -3.8236 16 7 4.1067 -3.9952 -4.6520 17 14 6.4309 -5.4397 -4.2190 18 1 6.1149 -6.0974 -5.5123 19 1 7.7495 -4.7637 -4.3160 20 1 6.4766 -6.4618 -3.1426 21 6 3.6782 1.4248 -2.3948 22 6 2.1410 1.4191 -2.3981 23 1 1.7781 0.3913 -2.4077 24 6 1.6305 2.1530 -3.6397 25 6 0.1056 2.0477 -3.7035 26 8 1.6672 2.0818 -1.2232 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.8668 0.8388 0.9806 33 1 3.9233 2.4674 0.2580 34 1 4.8089 -3.0584 0.5447 35 1 3.8378 -1.6187 0.9350 36 1 3.1084 -2.9647 0.0269 37 1 4.0955 -1.6675 -3.1350 38 1 3.1601 -2.9136 -2.2744 39 1 3.4219 -3.3396 -4.4469 40 1 4.0445 2.4446 -2.5121 41 1 4.0503 0.8044 -3.2101 42 1 1.9204 3.2024 -3.5864 43 1 2.0635 1.7013 -4.5323 44 1 -0.1844 0.9983 -3.7567 45 1 -0.3275 2.4993 -2.8109 46 1 -0.2581 2.5701 -4.5883 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420735881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:46 Heat of formation + Delta-G solvation = -129.446456 kcal Electronic energy + Delta-G solvation = -28191.254567 eV Core-core repulsion = 24435.595095 eV Total energy + Delta-G solvation = -3755.659472 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.96007 -36.83713 -35.74532 -35.30693 -34.88752 -34.63166 -32.69555 -32.49898 -29.67583 -27.54917 -26.99900 -24.89420 -24.34137 -23.13838 -22.49591 -21.91300 -19.69400 -18.68389 -17.74319 -16.98161 -16.85547 -16.71854 -15.87141 -15.50571 -15.02088 -14.83179 -14.38697 -13.91652 -13.86264 -13.73463 -13.66985 -13.36208 -13.17622 -12.67247 -12.57857 -12.44414 -12.19596 -12.01708 -11.96128 -11.75839 -11.66162 -11.37592 -11.32857 -11.26065 -11.16982 -11.09927 -11.07194 -10.87129 -10.68353 -10.61486 -10.18952 -10.09880 -10.03950 -9.37654 -8.68818 -8.42379 -8.00236 -6.43577 -4.15400 1.00645 3.27473 3.43016 3.47092 3.64152 3.65090 3.94494 4.50718 4.52083 4.60445 4.77842 4.88709 4.91228 4.98134 5.07647 5.13306 5.25021 5.28438 5.30636 5.37969 5.42748 5.53995 5.54661 5.59659 5.70302 5.73296 5.88284 5.89351 5.92255 5.94747 6.00367 6.09097 6.12829 6.20024 6.25373 6.30568 6.34222 6.55053 6.81046 7.10262 7.17344 7.37678 7.95758 8.39853 8.75393 9.53161 10.94312 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014135 B = 0.005290 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.471326 B = 5291.774743 C = 5883.367793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.164 4.164 3 C 0.081 3.919 4 H 0.109 0.891 5 C 0.095 3.905 6 N -1.013 6.013 7 S 2.780 3.220 8 O -0.991 6.991 9 O -0.959 6.959 10 N -0.992 5.992 11 C 0.109 3.891 12 C 0.251 3.749 13 C -0.608 4.608 14 H 0.054 0.946 15 C 0.022 3.978 16 N -0.908 5.908 17 Si 1.068 2.932 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.287 1.287 21 C 0.095 3.905 22 C 0.074 3.926 23 H 0.071 0.929 24 C -0.116 4.116 25 C -0.147 4.147 26 O -0.365 6.365 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.266 0.734 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.761 11.913 8.127 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.201 4.201 3 C 0.021 3.979 4 H 0.127 0.873 5 C -0.032 4.032 6 N -0.851 5.851 7 S 2.789 3.211 8 O -0.975 6.975 9 O -0.943 6.943 10 N -0.834 5.834 11 C -0.037 4.037 12 C 0.128 3.872 13 C -0.647 4.647 14 H 0.072 0.928 15 C -0.182 4.182 16 N -0.544 5.544 17 Si 0.896 3.104 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.214 1.214 21 C -0.031 4.031 22 C 0.015 3.985 23 H 0.089 0.911 24 C -0.154 4.154 25 C -0.204 4.204 26 O -0.284 6.284 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.447 11.051 7.033 15.068 hybrid contribution -0.640 0.776 1.237 1.594 sum -8.087 11.827 8.271 16.543 Atomic orbital electron populations 1.21663 0.94975 1.01535 1.01958 1.22252 0.97175 0.97005 1.03706 1.22573 0.93390 0.93935 0.87956 0.87337 1.22041 0.94066 1.00383 0.86669 1.58589 1.61910 1.53472 1.11166 1.02119 0.73586 0.72305 0.73126 1.93531 1.73677 1.86963 1.43377 1.93625 1.68462 1.86118 1.46070 1.57570 1.75482 1.37134 1.13208 1.21239 1.00525 0.97688 0.84253 1.19092 0.96895 0.93058 0.78124 1.22287 1.10368 1.22894 1.09155 0.92798 1.25797 1.00460 0.99512 0.92465 1.70840 1.11432 1.34552 1.37611 0.83553 0.75030 0.75534 0.76282 1.20629 1.21207 1.21383 1.22156 0.94991 1.00728 0.85208 1.22627 0.92563 0.97319 0.86026 0.91075 1.21517 0.96942 1.01189 0.95702 1.21690 0.95190 1.01828 1.01734 1.87951 1.75751 1.51640 1.13020 0.92971 0.92236 0.92782 0.90359 0.90965 0.88875 0.90654 0.92999 0.93052 0.91549 0.95833 0.95851 0.92409 0.90671 0.88296 0.91053 0.90126 0.92783 0.92092 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.81 37.16 0.36 -1.09 16 2 C -0.16 -1.85 4.99 -26.73 -0.13 -1.99 16 3 C 0.08 0.89 3.30 -26.58 -0.09 0.80 16 4 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 5 C 0.09 1.17 5.94 -3.54 -0.02 1.15 16 6 N -1.01 -15.60 3.00 -112.82 -0.34 -15.94 16 7 S 2.78 55.55 6.03 -107.50 -0.65 54.90 16 8 O -0.99 -20.71 16.01 -57.17 -0.92 -21.62 16 9 O -0.96 -23.02 15.90 -57.17 -0.91 -23.93 16 10 N -0.99 -20.12 3.23 -123.05 -0.40 -20.52 16 11 C 0.11 1.84 10.33 59.85 0.62 2.46 16 12 C 0.25 6.05 4.43 -5.19 -0.02 6.03 16 13 C -0.61 -17.04 9.38 -34.44 -0.32 -17.36 16 14 H 0.05 1.54 7.81 -52.48 -0.41 1.13 16 15 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 16 N -0.91 -26.73 13.65 55.43 0.76 -25.98 16 17 Si 1.07 25.43 29.90 -169.99 -5.08 20.35 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.10 1.36 5.89 -3.31 -0.02 1.34 16 22 C 0.07 0.93 2.41 -26.36 -0.06 0.87 16 23 H 0.07 0.98 6.14 -51.93 -0.32 0.66 16 24 C -0.12 -1.25 5.65 -26.73 -0.15 -1.40 16 25 C -0.15 -1.47 9.81 37.15 0.36 -1.11 16 26 O -0.36 -4.44 9.31 -35.23 -0.33 -4.77 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.63 7.83 -51.93 -0.41 0.23 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.06 5.97 -51.93 -0.31 0.75 16 31 H 0.07 0.75 7.53 -51.94 -0.39 0.36 16 32 H 0.09 1.12 7.24 -51.93 -0.38 0.74 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.71 7.18 -51.93 -0.37 0.34 16 36 H 0.07 1.03 7.94 -51.93 -0.41 0.62 16 37 H 0.02 0.60 7.48 -51.93 -0.39 0.21 16 38 H 0.02 0.57 7.83 -51.93 -0.41 0.16 16 39 H 0.27 7.63 7.22 -40.82 -0.29 7.33 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.10 1.58 7.24 -51.93 -0.38 1.20 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.62 7.83 -51.93 -0.41 0.22 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 372.42 15.07 5.61 5.61 Total: -1.00 -33.49 372.42 -9.72 -43.21 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.89 Total: -1.55 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 0.43 Total: -9.76 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: 0.02 Total: -62.44 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -2.15 Total: -50.32 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.35 kcal Atomic # 16 Polarization: 55.55 SS G_CDS: -0.65 Total: 54.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.49 -9.72 -43.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420735881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.237 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds