Wall clock time and date at job start Tue Mar 31 2020 05:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99570 * 2 1 4 4 C 1.53003 * 109.46676 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47566 * 65.41274 * 4 3 2 6 6 C 1.46500 * 119.99802 * 81.88500 * 5 4 3 7 7 C 1.50699 * 109.47146 * 85.00360 * 6 5 4 8 8 H 1.07995 * 119.99771 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00009 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99611 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99936 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46798 * 90.00437 * 11 9 7 13 13 H 1.48500 * 109.46834 * 210.00205 * 11 9 7 14 14 H 1.48495 * 109.47247 * 330.00214 * 11 9 7 15 15 S 1.65595 * 120.00282 * 261.88838 * 5 4 3 16 16 O 1.42095 * 106.40223 * 16.09580 * 15 5 4 17 17 O 1.42097 * 106.40443 * 149.01444 * 15 5 4 18 18 N 1.65602 * 107.21798 * 262.55503 * 15 5 4 19 19 C 1.47060 * 136.05880 * 274.68391 * 18 15 5 20 20 C 1.53755 * 87.88959 * 152.96231 * 19 18 15 21 21 C 1.47068 * 136.05608 * 95.05979 * 18 15 5 22 22 H 1.08997 * 113.47086 * 92.30494 * 21 18 15 23 23 C 1.53001 * 113.46394 * 321.91963 * 21 18 15 24 24 C 1.53006 * 109.46832 * 177.72161 * 23 21 18 25 25 C 1.52996 * 109.47277 * 297.71920 * 23 21 18 26 26 H 1.09001 * 109.47466 * 300.00275 * 1 2 3 27 27 H 1.08999 * 109.47285 * 59.99860 * 1 2 3 28 28 H 1.08994 * 109.47025 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47295 * 60.00501 * 3 2 1 30 30 H 1.08999 * 109.47172 * 299.99300 * 3 2 1 31 31 H 1.08996 * 109.47082 * 185.41819 * 4 3 2 32 32 H 1.08997 * 109.46968 * 305.41314 * 4 3 2 33 33 H 1.09002 * 109.47229 * 205.00039 * 6 5 4 34 34 H 1.09004 * 109.47067 * 325.00194 * 6 5 4 35 35 H 0.97006 * 119.99711 * 179.97438 * 10 9 7 36 36 H 1.08998 * 113.47281 * 267.69673 * 19 18 15 37 37 H 1.09007 * 113.46419 * 38.13594 * 19 18 15 38 38 H 1.09000 * 114.39826 * 272.67847 * 20 19 18 39 39 H 1.08997 * 114.26705 * 139.78860 * 20 19 18 40 40 H 1.08995 * 109.47208 * 57.72170 * 23 21 18 41 41 H 1.08992 * 109.47026 * 180.02562 * 24 23 21 42 42 H 1.09006 * 109.46988 * 299.99894 * 24 23 21 43 43 H 1.08995 * 109.47217 * 60.00014 * 24 23 21 44 44 H 1.08992 * 109.47529 * 51.95252 * 25 23 21 45 45 H 1.09003 * 109.46804 * 171.95165 * 25 23 21 46 46 H 1.08996 * 109.47162 * 291.94788 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9765 0.5735 -1.2569 6 6 4.1166 1.3952 -2.4616 7 6 5.4753 2.0471 -2.4698 8 1 6.1651 1.8677 -1.6584 9 6 5.8372 2.8735 -3.5125 10 7 7.0227 3.4428 -3.5192 11 14 4.6436 3.1844 -4.9154 12 1 3.8032 4.3667 -4.5974 13 1 5.4042 3.4394 -6.1650 14 1 3.7746 1.9943 -5.0989 15 16 4.3164 -1.0461 -1.3151 16 8 3.7392 -1.6194 -0.1501 17 8 3.9988 -1.4757 -2.6318 18 7 5.9565 -1.2089 -1.1530 19 6 7.1184 -1.1716 -2.0537 20 6 7.9629 -0.7145 -0.8528 21 6 6.8913 -1.4608 -0.0460 22 1 7.1158 -2.5173 0.1007 23 6 6.5019 -0.7529 1.2533 24 6 7.4993 -1.1214 2.3535 25 6 6.5204 0.7612 1.0344 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.9784 2.1759 0.0964 32 1 3.8509 0.5623 0.8366 33 1 4.0104 0.7657 -3.3451 34 1 3.3444 2.1645 -2.4686 35 1 7.2774 4.0239 -4.2530 36 1 7.4028 -2.1519 -2.4362 37 1 7.0351 -0.4201 -2.8388 38 1 7.9723 0.3637 -0.6934 39 1 8.9538 -1.1659 -0.8043 40 1 5.5009 -1.0647 1.5511 41 1 7.2217 -0.6174 3.2792 42 1 7.4861 -2.2001 2.5094 43 1 8.5004 -0.8095 2.0557 44 1 5.9204 1.0092 0.1590 45 1 6.1074 1.2601 1.9112 46 1 7.5467 1.0931 0.8773 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451939511.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:38 Heat of formation + Delta-G solvation = -82.855205 kcal Electronic energy + Delta-G solvation = -28417.890847 eV Core-core repulsion = 24664.251723 eV Total energy + Delta-G solvation = -3753.639124 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.48038 -37.83418 -36.47353 -35.57255 -35.05499 -33.95714 -32.53169 -29.74527 -27.99918 -27.18673 -26.94266 -25.86611 -25.32247 -22.76615 -21.60547 -21.19491 -19.68466 -17.84923 -17.26653 -17.07066 -16.38608 -16.29459 -15.66755 -15.54234 -15.21139 -14.73195 -14.52958 -14.11868 -13.76566 -13.39225 -13.19509 -12.79349 -12.67312 -12.49513 -12.25826 -12.15168 -12.10330 -11.94651 -11.66796 -11.53214 -11.33614 -11.27832 -11.18369 -11.08624 -11.01341 -10.70740 -10.61657 -10.52080 -10.39086 -10.26079 -10.11659 -9.77431 -9.52437 -9.38460 -8.66609 -8.52867 -8.06479 -6.17265 -4.16850 1.31711 3.22658 3.31780 3.38383 3.56093 4.11333 4.19055 4.34240 4.78475 4.89587 5.08521 5.15334 5.25016 5.27997 5.34075 5.41266 5.46732 5.50958 5.55318 5.61420 5.64589 5.75327 5.79654 5.84173 5.90427 5.95298 6.08787 6.15688 6.18010 6.23269 6.26669 6.38330 6.41247 6.54120 6.64127 6.72385 6.81949 6.85464 7.05299 7.20817 7.38605 7.49335 7.57549 8.40969 8.88857 9.44441 10.94341 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009839 B = 0.008095 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.008401 B = 3458.269974 C = 5011.350516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.377 6.377 3 C 0.039 3.961 4 C 0.133 3.867 5 N -0.980 5.980 6 C 0.214 3.786 7 C -0.539 4.539 8 H 0.088 0.912 9 C 0.078 3.922 10 N -0.892 5.892 11 Si 0.862 3.138 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.262 1.262 15 S 2.811 3.189 16 O -0.976 6.976 17 O -0.988 6.988 18 N -1.041 6.041 19 C 0.128 3.872 20 C -0.150 4.150 21 C 0.162 3.838 22 H 0.082 0.918 23 C -0.117 4.117 24 C -0.137 4.137 25 C -0.162 4.162 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.028 0.972 35 H 0.264 0.736 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.048 0.952 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.079 -5.676 9.370 11.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C -0.040 4.040 4 C 0.006 3.994 5 N -0.819 5.819 6 C 0.090 3.910 7 C -0.578 4.578 8 H 0.106 0.894 9 C -0.125 4.125 10 N -0.529 5.529 11 Si 0.689 3.311 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.186 1.186 15 S 2.822 3.178 16 O -0.961 6.961 17 O -0.972 6.972 18 N -0.880 5.880 19 C 0.002 3.998 20 C -0.189 4.189 21 C 0.056 3.944 22 H 0.100 0.900 23 C -0.137 4.137 24 C -0.195 4.195 25 C -0.219 4.219 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.126 0.874 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.067 0.933 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.749 -6.405 9.089 11.454 hybrid contribution -0.640 0.937 -0.875 1.433 sum -3.389 -5.468 8.214 10.434 Atomic orbital electron populations 1.22700 0.82136 1.02337 0.99414 1.88063 1.18724 1.27530 1.95254 1.23146 0.95586 0.85070 1.00193 1.21223 0.91077 1.00739 0.86321 1.57512 1.80111 1.27851 1.16438 1.19567 0.97926 0.91357 0.82151 1.21524 0.99259 1.28230 1.08757 0.89369 1.24816 0.94922 0.95173 0.97595 1.69879 1.19506 1.31129 1.32432 0.87050 0.81938 0.79417 0.82684 1.20157 1.20997 1.18601 1.00954 0.71098 0.73007 0.72764 1.93548 1.75350 1.76536 1.50617 1.93531 1.82538 1.80810 1.40330 1.60547 1.21942 1.87108 1.18368 1.22345 0.82261 1.00644 0.94559 1.23748 0.96408 1.02702 0.96012 1.22117 0.87175 0.98260 0.86884 0.89988 1.21467 1.00636 0.96876 0.94673 1.21698 0.99076 1.00888 0.97862 1.22208 1.03151 0.93897 1.02650 0.94484 0.94468 0.90035 0.92885 0.92784 0.88532 0.89900 0.93914 0.95358 0.92581 0.91292 0.88922 0.87355 0.91010 0.90037 0.92668 0.92964 0.92443 0.89892 0.93308 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.67 9.64 -44.80 -0.43 -7.10 16 3 C 0.04 0.61 6.26 37.16 0.23 0.84 16 4 C 0.13 2.29 4.05 -4.04 -0.02 2.28 16 5 N -0.98 -20.00 2.06 -115.66 -0.24 -20.24 16 6 C 0.21 4.90 4.50 -5.19 -0.02 4.88 16 7 C -0.54 -13.47 9.94 -34.44 -0.34 -13.82 16 8 H 0.09 2.28 6.64 -52.49 -0.35 1.93 16 9 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.89 -24.84 13.96 55.43 0.77 -24.07 16 11 Si 0.86 20.36 27.47 -169.99 -4.67 15.69 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 15 S 2.81 59.57 6.52 -107.50 -0.70 58.87 16 16 O -0.98 -21.06 14.91 -62.45 -0.93 -21.99 16 17 O -0.99 -24.24 16.87 -57.18 -0.96 -25.20 16 18 N -1.04 -18.93 3.57 -117.76 -0.42 -19.35 16 19 C 0.13 2.14 8.74 -8.38 -0.07 2.06 16 20 C -0.15 -2.15 7.67 -26.08 -0.20 -2.35 16 21 C 0.16 2.39 3.86 -72.40 -0.28 2.11 16 22 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 23 C -0.12 -1.64 3.05 -90.62 -0.28 -1.92 16 24 C -0.14 -1.52 9.19 37.16 0.34 -1.18 16 25 C -0.16 -2.41 7.16 37.16 0.27 -2.14 16 26 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.86 7.80 -51.93 -0.41 0.45 16 31 H 0.10 1.57 8.07 -51.93 -0.42 1.15 16 32 H 0.08 1.38 6.55 -51.93 -0.34 1.04 16 33 H 0.04 1.07 6.09 -51.93 -0.32 0.75 16 34 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 38 H 0.11 1.75 5.71 -51.93 -0.30 1.46 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.08 1.27 7.25 -51.93 -0.38 0.90 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 1.44 3.46 -51.93 -0.18 1.26 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.89 6.67 -51.93 -0.35 0.54 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -31.72 368.09 -9.03 -40.75 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.64 Total: 2.82 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 0.64 Total: -5.73 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: 0.12 Total: -63.65 kcal Atomic # 8 Polarization: -51.97 SS G_CDS: -2.33 Total: -54.29 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Atomic # 16 Polarization: 59.57 SS G_CDS: -0.70 Total: 58.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.72 -9.03 -40.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451939511.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.106 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds