Wall clock time and date at job start Tue Mar 31 2020 05:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46882 * 2 1 4 4 H 1.08996 * 109.51478 * 54.90226 * 3 2 1 5 5 C 1.53293 * 109.51054 * 175.00523 * 3 2 1 6 6 N 1.47149 * 108.39112 * 67.67403 * 5 3 2 7 7 S 1.65595 * 120.98138 * 230.51769 * 6 5 3 8 8 O 1.42102 * 106.40430 * 336.45164 * 7 6 5 9 9 O 1.42106 * 106.40003 * 203.53260 * 7 6 5 10 10 N 1.65601 * 107.22339 * 89.99611 * 7 6 5 11 11 C 1.46501 * 119.99800 * 269.99884 * 10 7 6 12 12 C 1.46493 * 120.00092 * 89.99385 * 10 7 6 13 13 C 1.50706 * 109.47128 * 95.00402 * 12 10 7 14 14 H 1.08005 * 119.99758 * 359.97438 * 13 12 10 15 15 C 1.37871 * 120.00102 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 C 1.47152 * 118.03575 * 50.78236 * 6 5 3 22 22 C 1.53716 * 108.16243 * 309.16283 * 21 6 5 23 23 H 1.09004 * 109.65819 * 292.57187 * 22 21 6 24 24 C 1.53000 * 109.48585 * 172.39306 * 22 21 6 25 25 C 1.52995 * 109.47189 * 175.36105 * 24 22 21 26 26 O 1.42964 * 109.55393 * 294.77325 * 3 2 1 27 27 H 1.09001 * 109.47075 * 300.00089 * 1 2 3 28 28 H 1.09004 * 109.47501 * 59.99679 * 1 2 3 29 29 H 1.09002 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46676 * 240.00773 * 2 1 3 31 31 H 1.08987 * 109.47449 * 120.00096 * 2 1 3 32 32 H 1.09001 * 109.68111 * 307.94727 * 5 3 2 33 33 H 1.09007 * 109.68443 * 187.39784 * 5 3 2 34 34 H 1.09002 * 109.47261 * 270.00037 * 11 10 7 35 35 H 1.09004 * 109.46860 * 29.99391 * 11 10 7 36 36 H 1.08999 * 109.46818 * 149.99558 * 11 10 7 37 37 H 1.09001 * 109.47786 * 335.00675 * 12 10 7 38 38 H 1.09006 * 109.47401 * 215.00260 * 12 10 7 39 39 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 40 40 H 1.08997 * 109.68027 * 68.93968 * 21 6 5 41 41 H 1.08997 * 109.68607 * 189.49689 * 21 6 5 42 42 H 1.08995 * 109.47465 * 295.36969 * 24 22 21 43 43 H 1.09008 * 109.46549 * 55.37013 * 24 22 21 44 44 H 1.09003 * 109.47783 * 300.01068 * 25 24 22 45 45 H 1.09006 * 109.47284 * 60.00612 * 25 24 22 46 46 H 1.09002 * 109.47398 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6044 1.9827 0.8405 5 6 3.5677 1.4455 0.1258 6 7 4.1362 0.8787 -1.1074 7 16 5.2630 -0.3333 -1.0481 8 8 5.8819 -0.2437 0.2279 9 8 5.9867 -0.2684 -2.2693 10 7 4.4394 -1.7699 -1.0685 11 6 4.0219 -2.3928 0.1900 12 6 4.1283 -2.4178 -2.3450 13 6 5.1923 -3.4365 -2.6638 14 1 6.0178 -3.5859 -1.9837 15 6 5.1117 -4.1776 -3.8236 16 7 4.1067 -3.9952 -4.6520 17 14 6.4309 -5.4397 -4.2190 18 1 6.1149 -6.0974 -5.5123 19 1 7.7495 -4.7637 -4.3160 20 1 6.4766 -6.4618 -3.1426 21 6 3.6782 1.4248 -2.3948 22 6 2.1410 1.4191 -2.3981 23 1 1.7781 0.3913 -2.4077 24 6 1.6305 2.1530 -3.6397 25 6 0.1056 2.0477 -3.7035 26 8 1.6672 2.0818 -1.2232 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.8668 0.8388 0.9806 33 1 3.9233 2.4674 0.2580 34 1 4.8089 -3.0584 0.5447 35 1 3.8378 -1.6187 0.9350 36 1 3.1084 -2.9647 0.0269 37 1 4.0955 -1.6675 -3.1350 38 1 3.1601 -2.9136 -2.2744 39 1 3.4219 -3.3396 -4.4469 40 1 4.0445 2.4446 -2.5121 41 1 4.0503 0.8044 -3.2101 42 1 1.9204 3.2024 -3.5864 43 1 2.0635 1.7013 -4.5323 44 1 -0.1844 0.9983 -3.7567 45 1 -0.3275 2.4993 -2.8109 46 1 -0.2581 2.5701 -4.5883 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420735881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:45 Heat of formation + Delta-G solvation = -152.619337 kcal Electronic energy + Delta-G solvation = -28192.259419 eV Core-core repulsion = 24435.595095 eV Total energy + Delta-G solvation = -3756.664324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.96223 -38.51974 -37.48474 -37.01249 -35.98617 -35.61791 -34.71989 -33.40323 -30.63598 -29.37553 -28.04775 -26.65839 -25.32030 -24.50536 -24.07786 -22.83465 -20.74314 -20.07203 -19.46120 -18.62326 -18.50575 -17.87413 -17.27226 -16.59993 -16.30110 -15.95085 -15.67641 -15.64401 -15.32560 -15.00334 -14.82419 -14.59641 -14.29498 -14.13135 -13.99645 -13.58888 -13.57083 -13.44922 -13.29542 -13.24796 -13.00335 -12.92211 -12.85668 -12.65009 -12.46474 -12.42891 -12.15024 -11.95893 -11.95331 -11.92686 -11.72456 -11.37633 -11.25614 -11.03570 -10.58189 -9.82188 -9.78687 -8.67433 -6.41204 -0.55394 1.50629 1.58260 1.77559 1.82833 2.39404 2.54251 2.71880 3.11105 3.17055 3.55743 3.65231 3.80039 3.91171 3.97637 4.00707 4.16712 4.20428 4.25406 4.40386 4.47853 4.51395 4.61842 4.62083 4.64862 4.68913 4.74546 4.80808 4.83737 4.91271 4.97088 5.01423 5.11618 5.13356 5.22275 5.23700 5.26921 5.38140 5.40346 5.47694 5.69985 5.84420 6.18124 6.21474 6.52243 7.34142 8.70309 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014135 B = 0.005290 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.471326 B = 5291.774743 C = 5883.367793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.166 4.166 3 C 0.082 3.918 4 H 0.142 0.858 5 C 0.086 3.914 6 N -1.004 6.004 7 S 2.791 3.209 8 O -1.002 7.002 9 O -1.007 7.007 10 N -0.996 5.996 11 C 0.102 3.898 12 C 0.266 3.734 13 C -0.625 4.625 14 H 0.041 0.959 15 C -0.025 4.025 16 N -0.928 5.928 17 Si 1.107 2.893 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.266 1.266 21 C 0.091 3.909 22 C 0.082 3.918 23 H 0.056 0.944 24 C -0.115 4.115 25 C -0.142 4.142 26 O -0.363 6.363 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.008 0.992 38 H 0.023 0.977 39 H 0.259 0.741 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.673 12.845 9.535 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.204 4.204 3 C 0.023 3.977 4 H 0.159 0.841 5 C -0.039 4.039 6 N -0.846 5.846 7 S 2.801 3.199 8 O -0.986 6.986 9 O -0.991 6.991 10 N -0.837 5.837 11 C -0.044 4.044 12 C 0.142 3.858 13 C -0.664 4.664 14 H 0.059 0.941 15 C -0.224 4.224 16 N -0.565 5.565 17 Si 0.929 3.071 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.035 4.035 22 C 0.022 3.978 23 H 0.074 0.926 24 C -0.153 4.153 25 C -0.199 4.199 26 O -0.282 6.282 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.026 0.974 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.368 11.986 8.481 16.900 hybrid contribution -0.391 0.574 0.877 1.119 sum -8.758 12.560 9.359 17.946 Atomic orbital electron populations 1.21615 0.93999 1.01561 1.02434 1.22275 0.98054 0.97122 1.02948 1.22752 0.92333 0.94172 0.88395 0.84113 1.22413 0.95085 1.01209 0.85212 1.58185 1.61325 1.52161 1.12893 1.01510 0.73808 0.72664 0.71928 1.93505 1.74460 1.87239 1.43373 1.93558 1.70553 1.86863 1.48110 1.57455 1.75534 1.37750 1.12977 1.21476 1.00682 0.98780 0.83430 1.18674 0.95669 0.91912 0.79554 1.22649 1.10880 1.23821 1.09075 0.94068 1.27108 1.01652 1.01149 0.92521 1.70934 1.12121 1.35155 1.38249 0.83065 0.72909 0.74202 0.76950 1.20122 1.20690 1.19112 1.22303 0.96376 1.00857 0.83948 1.22513 0.91049 0.97028 0.87196 0.92572 1.21544 0.97569 1.01538 0.94693 1.21646 0.94391 1.01496 1.02414 1.87960 1.75529 1.51588 1.13121 0.91092 0.93076 0.93060 0.92975 0.89887 0.88214 0.88843 0.93885 0.89804 0.90315 0.97379 0.95901 0.93136 0.88916 0.90675 0.89909 0.90356 0.93615 0.92031 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.81 71.98 0.71 -1.80 16 2 C -0.17 -3.43 4.99 30.59 0.15 -3.28 16 3 C 0.08 1.58 3.30 30.69 0.10 1.68 16 4 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 5 C 0.09 1.91 5.94 86.35 0.51 2.43 16 6 N -1.00 -30.19 3.00 -510.86 -1.53 -31.72 16 7 S 2.79 112.14 6.03 -56.49 -0.34 111.80 16 8 O -1.00 -41.15 16.01 -128.00 -2.05 -43.20 16 9 O -1.01 -49.86 15.90 -128.00 -2.04 -51.90 16 10 N -1.00 -40.72 3.23 -543.21 -1.75 -42.47 16 11 C 0.10 3.34 10.33 127.77 1.32 4.66 16 12 C 0.27 13.18 4.43 85.64 0.38 13.56 16 13 C -0.63 -35.71 9.38 25.60 0.24 -35.47 16 14 H 0.04 2.40 7.81 -2.91 -0.02 2.38 16 15 C -0.02 -1.43 5.46 84.65 0.46 -0.97 16 16 N -0.93 -55.46 13.65 21.45 0.29 -55.17 16 17 Si 1.11 51.16 29.90 68.60 2.05 53.21 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 C 0.09 2.58 5.89 86.50 0.51 3.09 16 22 C 0.08 2.00 2.41 30.84 0.07 2.08 16 23 H 0.06 1.56 6.14 -2.39 -0.01 1.55 16 24 C -0.12 -2.39 5.65 30.59 0.17 -2.22 16 25 C -0.14 -2.66 9.81 71.98 0.71 -1.96 16 26 O -0.36 -8.02 9.31 -148.98 -1.39 -9.41 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 1.01 7.83 -2.38 -0.02 0.99 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 1.37 5.97 -2.39 -0.01 1.36 16 31 H 0.08 1.51 7.53 -2.39 -0.02 1.49 16 32 H 0.10 2.12 7.24 -2.39 -0.02 2.10 16 33 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 2.17 7.18 -2.38 -0.02 2.15 16 36 H 0.08 2.37 7.94 -2.39 -0.02 2.35 16 37 H 0.01 0.44 7.48 -2.39 -0.02 0.42 16 38 H 0.02 1.14 7.83 -2.38 -0.02 1.12 16 39 H 0.26 15.30 7.22 -92.71 -0.67 14.63 16 40 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.07 2.51 7.24 -2.39 -0.02 2.49 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 44 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.06 1.14 7.83 -2.38 -0.02 1.13 16 46 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -72.48 372.42 -0.37 -72.86 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.04 Total: 14.20 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 5.34 Total: -18.20 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -2.99 Total: -129.36 kcal Atomic # 8 Polarization: -99.03 SS G_CDS: -5.47 Total: -104.50 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 2.05 Total: 53.21 kcal Atomic # 16 Polarization: 112.14 SS G_CDS: -0.34 Total: 111.80 kcal Total: -72.48 -0.37 -72.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420735881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.764 kcal (2) G-P(sol) polarization free energy of solvation -72.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds