Wall clock time and date at job start Tue Mar 31 2020 05:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46999 * 2 1 4 4 H 1.09001 * 109.55256 * 305.13132 * 3 2 1 5 5 C 1.53296 * 109.51171 * 185.00043 * 3 2 1 6 6 N 1.47151 * 108.38396 * 187.77404 * 5 3 2 7 7 S 1.65594 * 120.98317 * 230.55539 * 6 5 3 8 8 O 1.42098 * 106.40124 * 203.53886 * 7 6 5 9 9 O 1.42098 * 106.40155 * 336.46575 * 7 6 5 10 10 N 1.65602 * 107.21618 * 90.00125 * 7 6 5 11 11 C 1.46505 * 119.99750 * 90.00112 * 10 7 6 12 12 C 1.46504 * 120.00325 * 270.00090 * 10 7 6 13 13 C 1.50696 * 109.46915 * 94.99939 * 12 10 7 14 14 H 1.08003 * 120.00440 * 0.02562 * 13 12 10 15 15 C 1.37876 * 119.99714 * 180.02562 * 13 12 10 16 16 N 1.31517 * 120.00238 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99991 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47652 * 59.99443 * 17 15 13 19 19 H 1.48508 * 109.47258 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46932 * 299.99311 * 17 15 13 21 21 C 1.47158 * 118.03392 * 50.53618 * 6 5 3 22 22 C 1.53298 * 108.38580 * 309.46763 * 21 6 5 23 23 H 1.09005 * 109.50828 * 292.32410 * 22 21 6 24 24 C 1.52998 * 109.51307 * 172.22770 * 22 21 6 25 25 C 1.52999 * 109.47178 * 174.99471 * 24 22 21 26 26 O 1.42956 * 109.22271 * 52.29529 * 22 21 6 27 27 H 1.09002 * 109.46812 * 299.99856 * 1 2 3 28 28 H 1.09003 * 109.47449 * 59.99685 * 1 2 3 29 29 H 1.09007 * 109.47021 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46812 * 240.00143 * 2 1 3 31 31 H 1.09003 * 109.47449 * 120.00315 * 2 1 3 32 32 H 1.09004 * 109.68264 * 307.50193 * 5 3 2 33 33 H 1.09005 * 109.67804 * 68.05432 * 5 3 2 34 34 H 1.08991 * 109.47170 * 90.00494 * 11 10 7 35 35 H 1.09006 * 109.46589 * 210.00104 * 11 10 7 36 36 H 1.09001 * 109.47357 * 329.99429 * 11 10 7 37 37 H 1.08997 * 109.47143 * 214.99954 * 12 10 7 38 38 H 1.08998 * 109.46643 * 335.00076 * 12 10 7 39 39 H 0.96995 * 120.00165 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.67763 * 69.18441 * 21 6 5 41 41 H 1.08991 * 109.68056 * 189.74082 * 21 6 5 42 42 H 1.09003 * 109.46944 * 294.99764 * 24 22 21 43 43 H 1.09003 * 109.46876 * 54.99344 * 24 22 21 44 44 H 1.09005 * 109.46768 * 59.99635 * 25 24 22 45 45 H 1.08993 * 109.47044 * 179.97438 * 25 24 22 46 46 H 1.08991 * 109.47055 * 300.00278 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6043 1.9835 -0.8400 5 6 3.5678 1.4455 -0.1259 6 7 4.0465 2.8239 0.0644 7 16 5.0843 3.5233 -1.0200 8 8 5.7639 4.5545 -0.3173 9 8 5.7560 2.4574 -1.6772 10 7 4.1589 4.2729 -2.1707 11 6 3.7536 5.6690 -1.9893 12 6 3.7456 3.5400 -3.3700 13 6 2.3704 2.9620 -3.1564 14 1 1.8555 3.1247 -2.2210 15 6 1.7694 2.2256 -4.1551 16 7 2.3961 2.0279 -5.2944 17 14 0.0644 1.5097 -3.8907 18 1 -0.8986 2.6088 -3.6264 19 1 -0.3546 0.7667 -5.1064 20 1 0.0907 0.5846 -2.7292 21 6 3.5753 3.5627 1.2466 22 6 2.0471 3.4565 1.3058 23 1 1.6115 4.0056 0.4710 24 6 1.5444 4.0478 2.6243 25 6 0.0144 4.0555 2.6293 26 8 1.6674 2.0807 1.2238 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 4.0003 0.7980 0.6368 33 1 3.8552 1.0905 -1.1157 34 1 4.5052 6.3254 -2.4277 35 1 2.7948 5.8357 -2.4804 36 1 3.6590 5.8846 -0.9251 37 1 3.7258 4.2194 -4.2222 38 1 4.4525 2.7335 -3.5646 39 1 1.9731 1.5101 -5.9971 40 1 4.0085 3.1283 2.1476 41 1 3.8677 4.6095 1.1659 42 1 1.9075 3.4433 3.4554 43 1 1.9133 5.0682 2.7289 44 1 -0.3544 3.0351 2.5246 45 1 -0.3437 4.4764 3.5688 46 1 -0.3486 4.6600 1.7982 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420735885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:50 Heat of formation + Delta-G solvation = -130.989538 kcal Electronic energy + Delta-G solvation = -28426.968711 eV Core-core repulsion = 24671.242325 eV Total energy + Delta-G solvation = -3755.726385 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.38210 -36.77879 -35.52794 -35.27035 -34.86396 -34.54666 -32.54916 -32.35088 -29.28310 -27.83671 -26.79691 -25.13210 -24.17081 -22.66776 -22.24144 -20.98207 -20.47995 -18.39168 -17.35863 -16.85930 -16.71135 -16.32395 -15.88819 -15.25752 -14.87237 -14.60644 -14.36096 -13.97080 -13.72119 -13.51044 -13.46082 -13.33396 -13.18720 -12.41533 -12.23316 -12.20680 -12.13139 -11.86510 -11.75965 -11.75530 -11.58888 -11.25366 -11.22184 -11.14662 -11.06186 -10.96593 -10.88159 -10.65149 -10.63334 -10.42536 -10.29249 -10.04704 -9.84108 -9.55106 -8.55374 -8.41790 -8.07058 -6.16853 -4.24501 1.18243 3.19640 3.26057 3.27707 3.37524 3.87302 4.07082 4.30029 4.64998 4.95288 5.01508 5.06109 5.15835 5.17302 5.17863 5.36934 5.41724 5.46388 5.53486 5.57074 5.64584 5.74727 5.87036 5.90358 5.93038 5.95310 6.01799 6.03007 6.12778 6.18773 6.22527 6.29204 6.32043 6.41019 6.47642 6.53144 6.59962 6.80028 7.28992 7.38001 7.52408 7.58206 7.79696 8.09243 8.79729 9.41533 10.90755 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009549 B = 0.008590 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.512545 B = 3258.788507 C = 4887.072057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C 0.072 3.928 4 H 0.088 0.912 5 C 0.104 3.896 6 N -1.007 6.007 7 S 2.786 3.214 8 O -0.998 6.998 9 O -0.975 6.975 10 N -0.997 5.997 11 C 0.107 3.893 12 C 0.244 3.756 13 C -0.541 4.541 14 H 0.063 0.937 15 C 0.068 3.932 16 N -0.887 5.887 17 Si 0.878 3.122 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.257 1.257 21 C 0.097 3.903 22 C 0.079 3.921 23 H 0.065 0.935 24 C -0.114 4.114 25 C -0.148 4.148 26 O -0.372 6.372 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.038 0.962 38 H 0.050 0.950 39 H 0.265 0.735 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.957 1.846 12.892 13.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C 0.014 3.986 4 H 0.105 0.895 5 C -0.022 4.022 6 N -0.845 5.845 7 S 2.795 3.205 8 O -0.982 6.982 9 O -0.959 6.959 10 N -0.839 5.839 11 C -0.040 4.040 12 C 0.122 3.878 13 C -0.580 4.580 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.525 5.525 17 Si 0.705 3.295 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.183 1.183 21 C -0.029 4.029 22 C 0.019 3.981 23 H 0.083 0.917 24 C -0.152 4.152 25 C -0.205 4.205 26 O -0.292 6.292 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.079 1.641 12.852 13.122 hybrid contribution -1.310 -0.228 -0.312 1.366 sum -3.388 1.413 12.540 13.066 Atomic orbital electron populations 1.21808 0.95527 1.01131 1.02450 1.21457 0.96679 0.94297 1.02498 1.22713 0.93615 0.94518 0.87782 0.89452 1.21990 0.94947 0.81758 1.03501 1.58335 1.65954 1.22932 1.37231 1.01813 0.73649 0.72787 0.72258 1.93527 1.72036 1.58418 1.74196 1.93571 1.71832 1.55976 1.74486 1.57690 1.70686 1.20019 1.35503 1.21216 1.00918 0.81810 1.00036 1.19227 0.95657 0.91815 0.81123 1.21516 1.01776 1.33549 1.01185 0.91861 1.24924 0.97697 0.95979 0.94978 1.69917 1.37981 1.39600 1.05031 0.86928 0.84473 0.79797 0.78318 1.20301 1.21318 1.18257 1.21998 0.95236 0.96969 0.88697 1.22446 0.93167 0.84087 0.98388 0.91668 1.21501 0.96863 1.00505 0.96290 1.21687 0.95178 1.02543 1.01092 1.87841 1.79849 1.22918 1.38564 0.92322 0.92267 0.93234 0.90183 0.91573 0.91574 0.87709 0.93684 0.90791 0.93132 0.94425 0.93157 0.92481 0.90981 0.89221 0.91127 0.90644 0.91905 0.93049 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.81 37.16 0.36 -1.82 16 2 C -0.11 -1.65 5.64 -26.73 -0.15 -1.80 16 3 C 0.07 1.20 2.78 -26.57 -0.07 1.12 16 4 H 0.09 1.67 5.78 -51.93 -0.30 1.37 16 5 C 0.10 1.77 5.86 -3.53 -0.02 1.75 16 6 N -1.01 -17.41 3.40 -113.06 -0.38 -17.79 16 7 S 2.79 55.92 6.07 -107.50 -0.65 55.27 16 8 O -1.00 -20.44 16.01 -57.17 -0.92 -21.36 16 9 O -0.97 -22.57 15.49 -57.17 -0.89 -23.46 16 10 N -1.00 -20.30 3.23 -123.05 -0.40 -20.70 16 11 C 0.11 1.80 10.31 59.85 0.62 2.42 16 12 C 0.24 5.88 5.41 -5.19 -0.03 5.85 16 13 C -0.54 -13.35 9.18 -34.44 -0.32 -13.66 16 14 H 0.06 1.49 5.72 -52.48 -0.30 1.19 16 15 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -24.54 13.29 55.43 0.74 -23.80 16 17 Si 0.88 19.42 29.54 -169.99 -5.02 14.40 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.26 -5.26 5.21 56.52 0.29 -4.97 16 21 C 0.10 1.40 5.86 -3.53 -0.02 1.38 16 22 C 0.08 1.09 2.78 -26.58 -0.07 1.01 16 23 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 24 C -0.11 -1.23 5.64 -26.73 -0.15 -1.38 16 25 C -0.15 -1.55 9.81 37.16 0.36 -1.19 16 26 O -0.37 -5.70 9.12 -35.23 -0.32 -6.02 16 27 H 0.06 0.81 7.83 -51.93 -0.41 0.40 16 28 H 0.06 0.96 6.24 -51.93 -0.32 0.63 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.10 1.99 7.25 -51.93 -0.38 1.62 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 36 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 37 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 38 H 0.05 1.34 6.91 -51.93 -0.36 0.98 16 39 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 1.21 7.25 -51.93 -0.38 0.83 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.73 7.83 -51.93 -0.41 0.33 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -29.73 370.76 -9.83 -39.56 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.99 Total: 2.99 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 0.41 Total: -4.67 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -0.04 Total: -62.30 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -2.12 Total: -50.84 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Atomic # 16 Polarization: 55.92 SS G_CDS: -0.65 Total: 55.27 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.73 -9.83 -39.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420735885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.428 kcal (2) G-P(sol) polarization free energy of solvation -29.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds