Wall clock time and date at job start Tue Mar 31 2020 05:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46999 * 2 1 4 4 H 1.09001 * 109.55256 * 305.13132 * 3 2 1 5 5 C 1.53296 * 109.51171 * 185.00043 * 3 2 1 6 6 N 1.47151 * 108.38396 * 187.77404 * 5 3 2 7 7 S 1.65594 * 120.98317 * 230.55539 * 6 5 3 8 8 O 1.42098 * 106.40124 * 203.53886 * 7 6 5 9 9 O 1.42098 * 106.40155 * 336.46575 * 7 6 5 10 10 N 1.65602 * 107.21618 * 90.00125 * 7 6 5 11 11 C 1.46505 * 119.99750 * 90.00112 * 10 7 6 12 12 C 1.46504 * 120.00325 * 270.00090 * 10 7 6 13 13 C 1.50696 * 109.46915 * 94.99939 * 12 10 7 14 14 H 1.08003 * 120.00440 * 0.02562 * 13 12 10 15 15 C 1.37876 * 119.99714 * 180.02562 * 13 12 10 16 16 N 1.31517 * 120.00238 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99991 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47652 * 59.99443 * 17 15 13 19 19 H 1.48508 * 109.47258 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46932 * 299.99311 * 17 15 13 21 21 C 1.47158 * 118.03392 * 50.53618 * 6 5 3 22 22 C 1.53298 * 108.38580 * 309.46763 * 21 6 5 23 23 H 1.09005 * 109.50828 * 292.32410 * 22 21 6 24 24 C 1.52998 * 109.51307 * 172.22770 * 22 21 6 25 25 C 1.52999 * 109.47178 * 174.99471 * 24 22 21 26 26 O 1.42956 * 109.22271 * 52.29529 * 22 21 6 27 27 H 1.09002 * 109.46812 * 299.99856 * 1 2 3 28 28 H 1.09003 * 109.47449 * 59.99685 * 1 2 3 29 29 H 1.09007 * 109.47021 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46812 * 240.00143 * 2 1 3 31 31 H 1.09003 * 109.47449 * 120.00315 * 2 1 3 32 32 H 1.09004 * 109.68264 * 307.50193 * 5 3 2 33 33 H 1.09005 * 109.67804 * 68.05432 * 5 3 2 34 34 H 1.08991 * 109.47170 * 90.00494 * 11 10 7 35 35 H 1.09006 * 109.46589 * 210.00104 * 11 10 7 36 36 H 1.09001 * 109.47357 * 329.99429 * 11 10 7 37 37 H 1.08997 * 109.47143 * 214.99954 * 12 10 7 38 38 H 1.08998 * 109.46643 * 335.00076 * 12 10 7 39 39 H 0.96995 * 120.00165 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.67763 * 69.18441 * 21 6 5 41 41 H 1.08991 * 109.68056 * 189.74082 * 21 6 5 42 42 H 1.09003 * 109.46944 * 294.99764 * 24 22 21 43 43 H 1.09003 * 109.46876 * 54.99344 * 24 22 21 44 44 H 1.09005 * 109.46768 * 59.99635 * 25 24 22 45 45 H 1.08993 * 109.47044 * 179.97438 * 25 24 22 46 46 H 1.08991 * 109.47055 * 300.00278 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6043 1.9835 -0.8400 5 6 3.5678 1.4455 -0.1259 6 7 4.0465 2.8239 0.0644 7 16 5.0843 3.5233 -1.0200 8 8 5.7639 4.5545 -0.3173 9 8 5.7560 2.4574 -1.6772 10 7 4.1589 4.2729 -2.1707 11 6 3.7536 5.6690 -1.9893 12 6 3.7456 3.5400 -3.3700 13 6 2.3704 2.9620 -3.1564 14 1 1.8555 3.1247 -2.2210 15 6 1.7694 2.2256 -4.1551 16 7 2.3961 2.0279 -5.2944 17 14 0.0644 1.5097 -3.8907 18 1 -0.8986 2.6088 -3.6264 19 1 -0.3546 0.7667 -5.1064 20 1 0.0907 0.5846 -2.7292 21 6 3.5753 3.5627 1.2466 22 6 2.0471 3.4565 1.3058 23 1 1.6115 4.0056 0.4710 24 6 1.5444 4.0478 2.6243 25 6 0.0144 4.0555 2.6293 26 8 1.6674 2.0807 1.2238 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 4.0003 0.7980 0.6368 33 1 3.8552 1.0905 -1.1157 34 1 4.5052 6.3254 -2.4277 35 1 2.7948 5.8357 -2.4804 36 1 3.6590 5.8846 -0.9251 37 1 3.7258 4.2194 -4.2222 38 1 4.4525 2.7335 -3.5646 39 1 1.9731 1.5101 -5.9971 40 1 4.0085 3.1283 2.1476 41 1 3.8677 4.6095 1.1659 42 1 1.9075 3.4433 3.4554 43 1 1.9133 5.0682 2.7289 44 1 -0.3544 3.0351 2.5246 45 1 -0.3437 4.4764 3.5688 46 1 -0.3486 4.6600 1.7982 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420735885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:49 Heat of formation + Delta-G solvation = -150.847125 kcal Electronic energy + Delta-G solvation = -28427.829800 eV Core-core repulsion = 24671.242325 eV Total energy + Delta-G solvation = -3756.587475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.59618 -38.45211 -37.23715 -36.96598 -35.95201 -35.85474 -34.48177 -33.39242 -30.43073 -29.64911 -28.01921 -26.79397 -25.32084 -24.31150 -23.57557 -22.03240 -21.72227 -19.92845 -18.92329 -18.58838 -18.27894 -17.76799 -17.44222 -16.58408 -16.41900 -15.91204 -15.71916 -15.23304 -15.09803 -15.06109 -14.73428 -14.52493 -14.28037 -14.04416 -13.96331 -13.55301 -13.43651 -13.38036 -13.15420 -13.08750 -13.02864 -12.86319 -12.66344 -12.62818 -12.49400 -12.35103 -12.14259 -12.05404 -11.92368 -11.74740 -11.68020 -11.58108 -11.21604 -10.98085 -10.53634 -9.81771 -9.68119 -8.16183 -6.29877 -0.40792 1.44146 1.44330 1.51317 1.85709 2.41710 2.49507 2.73024 3.15653 3.24941 3.70186 3.73058 3.94574 3.99603 4.11409 4.15078 4.21647 4.31687 4.40026 4.45983 4.53456 4.60861 4.66513 4.72030 4.73676 4.85341 4.86913 4.93700 5.00299 5.02390 5.10913 5.14556 5.16008 5.23078 5.27052 5.36221 5.41606 5.44915 5.51440 5.52807 5.75880 5.91367 6.10504 6.32120 6.81540 7.40369 8.91551 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009549 B = 0.008590 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.512545 B = 3258.788507 C = 4887.072057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.078 3.922 4 H 0.059 0.941 5 C 0.102 3.898 6 N -1.004 6.004 7 S 2.796 3.204 8 O -1.000 7.000 9 O -1.011 7.011 10 N -1.003 6.003 11 C 0.098 3.902 12 C 0.258 3.742 13 C -0.534 4.534 14 H 0.074 0.926 15 C 0.018 3.982 16 N -0.929 5.929 17 Si 0.932 3.068 18 H -0.274 1.274 19 H -0.295 1.295 20 H -0.233 1.233 21 C 0.091 3.909 22 C 0.075 3.925 23 H 0.051 0.949 24 C -0.108 4.108 25 C -0.146 4.146 26 O -0.370 6.370 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.019 0.981 38 H 0.018 0.982 39 H 0.264 0.736 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 2.126 15.755 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C 0.019 3.981 4 H 0.076 0.924 5 C -0.024 4.024 6 N -0.844 5.844 7 S 2.806 3.194 8 O -0.984 6.984 9 O -0.996 6.996 10 N -0.844 5.844 11 C -0.047 4.047 12 C 0.134 3.866 13 C -0.573 4.573 14 H 0.092 0.908 15 C -0.181 4.181 16 N -0.568 5.568 17 Si 0.757 3.243 18 H -0.200 1.200 19 H -0.221 1.221 20 H -0.156 1.156 21 C -0.035 4.035 22 C 0.016 3.984 23 H 0.069 0.931 24 C -0.146 4.146 25 C -0.204 4.204 26 O -0.289 6.289 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.115 0.885 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.372 1.952 15.749 16.223 hybrid contribution -0.861 -0.245 -1.134 1.445 sum -4.234 1.708 14.615 15.311 Atomic orbital electron populations 1.21774 0.94972 1.02163 1.01651 1.21496 0.97137 0.93226 1.03211 1.22540 0.92759 0.95356 0.87427 0.92357 1.22042 0.95714 0.81836 1.02797 1.58118 1.65648 1.23161 1.37517 1.01313 0.73689 0.72203 0.72176 1.93514 1.72384 1.58484 1.74039 1.93520 1.73216 1.57276 1.75549 1.57604 1.70778 1.21407 1.34647 1.21462 1.01305 0.79984 1.01959 1.18793 0.94907 0.90792 0.82081 1.21746 1.01678 1.32579 1.01289 0.90792 1.25699 1.01264 0.96486 0.94683 1.70056 1.39772 1.40926 1.06066 0.86055 0.79995 0.79542 0.78712 1.19974 1.22083 1.15616 1.22321 0.95729 0.97431 0.87970 1.22623 0.92716 0.83317 0.99782 0.93069 1.21532 0.96929 1.01585 0.94524 1.21671 0.95014 1.01731 1.01945 1.87855 1.79792 1.23725 1.37537 0.91758 0.94294 0.91322 0.90856 0.89507 0.89336 0.90396 0.92513 0.90738 0.90490 0.96280 0.96430 0.92701 0.88969 0.88131 0.90197 0.88508 0.93276 0.91102 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.81 71.98 0.71 -3.21 16 2 C -0.11 -3.13 5.64 30.60 0.17 -2.95 16 3 C 0.08 2.48 2.78 30.70 0.09 2.57 16 4 H 0.06 2.20 5.78 -2.39 -0.01 2.18 16 5 C 0.10 3.39 5.86 86.35 0.51 3.90 16 6 N -1.00 -33.54 3.40 -511.60 -1.74 -35.28 16 7 S 2.80 111.73 6.07 -56.49 -0.34 111.38 16 8 O -1.00 -39.64 16.01 -128.00 -2.05 -41.69 16 9 O -1.01 -48.08 15.49 -128.00 -1.98 -50.06 16 10 N -1.00 -41.08 3.23 -543.22 -1.75 -42.83 16 11 C 0.10 3.21 10.31 127.77 1.32 4.53 16 12 C 0.26 12.86 5.41 85.63 0.46 13.33 16 13 C -0.53 -26.78 9.18 25.60 0.24 -26.54 16 14 H 0.07 3.50 5.72 -2.91 -0.02 3.49 16 15 C 0.02 0.96 5.46 84.65 0.46 1.43 16 16 N -0.93 -52.96 13.29 21.45 0.28 -52.67 16 17 Si 0.93 40.04 29.54 68.60 2.03 42.07 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.23 -8.97 5.21 99.48 0.52 -8.45 16 21 C 0.09 2.36 5.86 86.35 0.51 2.86 16 22 C 0.07 1.88 2.78 30.69 0.09 1.96 16 23 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 24 C -0.11 -1.94 5.64 30.59 0.17 -1.77 16 25 C -0.15 -2.65 9.81 71.98 0.71 -1.94 16 26 O -0.37 -10.45 9.12 -148.98 -1.36 -11.81 16 27 H 0.06 1.61 7.83 -2.39 -0.02 1.59 16 28 H 0.04 1.17 6.24 -2.39 -0.01 1.16 16 29 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.08 3.03 7.25 -2.38 -0.02 3.01 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 2.42 8.07 -2.38 -0.02 2.40 16 36 H 0.08 2.09 7.79 -2.39 -0.02 2.07 16 37 H 0.02 1.01 8.11 -2.39 -0.02 0.99 16 38 H 0.02 0.99 6.91 -2.39 -0.02 0.98 16 39 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 40 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.10 2.40 7.25 -2.39 -0.02 2.39 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.05 1.02 7.83 -2.38 -0.02 1.00 16 45 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -64.86 370.76 -0.74 -65.60 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.76 Total: 21.14 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 5.42 Total: -5.85 kcal Atomic # 7 Polarization: -127.57 SS G_CDS: -3.21 Total: -130.78 kcal Atomic # 8 Polarization: -98.17 SS G_CDS: -5.39 Total: -103.56 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Atomic # 16 Polarization: 111.73 SS G_CDS: -0.34 Total: 111.38 kcal Total: -64.86 -0.74 -65.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420735885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.246 kcal (2) G-P(sol) polarization free energy of solvation -64.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds